Data Sources and their Data Sets

LIS Datastore: species descriptions
Arachis/duranensis/about_this_collection
Glycine max organism and strain information.
Arachis/ipaensis/about_this_collection
Glycine max organism and strain information.
Cajanus/cajan/about_this_collection
Glycine cyrtoloba organism and strain information.
Glycine/max/about_this_collection
Glycine cyrtoloba organism and strain information.
Lotus/japonicus/about_this_collection
Glycine max organism and strain information.
Lupinus/angustifolius/about_this_collection
Glycine max organism and strain information.
Medicago/truncatula/about_this_collection
Glycine max organism and strain information.
Phaseolus/vulgaris/about_this_collection
Glycine max organism and strain information.
Vigna/angularis/about_this_collection
Vigna angularis organism and strain information.
Vigna/radiata/about_this_collection
Vigna radiata organism and strain information.
Vigna/unguiculata/about_this_collection
Vigna unguiculata organism and strain information.
LIS Datastore: genome assemblies
CB5-2.gnm1.WDTB
Vigna unguiculata genome assembly for CB5-2
Gyeongwon.gnm3.JyYC
genome assembly
IT97K-499-35.gnm1.QnBW
Vigna unguiculata accession IT97K-499-35 genome assembly 1.0
Sanzi.gnm1.YNCM
Vigna unguiculata genome assembly for Sanzi
Shumari.gnm1.V0CS
Vigna angularis accession Shumari genome
Suvita2.gnm1.5QLL
Vigna unguiculata genome assembly for Suvita2
TZ30.gnm1.TX9W
Vigna unguiculata genome assembly for TZ30
UCR779.gnm1.M7KZ
Vigna unguiculata genome assembly for UCR779
VC1973A.gnm6.3nL8
Directory of scaffold assemblies and pseudomolecule assemblies.
Xiabao_II.gnm1.WDBP
Vigna unguiculata genome assembly for Xiabao_II
ZN016.gnm1.997F
Vigna unguiculata genome assembly for ZN016
LIS Datastore: genome annotation
CB5-2.gnm1.ann1.0GKC
Genome annotation for Vigna unguiculata CB5-2
Gyeongwon.gnm3.ann1.3Nz5
Directory of gene annotations, called on an assembly of pseudomolecules and remaining scaffold sequences
IT97K-499-35.gnm1.ann1.zb5D
Vigna unguiculata accession IT97K-499-35; JGI annotation version 1 on assembly 1
IT97K-499-35.gnm1.ann2.FD7K
Genome annotation version 2 for Vigna unguiculata IT97K-499-35
Sanzi.gnm1.ann1.HFH8
Genome annotation for Vigna unguiculata Sanzi
Shumari.gnm1.ann1.8BRS
Vigna angularis accession Shumari genome annotation files
Suvita2.gnm1.ann1.1PF6
Genome annotation for Vigna unguiculata Suvita2
TZ30.gnm1.ann2.59NL
Genome annotation for Vigna unguiculata TZ30
UCR779.gnm1.ann1.VF6G
Genome annotation for Vigna unguiculata UCR779
VC1973A.gnm6.ann1.M1Qs
Gene annotations
Xiabao_II.gnm1.ann1.4JFL
Genome annotation for Vigna unguiculata Xiabao_II
ZN016.gnm1.ann2.C7YV
Genome annotation for Vigna unguiculata ZN016
LIS Datastore: gene expression
IT97K-499-35.gnm1.ann1.expr.BWH5
Black-eyed pea gene expression atlas (IT97K-499-35)
LIS Datastore: genetic studies
CB27_x_IT82E-18.mst.Pottorff_Li_2014
null
CB27_x_IT97K-556-6.gen.Huynh_Ehlers_2015
Field-based assays for genetic mapping involved 92 F8 RILs derived from a cross of cowpea aphid-susceptible CB27 and aphid-resistant breeding line IT97K556-6.
CB46_x_IT93K-503-1.mst.Pottorff_Li_2014
null
IA_panel.gwas.Sandhu_Singh_2020
Strategies for the utilization of the USDA mung bean germplasm collection for breeding outcomes
IT84S-2246-4_x_TVu-14676.mst.Pottorff_Roberts_2014
null
IT99K-573-1-1_x_TVNu-1158.gen.Lo_Muñoz-Amatriaín_2018
215 F8 RILs developed from the cultivated (IT99K-573-1-1) and wild-type (TVNu-1158) accessions were used in mapping to study domestication-related traits.
MAGIC-2017.gen.Huynh_Ehlers_2018
A MAGIC population for cowpea developed from eight founder parents.
Sanzi_x_Vita7.gen.Pottorff_Ehlers_2012
A segregating population of 122 RILs, advanced from Sanzi x Vita 7, reveals a QTL, a candidate gene, and a SNP marker for hastate leaf shape.
ZN016_x_Zhijiang282.gen.Xu_Wu_2017
A novel genotyping assay for over 50,000 SNPs was employed to delineate genomic regions governing cowpea pod length.
iSelect-consensus-2016.gen.Muñoz-Amatriaín_Mirebrahim_2017
Illumina Cowpea iSelect Consortium Array, built from 37 cowpea accessions
mixed.gen.Burridge_Schneider_2017
A 189-entry diversity panel was used to study root architecture phenes.
mixed.gen.Herniter_Muñoz-Amatriaín_2018
Four populations were used to study black seed coat and pod tip color: two biparental RIL populations, the UC-Riverside eight-parent MAGIC population, and a diversity minicore population.
mixed.gen.Huynh_Matthews_2016
87 RILs from CB27×24-125-B-1; 170 F2:3 families from IT84S-2049×UCR779; 132 F2:3 families from IT93K-503-1×UCR779 are used to study root-knot nematode (RKN) resistance.
mixed.gwas.Lo_Muñoz-Amatriaín_2019
GWAS of seed size in cowpea, conducted on 368 diverse accessions from 51 countries, genotyped using the Cowpea iSelect array.
LIS Datastore: genetic maps
MAGIC-2017.map.Huynh_Ehlers_2018
A MAGIC population for cowpea developed from eight founder parents.
iSelect-consensus-2016.map.Muñoz-Amatriaín_Mirebrahim_2017
Illumina Cowpea iSelect Consortium Array, built from 37 cowpea accessions
LIS Datastore: genetic markers
IT97K-499-35.gnm1.mrk.Cowpea1MSelectedSNPs
SNP mining from 183,118 ESTs sequenced from 17 cDNA libraries yielded ≈10,000 high-confidence SNPs from which an Illumina 1,536-SNP GoldenGate genotyping array was developed.
VC1973A.gnm6.mrk.Sandhu_Singh_2020
Genotyping with the 51,128 single nucleotide polymorphism (SNP) Illumina iSelect BeadArray resulted in 36,346 SNPs that were polymorphic between the eight parents (68.26%).
VC1973A.gnm6.mrk.microsatellites
SSR markers and genomic locations on the genome sequence of Vigna radiata, accession VC1973A
LIS Datastore: synteny
Gyeongwon.gnm3.syn.wCFF
Synteny between Vigna angularis Gyeongwon and other species accessions calculated by LIS.
IT97K-499-35.gnm1.syn.W3NY
Synteny between Vigna unguiculata IT97K-499-35 and other species accessions calculated by LIS.
VC1973A.gnm6.syn.mcwy
Synteny between Vigna radiata VC1973A and other species accessions calculated by LIS.
LIS Datastore: other
legume.genefam.fam1.M65K
null
legume.genefam.fam1.M65K.trees_ML_rooted
null
Cowpea Crop Ontology
Cowpea Crop Ontology
null
Gene Ontology
Gene Ontology
null
InterMine post-processor
InterMine gene-flanking regions
null
InterMine intergenic regions
null
InterPro
InterPro data set
null
InterPro domain GO annotations
null
Plant Ontology
Plant Ontology
null
Plant Trait Ontology
Plant Trait Ontology
null
Sequence Ontology
Sequence Ontology
null
USDA
InterMine logo
The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
BeanMine | ChickpeaMine | CowpeaMine | LupinMine | PeanutMine | SoyMine | MedicMine | LegumeMine
InterMine © 2002 - 2020 Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, United Kingdom