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Welcome to the LIS BeanMine!

This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR, built from the LIS chado database plus expression data from PvGEA and Phytozome. Contact Sam Hokin shokin at ncgr dot org.

Latest updates (v0.10, January, 2019)

  • "Organisms" are now a genus+species (or NCBI taxon ID); a new entity "Strains" distinguishes specific lines/genomes/etc. Every SequenceFeature is associated with a Strain.
  • We've switched to Apache Solr search, which should be faster.

Genomic queries, leading to genes and other chromosome features. Read more


Query for genomics:

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Queries on homology, synteny, etc. Read more


Query for comparison:

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Queries on GO terms, etc. Read more


Query for function:

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Queries on gene expression, resulting in gene lists. Read more


Query for expression:

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Queries on genetic data: QTLs, genetic maps, markers, etc. Read more


Query for genetics:

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Queries resulting in publication lists. Read more


Query for publications:

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Perl, Python, Ruby and Java API

perl java python ruby

Access our BeanMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages: