BeanMine: Home

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Search this mine. Enter names, identifiers or keywords. Examples: Phvul.002G040500, Phvul.002G040500.1, Seed weight 3-2.

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Welcome to BeanMine!

This mine integrates genomic and genetic data for common bean. It is being developed by the Legume Information System, and is built from the LIS chado database plus expression data from PvGEA and Phytozome. Contact Sam Hokin shokin at ncgr dot org.

v0.10 (April, 2019)

Organisms are now a genus+species (or NCBI taxon ID); a new entity Strains distinguishes specific lines/genomes/etc. Every SequenceFeature is associated with a Strain.
We've switched to Apache Solr search, which is significantly faster.

Genomic queries, leading to genes and other chromosome features. Read more

Query for genomics:

Queries on homology, synteny, etc. Read more

Query for comparison:

Gene Homologues

Queries on GO terms, etc. Read more

Query for function:

Queries on gene expression, resulting in gene lists. Read more

Query for expression:

Queries on genetic data: QTLs, genetic maps, markers, etc. Read more

Query for genetics:

Queries resulting in publication lists. Read more

Query for publications:

Title Publications

Perl, Python, Ruby and Java API

perl java python ruby

Access our BeanMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages:

InterMine is funded by the

and interoperation is funded by

The Legume Information System (LIS) is a research project of the
USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.

Mine development is also supported by the Legume Federation,
an NSF project to federate legume resources around the world.

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