Search

 

Search this mine. Enter names, identifiers or keywords. Examples: Glyma.01G086900, Glyma.01G086900.1, BARCSOYSSR_04_1400, Seed yield 15-5, R-GMA-8879007.1, David Grant.

Analyze

Enter a list of identifiers.

Welcome to the LIS Soymine!

This mine integrates many types of data for soybean. It is currently under development by LIS/LegFed/NCGR as a demo built from the LIS chado database (genomic data) and the SoyBase database (genetic data). Contact Sam Hokin shokin at ncgr dot org.

Latest updates (v0.9, July 2018)

  • Phyotome gene families have been replaced by the new LIS gene families.
  • We've added some GWAS-derived QTLs from SoyBase. More to come.
  • Genes (rather than proteins) are now associated with Gramene Plant Reactome species-specific pathways. Look for the external link to the Gramene page on the Pathway report page.
  • Some model cleanup to make all the LIS mines use a consistent model.
  • Soybean self-synteny added.

Queries on homology, synteny, etc. Read more


Query for comparison:

More queries

Queries on gene expression, resulting in gene lists. Read more


Query for expression:

More queries

Queries on genetic data: QTLs, genetic maps, markers, etc. Read more


Query for genetics:

More queries

Queries resulting in publication lists. Read more


Query for publications:

More queries

Perl, Python, Ruby and Java API

perl java python ruby

Access our SoyMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages: