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Welcome to the LIS Soymine!

This mine integrates many types of data for soybean. It is currently under development by LIS/LegFed/NCGR as a demo built from the LIS tripal.chado database (genomic data) and exports from Soybase (genetic data). Contact Sam Hokin shokin at ncgr dot org.

Latest updates (v0.6, 25 October 2016)

  • Flanking regions 5kb upstream and downstream of genes have been added.
  • Introns have been added.
  • Linkage group and genetic map report pages now show a graphical map with the locations of markers and QTLs on the linkage group(s).
  • A new Shared Motif Search is now conducted in list analysis of gene flanking regions.
  • Genomic region search has a new checkbox to enforce strand-specific searches. Minus strand regions are indicated by start>end a la BLAST.
  • Gene.note (from chado.featureprop) has been deprecated in favor of Gene.description (from chado.gene).
  • The expression heat map now shows on Gene list analysis in addition to mRNA/transcript lists.