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Search this mine. Enter names, identifiers or keywords. Examples: Glyma.01G086900, GlysoPI483463.06G132100, BARC-017645-02637, Allene oxide cyclase, Seed yield 4-g1, Sujan Mamidi.

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Welcome to the LIS SoyMine!

This mine integrates many types of data for soybean, both Glycine max and Glycine soja. It is built with data from the Legume Information System datastore (https://legumeinfo.org/data/public/). Contact Sam Hokin shokin at ncgr dot org.

v2.1 (November, 2021)

SoyMine is sourced from files found on the LIS datastore (https://legumeinfo.org/data/public/). This November, 2021 update adds more Glycine max and Glycine soja strains: a total of 15 genome assemblies for 11 strains.

Genomic queries, leading to genes and other chromosome features. Read more


Query for genomics:

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Queries on homology, synteny, etc. Read more


Query for comparison:

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Queries on GO terms, etc. Read more


Query for function:

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Queries on gene expression, resulting in gene lists. Read more


Query for expression:

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Queries on genetic data: QTLs, genetic maps, markers, etc. Read more


Query for genetics:

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Queries resulting in publication lists. Read more


Query for publications:

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Perl, Python, Ruby and Java API

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Access our SoyMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages:

USDA
Legume Federation
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The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
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