Data Sources and their Data Sets

LIS Datastore: species descriptions
Arachis/duranensis/about_this_collection
Glycine max organism and strain information.
Arachis/ipaensis/about_this_collection
Glycine max organism and strain information.
Cajanus/cajan/about_this_collection
Glycine cyrtoloba organism and strain information.
Glycine/max/about_this_collection
Glycine max organism and strain information.
Lotus/japonicus/about_this_collection
Glycine max organism and strain information.
Lupinus/angustifolius/about_this_collection
Glycine max organism and strain information.
Medicago/sativa/about_this_collection
Medicago sativa organism and strain information.
Medicago/truncatula/about_this_collection
Medicago truncatula organism and strain information.
Phaseolus/vulgaris/about_this_collection
Glycine max organism and strain information.
Vigna/angularis/about_this_collection
Glycine max organism and strain information.
Vigna/radiata/about_this_collection
Glycine max organism and strain information.
LIS Datastore: genome assemblies
A17.gnm5.MVZ2
Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17
A17_HM341.gnm4.2GZ9
Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17 (HM341)
HM004.gnm1.L7PM
Genome assembly for Medicago truncatula (HM004)
HM010.gnm1.YDPY
Genome assembly for Medicago truncatula (HM010)
HM022.gnm1.B190
Genome assembly for Medicago truncatula (HM022)
HM023.gnm1.FFHH
Genome assembly for Medicago truncatula (HM023)
HM034.gnm1.6VW9
Genome assembly for Medicago truncatula (HM034)
HM050.gnm1.9JPP
Genome assembly for Medicago truncatula (HM050)
HM056.gnm1.JBKN
Genome assembly for Medicago truncatula (HM056)
HM058.gnm1.JVBP
Genome assembly for Medicago truncatula (HM058)
HM060.gnm1.V7B2
Genome assembly for Medicago truncatula (HM060)
HM095.gnm1.FBQK
Genome assembly for Medicago truncatula (HM095)
HM125.gnm1.GFN2
Genome assembly for Medicago truncatula (HM125)
HM129.gnm1.9HG9
Genome assembly for Medicago truncatula (HM129)
HM185.gnm1.1G05
Genome assembly for Medicago truncatula (HM185)
HM324.gnm1.SJSJ
Genome assembly for Medicago truncatula (HM324)
R108.gnmHiC_1.7RWS
An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.
XinJiangDaYe.gnm1.12MR
Pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe
LIS Datastore: genome annotation
A17.gnm5.ann1_6.L2RX
Genome annotation for Medicago truncatula (A17)
A17_HM341.gnm4.ann2.G3ZY
Genome annotation for Medicago truncatula (A17 HM341)
HM004.gnm1.ann1.2XTB
Genome annotation for Medicago truncatula (HM004)
HM010.gnm1.ann1.WV9J
Genome annotation for Medicago truncatula (HM010)
HM022.gnm1.ann1.6C8N
Genome annotation for Medicago truncatula (HM022)
HM023.gnm1.ann1.WZN8
Genome annotation for Medicago truncatula (HM023)
HM034.gnm1.ann1.YR6S
Genome annotation for Medicago truncatula (HM034)
HM050.gnm1.ann1.GWRX
Genome annotation for Medicago truncatula (HM050)
HM056.gnm1.ann1.CHP6
Genome annotation for Medicago truncatula (HM056)
HM058.gnm1.ann1.LXPZ
Genome annotation for Medicago truncatula (HM058).
HM060.gnm1.ann1.H41P
Genome annotation for Medicago truncatula (HM060)
HM095.gnm1.ann1.55W4
Genome annotation for Medicago truncatula (HM095)
HM125.gnm1.ann1.KY5W
Genome annotation for Medicago truncatula (HM125).
HM129.gnm1.ann1.7FTD
Genome annotation for Medicago truncatula (HM129)
HM185.gnm1.ann1.GB3D
Genome annotation for Medicago truncatula (HM185)
HM324.gnm1.ann1.SQH2
Genome annotation for Medicago truncatula (HM324)
R108.gnmHiC_1.ann1.Y8NH
An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.
XinJiangDaYe.gnm1.ann1.RKB9
Gene annotations for pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe
LIS Datastore: gene expression
A17_HM341.gnm4.ann2.expr.RLZY
Affymetrix GeneChip expression data from the Noble Medicago truncatula Gene Expression Atlas
LIS Datastore: genetic studies
LIS Datastore: genetic maps
LIS Datastore: genetic markers
LIS Datastore: synteny
LIS Datastore: other
legume.genefam.fam1.M65K
null
phytozome_10_2.genefam.descriptors
null
Gene Ontology
Gene Ontology
null
InterMine post-processor
InterMine gene-flanking regions
null
InterMine intergenic regions
null
InterPro
InterPro data set
null
InterPro domain GO annotations
null
Plant Ontology
Plant Ontology
null
Plant Trait Ontology
Plant Trait Ontology
null
Sequence Ontology
Sequence Ontology
null
USDA
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The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
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