Search this mine. Enter names, identifiers or keywords. Examples: Glyma.01G086900, GlysoPI483463.06G132100, BARC-017645-02637, Allene oxide cyclase, Seed yield 4-g1, Sujan Mamidi.

Analyze a List

Enter a list of identifiers. Example (Gene):
glyma.Lee.gnm2.ann1.Gm_00467, glyma.Lee.gnm2.ann1.Gm_06449, glyma.Lee.gnm2.ann1.Gm_16589
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Welcome to the LIS SoyMine!

This mine integrates genetic and genomic data for soybean, and other Glycine species. It is built with data from the LIS Datastore and SoyBase. Contact Sam Hokin shokin at ncgr dot org. (April, 2022)

SoyMine is sourced from files found on the LIS datastore and SoyBase This update adds several Glycine perennial species for a total of 21 Glycine genome assemblies and annotations. It also adds 19 GWAS and 316 QTL studies from SoyBase. Take a look at the templates under GENETICS below to see how to find GWAS and QTLs for your traits of interest!

Queries on homology, synteny, etc. Read more

Query for comparison:

More queries

Queries on gene expression, resulting in gene lists. Read more

Query for expression:

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Queries on genetic data: QTLs, genetic maps, markers, etc. Read more

Query for genetics:

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Queries resulting in publication lists. Read more

Query for publications:

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Perl, Python, Ruby and Java API

perl java python ruby

Access our SoyMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages:

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The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
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