CDS models for the glyma.Lee.gnm1 genome
glyma.Lee.gnm1.ann1.6NZV.cds_primaryTranscript.fna
CDS models for the glyma.Wm82.gnm1 genome
glyma.Wm82.gnm1.ann1.DvBy.cds_primaryTranscript.fna
CDS models for the glyma.Wm82.gnm2 genome
glyma.Wm82.gnm2.ann1.RVB6.cds_primaryTranscript.fna
CDS models for the glyma.Wm82.gnm4 genome
glyma.Wm82.gnm4.ann1.T8TQ.cds_primaryTranscript.fna
CDS models for the glyma.Zh13.gnm1 genome
glyma.Zh13.gnm1.ann1.8VV3.cds_primaryTranscript.fna
CDS models for the glyso.PI483463.gnm1 genome
glyso.PI483463.gnm1.ann1.3Q3Q.cds_primaryTranscript.fna
CDS models for the glyso.W05.gnm1 genome
glyso.W05.gnm1.ann1.T47J.cds_primaryTranscript.fna
Gene family assignments for glyma.Lee.gnm1 genes and proteins.
glyma.Lee.gnm1.ann1.6NZV.legfed_v1_0.M65K.gfa.tsv
Gene family assignments for glyma.Wm82.gnm1 genes and proteins.
glyma.Wm82.gnm1.ann1.DvBy.legfed_v1_0.M65K.gfa.tsv
Gene family assignments for glyma.Wm82.gnm2 genes and proteins.
glyma.Wm82.gnm2.ann1.RVB6.legfed_v1_0.M65K.gfa.tsv
Gene family assignments for glyma.Wm82.gnm4 genes and proteins.
glyma.Wm82.gnm4.ann1.T8TQ.legfed_v1_0.M65K.gfa.tsv
Gene family assignments for glyma.Zh13.gnm1 genes and proteins.
glyma.Zh13.gnm1.ann1.8VV3.legfed_v1_0.M65K.gfa.tsv
Gene family assignments for glyso.PI483463.gnm1 genes and proteins.
glyso.PI483463.gnm1.ann1.3Q3Q.legfed_v1_0.M65K.gfa.tsv
Gene family assignments for glyso.W05.gnm1 genes and proteins.
glyso.W05.gnm1.ann1.T47J.legfed_v1_0.M65K.gfa.tsv
Gene model annotation for the glyma.Lee.gnm1 genome
glyma.Lee.gnm1.ann1.6NZV.gene_models_main.gff3
Gene model annotation for the glyma.Wm82.gnm1 genome
glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.gff3
Gene model annotation for the glyma.Wm82.gnm2 genome
glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3
Gene model annotation for the glyma.Wm82.gnm4 genome
glyma.Wm82.gnm4.ann1.T8TQ.gene_models_main.gff3
Gene model annotation for the glyma.Zh13.gnm1 genome
glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.gff3
Gene model annotation for the glyso.PI483463.gnm1 genome
glyso.PI483463.gnm1.ann1.3Q3Q.gene_models_main.gff3
Gene model annotation for the glyso.W05.gnm1 genome
glyso.W05.gnm1.ann1.T47J.gene_models_main.gff3
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.29325965.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.29325965.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.31968016.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.31968016.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170707-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170707-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170711-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170711-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170714-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170714-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170803-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170803-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170808-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170808-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170814-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170814-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170908-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170908-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170915-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20170915-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20171006-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20171006-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20171018-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20171018-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20171027-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.KGK20171027-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180516-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180516-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180516-2.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180516-2.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180516-3.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180516-3.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180521-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180521-1.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180521-5.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180521-5.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180601-3.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180601-3.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180625-2.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180625-2.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180625-3.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.LBC20180625-3.phen.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.SST20180209-1.gwas.tsv
Glycine max GWAS imported from SoyBase.
glyma.mixed.gwas.1W14.SST20180209-1.phen.tsv
Glycine max gene, protein and mRNA ontology annotations.
glyma.Lee.gnm1.ann1.6NZV.info_annot.txt
Glycine max gene, protein and mRNA ontology annotations.
glyma.Wm82.gnm1.ann1.DvBy.info_annot.txt
Glycine max gene, protein and mRNA ontology annotations.
glyma.Wm82.gnm2.ann1.RVB6.info_annot.txt
Glycine max gene, protein and mRNA ontology annotations.
glyma.Wm82.gnm4.ann1.T8TQ.info_annot.txt
Glycine max genetic map imported from SoyBase.
glyma.mixed.map.9M0V.GmComposite2003.expt.tsv
Glycine max genetic map imported from SoyBase.
glyma.mixed.map.9M0V.GmComposite2003.mrk.tsv
Glycine max genetic map imported from SoyBase.
glyma.mixed.map.9M0V.GmComposite2003.phen.tsv
Glycine max genetic map imported from SoyBase.
glyma.mixed.map.9M0V.GmComposite2003.qtl.tsv
Glycine max organism and strain information.
description_Glycine_max.yml
Glycine max organism and strain information.
strains_Glycine_max.yml
Glycine soja gene, protein and mRNA ontology annotations.
glyso.PI483463.gnm1.ann1.3Q3Q.info_annot.txt
Glycine soja organism and strain information.
description_Glycine_soja.yml
Glycine soja organism and strain information.
strains_Glycine_soja.yml
LIS datastore genomic FASTA file for Glycine max Lee
glyma.Lee.gnm1.BXNC.genome_main.fna
LIS datastore genomic FASTA file for Glycine max Wm82.gnm1
glyma.Wm82.gnm1.FCtY.genome_main.fna
LIS datastore genomic FASTA file for Glycine max Wm82.gnm2
glyma.Wm82.gnm2.DTC4.genome_main.fna
LIS datastore genomic FASTA file for Glycine max Wm82.gnm4
glyma.Wm82.gnm4.4PTR.genome_main.fna
LIS datastore genomic FASTA file for Glycine max Zh13
glyma.Zh13.gnm1.N6C8.genome_main.fna
LIS datastore genomic FASTA file for Glycine soja PI483463
glyso.PI483463.gnm1.YJWS.genome_main.fna
LIS datastore genomic FASTA file for Glycine soja W05
glyso.W05.gnm1.SVL1.genome_main.fna
LIS gene families
legume.genefam.fam1.M65K.info_annot_ahrd.tsv
LIS gene family phylogenetic tree files
/data/LIS/Gene_families/legume.genefam.fam1.M65K/legume.genefam.fam1.M65K.trees_ML_rooted
Pan-gene sets for various Glycine species and strains.
glysp.mixed.pan2.TV81.hsh.tsv
Plant Reactome pathway assignments for glyma.Lee.gnm1 genes.
glyma.Lee.gnm1.ann1.6NZV.legfed_v1_0.M65K.pathway.tsv
Plant Reactome pathway assignments for glyma.Wm82.gnm1 genes.
glyma.Wm82.gnm1.ann1.DvBy.legfed_v1_0.M65K.pathway.tsv
Plant Reactome pathway assignments for glyma.Wm82.gnm2 genes.
glyma.Wm82.gnm2.ann1.RVB6.pathway.tsv
Plant Reactome pathway assignments for glyma.Wm82.gnm4 genes.
glyma.Wm82.gnm4.ann1.T8TQ.legfed_v1_0.M65K.pathway.tsv
Plant Reactome pathway assignments for glyma.Zh13.gnm1 genes.
glyma.Zh13.gnm1.ann1.8VV3.legfed_v1_0.M65K.pathway.tsv
Plant Reactome pathway assignments for glyso.PI483463.gnm1 genes.
glyso.PI483463.gnm1.ann1.3Q3Q.legfed_v1_0.M65K.pathway.tsv
Plant Reactome pathway assignments for glyso.W05.gnm1 genes.
glyso.W05.gnm1.ann1.T47J.legfed_v1_0.M65K.pathway.tsv
Protein models for the glyma.Lee.gnm1 genome
glyma.Lee.gnm1.ann1.6NZV.protein_primaryTranscript.faa
Protein models for the glyma.Wm82.gnm1 genome
glyma.Wm82.gnm1.ann1.DvBy.protein_primaryTranscript.faa
Protein models for the glyma.Wm82.gnm2 genome
glyma.Wm82.gnm2.ann1.RVB6.protein_primaryTranscript.faa
Protein models for the glyma.Wm82.gnm4 genome
glyma.Wm82.gnm4.ann1.T8TQ.protein_primaryTranscript.faa
Protein models for the glyma.Zh13.gnm1 genome
glyma.Zh13.gnm1.ann1.8VV3.protein_primaryTranscript.faa
Protein models for the glyso.PI483463.gnm1 genome
glyso.PI483463.gnm1.ann1.3Q3Q.protein_primaryTranscript.faa
Protein models for the glyso.W05.gnm1 genome
glyso.W05.gnm1.ann1.T47J.protein_primaryTranscript.faa
Soybean gene expression atlas from the Libault Lab.
glyma.Wm82.gnm2.ann1.expr.G7ZY.samples.tsv
Soybean gene expression atlas from the Libault Lab.
glyma.Wm82.gnm2.ann1.expr.G7ZY.source.tsv
Soybean gene expression atlas from the Libault Lab.
glyma.Wm82.gnm2.ann1.expr.G7ZY.values.tsv
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.aradu.V14167.gnm1.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.araip.K30076.gnm1.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.cajca.ICPL87119.gnm1.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.lotja.MG20.gnm3.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.lupan.Tanjil.gnm1.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.medtr.A17_HM341.gnm4.ann2.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.phavu.G19833.gnm1.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.phavu.G19833.gnm2.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.vigan.Gyeongwon.gnm3.ann1.gff
Synteny between soybean Wm82.gnm2 and other species.
glyma.Wm82.gnm2.ann1.x.vigra.VC1973A.gnm6.ann1.gff
mRNA models for the glyma.Lee.gnm1 genome
glyma.Lee.gnm1.ann1.6NZV.transcript_primaryTranscript.fna
mRNA models for the glyma.Wm82.gnm1 genome
glyma.Wm82.gnm1.ann1.DvBy.transcript_primaryTranscript.fna
mRNA models for the glyma.Wm82.gnm2 genome
glyma.Wm82.gnm2.ann1.RVB6.transcript_primaryTranscript.fna
mRNA models for the glyma.Wm82.gnm4 genome
glyma.Wm82.gnm4.ann1.T8TQ.transcript_primaryTranscript.fna
mRNA models for the glyso.PI483463.gnm1 genome
glyso.PI483463.gnm1.ann1.3Q3Q.transcript_primaryTranscript.fna