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Welcome to the LIS ChickpeaMine!

This mine integrates many types of data for chickpea. It is currently under development by LIS/NCGR as a demo built solely from the LIS tripal.chado database. Contact Sam Hokin shokin at ncgr dot org.

ChickpeaMine is here!

ChickpeaMine contains two genomes from LIS: chickpea desi, version ICC 4958 v2.0; and chickpea kabuli, version CDC Frontier v1.0. They are treated as separate InterMine organisms, with NCBI Taxon ID 3827 but differentiated by the Organism.variety field. Desi gene names start with ICC4958, for example ICC4958.Ca_00001. Kabuli gene names end with _gene, for example Ca_00001_gene. This mine contains desi ICC4958 RNA expression from the Chickpea Transcriptome Atlas - I. Those mRNA reads were mapped to the ICC4958 genome and quantified by LIS staff.