CowpeaMine: Home

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Search CowpeaMine. Enter names, identifiers or keywords for genes, proteins, GO terms, QTLs, linkage groups, etc. Example: Flower color.

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First Time Here?

CowpeaMine integrates genomic and genetic data for cowpea, Vigna unguiculata, mostly from the UC-Riverside group.
It is being developed by LIS/NCGR as a demo built from the LIS tripal.chado database as well as data from publications. Contact Sam Hokin shokin at ncgr dot org.

Here's a query that finds genes that are spanned by a given trait's markers and also have a given GO term.

NEW: Trait Ontology terms have been added, which we've associated with QTLs where appropriate.

Note 1: We currently have very few QTLs in the mine, as we've restricted the set to those confirmed by the UC-Riverside group in light of recent research; we'll be adding more as they are approved!
Note 2: We are not currently storing cowpea chromosome sequences, as the genome has not yet been published; once that publication hits the stands, we'll load the chromosome sequences! (This prevents some features from being viewed on the JBrowse.)