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Welcome to the LIS BeanMine!

This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR as a demo built solely from the LIS tripal.chado database. Contact Sam Hokin shokin at ncgr dot org.

Latest updates (v0.6, 24 October 2016)

  • Flanking regions 5kb upstream and downstream of genes have been added.
  • Introns have been added.
  • Linkage group and genetic map report pages now show a graphical map with the locations of markers and QTLs on the linkage group(s).
  • A new Shared Motif Search is now conducted in list analysis of gene flanking regions.
  • Genomic region search has a new checkbox to enforce strand-specific searches. Minus strand regions are indicated by start>end a la BLAST.
  • Gene.note (from chado.featureprop) has been deprecated in favor of Gene.description (from chado.gene).
  • The expression heat map now shows for Gene list analysis in addition to mRNA/transcripts.