Search

 

Search this mine. Enter names, identifiers or keywords. Examples: Phvul.002G040500, Phvul.002G040500.1, Seed weight 3-2.

Analyze

Enter a list of identifiers.

advanced

Welcome to the LIS BeanMine!

This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR, built from the LIS chado database plus expression data from PvGEA and Phytozome. Contact Sam Hokin shokin at ncgr dot org.

Check out the templates we've built to help you find stuff! Let us know if there's a template query you'd like to add!

Latest updates (v0.8b, April, 2018)

  • Ontology annotations have been expanded to include parents of imported annotations. So, for example, a search on the trait ontology term TO:0000181 "seed weight" will reveal QTLs that were directly associated with the child term TO:0000269 "100-seed weight" in the data source.
  • Some bug fixes, and some missing data have been restored.
  • We've added a search against the JASPAR2018 motif database on the Gene Flanking Regions list analysis, for motifs that contribute to the SeqLogo (if any).

InterMine © 2002 - 2018 Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, United Kingdom