Find genes that have high expression in a given tissue in at least one of the expression experiments. (Default: expression>100 in Nodules.)

Search for QTLs associated with the given Trait Ontology term. (Default: seed weight.)

Find the genes that are annotated by the given GO term. (Default: photosynthesis.)

Display the transcripts and their (truncated) sequences for a given gene. Default: Phvul.002G040500.

Given a gene, show its homologues (based in this mine on common gene family membership). Default: Phavu.002G040500.

Find genes that express above a given value in the given sample. Default: above 1000 TPM in RT (root tip). Note: if you'd like to study differential expression, make one list of genes with expression above a certain amount in a sample and another with expression below a certain amount in a different sample. Intersect the two lists and you have genes that satisfy both criteria.

Find the proteins which have protein HMM matches that belong to the requested protein domain, e.g. PF01582.

Display the expression in various tissues from various studies for the given gene. Default: Phvul.002G040500.

Given a gene, provide its GO ontology annotations. Default: Phavu.002G040500.

List genes whose description contains the given string. Default: HD-ZIP.

Show the transcripts for genes whose description contains the given string. Default: HD-Zip.

Find genes within a given region. Default: Pv01:1000000-2000000.

Find genetic markers that are located within the given genomic region. Default: Pv01:1000000-2000000.

Find publications containing the given string in the title. Default: climbing.