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Welcome to the LIS BeanMine!

This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR, built from the LIS chado database plus expression data from PvGEA and Phytozome. Contact Sam Hokin shokin at ncgr dot org.

Latest updates (v0.8b, April, 2018)

  • Ontology annotations have been expanded to include parents of imported annotations. So, for example, a search on the trait ontology term TO:0000181 "seed weight" will reveal QTLs that were directly associated with the child term TO:0000269 "100-seed weight" in the data source.
  • Some bug fixes, and some missing data have been restored.
  • We've added a search against the JASPAR2018 motif database on the Gene Flanking Regions list analysis, for motifs that contribute to the SeqLogo (if any).