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Welcome to BeanMine!

This mine integrates genomic and genetic data for common bean and lima bean. It is being developed by the Legume Information System, and is built from the LIS datastore. Contact Sam Hokin shokin at ncgr dot org.

v2.1 (January, 2021)

BeanMine is sourced from files found on the LIS datastore (https://legumeinfo.org/data/public/).
This 2.1 update adds phylogenetic trees to the gene families.

Genomic queries, leading to genes and other chromosome features. Read more


Query for genomics:

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Queries on homology, synteny, etc. Read more


Query for comparison:

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Queries on GO terms, etc. Read more


Query for function:

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Queries on gene expression, resulting in gene lists. Read more


Query for expression:

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Queries on genetic data: QTLs, genetic maps, markers, etc. Read more


Query for genetics:

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Queries resulting in publication lists. Read more


Query for publications:

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Perl, Python, Ruby and Java API

perl java python ruby

Access our BeanMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages:

USDA
Legume Federation
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The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
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