BeanMine: Home

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Welcome to the LIS BeanMine!

This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR as a demo built solely from the LIS tripal.chado database. Contact Sam Hokin shokin at ncgr dot org.

Check out the new Shared Motif Search analysis of this specially selected list of upstream gene flanking regions!

Latest updates (v0.6, 24 October 2016)

Flanking regions 5kb upstream and downstream of genes have been added.
Introns have been added.
Linkage group and genetic map report pages now show a graphical map with the locations of markers and QTLs on the linkage group(s).
A new Shared Motif Search is now conducted in list analysis of gene flanking regions.
Genomic region search has a new checkbox to enforce strand-specific searches. Minus strand regions are indicated by start>end a la BLAST.
Gene.note (from chado.featureprop) has been deprecated in favor of Gene.description (from chado.gene).
The expression heat map now shows for Gene list analysis in addition to mRNA/transcripts.