Data Sources and their Data Sets
CATHGENE3D
CDD
GO
GO
The Gene Ontology (GO) knowledgebase is the world's largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research.
HAMAP
InterMine post-processor
InterMine gene-flanking regions
Gene-flanking regions created by the core InterMine post-processor
InterMine intergenic regions
Intergenic regions created by the InterMine core post-processor
InterPro
InterPro data set
InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.
InterPro domain GO annotations
Mapping of GO terms to InterPro entries.
LIS Datastore
A17_HM341.gnm4.2GZ9
Medicago truncatula A17_HM341 gnm4 genome assembly
A17_HM341.gnm4.ann2.G3ZY
Genome annotations (version Mt4.0v2)
A17_HM341.gnm4.ann2.expr.RLZY
Medicago truncatula A17_HM341 microarray gene expression profiles from the Noble Medicago truncatula Gene Expression Atlas. Affymetrix probesets were mapped to A17_HM341 genes by INRAE.
HM004.gnm1.L7PM
Medicago truncatula HM004 gnm1 genome assembly
HM004.gnm1.ann1.2XTB
Data in this directory derives from the NSF-funded Medicago HapMap project; project website: http://www.medicagohapmap.org
LIS gene family phylogenetic trees
LIS gene family phylogenetic tree files
R108_HM340.gnm1.XT6J
Medicago truncatula R108_HM340 gnm1 genome assembly
R108_HM340.gnm1.ann1.85YW
Genome annotation for R108_HM340.gnm1.ann1
XinJiangDaYe.gnm1.12MR
Medicago sativa XinJiangDaYe gnm1 genome assembly
XinJiangDaYe.gnm1.ann1.RKB9
medsa.XinJiangDaYe.gnm1.ann1 genome annotation
jemalong_A17.gnm5.MVZ2
Medicago truncatula jemalong_A17 gnm5 genome assembly
jemalong_A17.gnm5.ann1_6.L2RX
Genome annotations (version Mt5.0-1.6)
legume.genefam.fam1.M65K
LIS gene families
PANTHER
PFAM
PIRSF
PRINTS
PROFILE
PROSITE
Plant Ontology
Plant Ontology
The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies.
Plant Trait Ontology
Plant Trait Ontology
A controlled vocabulary of describe phenotypic traits in plants.
SFLD
SMART
SSF
Sequence Ontology
Sequence Ontology
The Sequence Ontology is a set of terms and relationships used to describe the features and attributes of biological sequence.
TIGRFAMs
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