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Search this mine. Enter names, identifiers or keywords. Examples: Glyma.01G086900, Glyma.01G086900.1, BARCSOYSSR_04_1400, Seed yield 15-5, R-GMA-8879007.1, David Grant.

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Welcome to the LIS Soymine!

This mine integrates many types of data for soybean. It is currently under development by LIS/LegFed/NCGR as a demo built from the LIS chado database (genomic data) and the SoyBase database (genetic data). Contact Sam Hokin shokin at ncgr dot org.

Latest updates (v0.9, July 2018)

  • Phyotome gene families have been replaced by the new LIS gene families.
  • We've added some GWAS-derived QTLs from SoyBase. More to come.
  • Genes (rather than proteins) are now associated with Gramene Plant Reactome species-specific pathways. Look for the external link to the Gramene page on the Pathway pages.
  • Genomic queries, leading to genes and other chromosome features. Read more


    Query for genomics:

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    Queries that lead to proteins, transcripts, etc. Read more


    Query for gene products:

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    Queries on homology, synteny, etc. Read more


    Query for comparison:

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    Queries on GO terms, etc. Read more


    Query for function:

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    Queries on gene expression, resulting in gene lists. Read more


    Query for expression:

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    Queries on genetic data: QTLs, genetic maps, markers, etc. Read more


    Query for genetics:

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    Queries resulting in publication lists. Read more


    Query for publications:

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    Perl, Python, Ruby and Java API

    perl java python ruby

    Access our SoyMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages: