BeanMine: Home

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Search this mine. Enter names, identifiers or keywords. Examples: Phvul.002G040500, Phvul.002G040500.1, Seed weight 3-2.

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Welcome to the LIS BeanMine!

This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR, built from the LIS chado database plus expression data from PvGEA and Phytozome. Contact Sam Hokin shokin at ncgr dot org.

Latest updates (v0.10, January, 2019)

"Organisms" are now a genus+species (or NCBI taxon ID); a new entity "Strains" distinguishes specific lines/genomes/etc. Every SequenceFeature is associated with a Strain.
We've switched to Apache Solr search, which should be faster.

Genomic queries, leading to genes and other chromosome features. Read more

Query for genomics:

Queries on homology, synteny, etc. Read more

Query for comparison:

Queries on GO terms, etc. Read more

Query for function:

Queries on gene expression, resulting in gene lists. Read more

Query for expression:

Queries on genetic data: QTLs, genetic maps, markers, etc. Read more

Query for genetics:

Queries resulting in publication lists. Read more

Query for publications:

Perl, Python, Ruby and Java API

perl java python ruby

Access our BeanMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages:

InterMine is funded by the

and interoperation is funded by

The Legume Information System (LIS) is a research project of the
USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.

Mine development is also supported by the Legume Federation,
an NSF project to federate legume resources around the world.

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