Display the proteins and their (truncated) sequences associated with a given gene. Default: CDCFrontier.Ca_00007.

Given a gene, provide its GO ontology annotations. Default: CDCFrontier.Ca_00007.

Display the expression in various tissues for the given gene. Default: ICC4958.Ca_00001.

Find genes which are annotated by the given GO term. Default: photosynthesis.

Display the transcripts and their (truncated) sequences for a given gene. Default: CDCFrontier.Ca_00007.

Find genes that express above a given value in the given sample. Default: above 1000 TPM in YL (young leaf). Note: if you'd like to study differential expression, make one list of genes with expression above a certain amount in a sample and another with expression below a certain amount in a different sample. Intersect the two lists and you have genes that satisfy both criteria.

Given a gene, show its homologues (based in this mine on common gene family membership). Default: CDCFrontier.Ca_00007.

Show proteins for genes whose description contains the given string. Default: HD-Zip.

List genes whose description contains the given string. Default: HD-ZIP.

Show the transcripts for genes whose description contains the given string. Default: HD-Zip.

Find genes within a given region. Default: CDCFrontier.Ca1:1000000-2000000.