Find genes that have high expression in a given tissue in at least one of the expression experiments. (Default: expression>100 in Nodules.)

Search for QTLs associated with the given Trait Ontology term. (Default: seed weight.)

Find the genes that are annotated by the given GO term. (Default: photosynthesis.)

Display the transcripts and their (truncated) sequences for a given gene. Default: Phvul.002G040500.

Find the proteins which have protein HMM matches that belong to the requested protein domain, e.g. PF01582.

Find genes that express above a given value in the given sample. Default: above 1000 TPM in RT (root tip). Note: if you'd like to study differential expression, make one list of genes with expression above a certain amount in a sample and another with expression below a certain amount in a different sample. Intersect the two lists and you have genes that satisfy both criteria.

Display the expression in various tissues from various studies for the given gene. Default: Phvul.002G040500.

Given a gene, provide its GO ontology annotations. Default: Phavu.002G040500.

Given a gene, show its homologues (based in this mine on common gene family membership). Default: Phavu.002G040500.

List genes whose description contains the given string. Default: HD-ZIP.

Show the transcripts for genes whose description contains the given string. Default: HD-Zip.

Find genes within a given region. Default: Pv01:1000000-2000000.

Find genetic markers that are located within the given genomic region. Default: Pv01:1000000-2000000.

Find publications containing the given string in the title. Default: climbing.