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LIS Datastore: species descriptions
Arachis cardenasii organism and strain information.
Arachis duranensis organism and strain information.
Arachis hypogaea organism and strain information.
Arachis ipaensis organism and strain information.
Arachis stenosperma organism and strain information.
LIS Datastore: genome assemblies
Arachis hypogaea accession Bailey II, genome assembly 1
Genome assembly for tetraploid peanut cultivar Fuhuasheng, from Chen et al., 2019
Genome assembly 1 for Arachis cardenasii, accession K10017
Genome assembly 1 for Arachis ipaensis, accession K30076.
Genome assembly for peanut cultivar Shitouqui, from Zhuang et al., 2019.
Genome assembly 1 for Arachis hypogaea, cultivar Tifrunner
Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.
Genome assembly 1 for Arachis duranensis, accession V14167
Genome assembly 2 for Arachis duranensis, accession V14167
LIS Datastore: genome annotation
Annotation 1 for Arachis hypogaea accession Bailey II, genome assembly 1
genome annotations for Arachis ipaensis K30076.gnm1.ann1
Arachis hypogaea accession Tifrunner annotation files from genome assembly 1.0
Gene models for genome assembly 2 for Arachis hypogaea, cultivar Tifrunner.
Annotation 2, using the BIND pipeline, for Arachis hypogaea, cultivar Tifrunner
genome annotations
LIS Datastore: synteny
LIS Datastore: gene expression
LIS Datastore: genetic markers
Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Axiom_Arachis2 is a SNP marker set developed by Clevenger, et al. DOI:10.1016/j.molp.2016.11.015
Axiom_Arachis_58K is a high-density SNP array with 58,233 SNPs reduced from 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors.
LIS Datastore: GWAS
Gangurde, Wang, et al. (2020) GWAS study of pod and seed weight on the NAM Florida-7 mapping population
Gangurde, Wang, et al. (2020) NAM Tifrunner GWAS study of pod and seed weight
GWAS determining markers associated with fatty acid composition in the USDA peanut core collection.
LIS Datastore: genetic maps
A genetic map from a Huayu28 x P76 RIL population composed of 2,334 markers (2,266 SNPs and 68 microsatellites) for the study of seed oleic and linoleic acid content.
SSR genetic map generated from a RIL mapping population derived from the cross of ICGS 44 and ICGS 76
SSR genetic map generated from a RIL population derived from the cross of ICGS 76 with CSMG 84-1
AA_A.duranensis_x_A.duranensis_a, SNP and SSR-based genetic map of Arachis duranensis from a cross of 'PI 475887' and 'Grif 15036'.
SSR-based genetic map constructed using a F5:6 RIL population derived from the cross of SunOleic 97R with NC94022 along with a Tomato spotted wilt virus QTL
An F6 population of 266 RILs was advanced by single seed descent from a cross of TAG 24 and GPBD 4. QTLs were found for Late leaf spot and Puccinia rust.
SSR genetic map from a cross of 'TAG 24' and 'ICGV 86031'
TT_TG26_x_GPBD4_b, an SSR map created from a cross of the A. hypogaea cultivars 'TG 26' and 'GPBD 4'.
Genetic map derived from a cross of A. hypogaea cultivers 'TG 26' and 'GPBD 4'.
Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
SSR-based genetic map constructed using a F5:6 RIL population derived from Tifrunner x GT-C20
TT_Tifrunner_x_GT-C20_b, an SSR-based map derived from a cross of the A. hypogaea cultivars Tifrunner and GT-C20.
Genetic map derived from a cross of A. hypogaea cultivars VG 9514 and TAG 24.
Consensus genetic map for Arachis hypogaea from three RIL populations: ICGS76 x CSMG84-1, ICGS44 x ICGS76, and TAG24 x ICGV86031
A consensus genetic map for Arachis hypogaea built from TAG24 x GPBD4 and TG26 x GPBD4 RIL populations
LIS Datastore: QTL studies
A genetic map from a Huayu28 x P76 RIL population composed of 2,334 markers (2,266 SNPs and 68 microsatellites) for the study of seed oleic and linoleic acid content
SSR-based genetic map constructed using a F5:6 RIL population derived from the cross of SunOleic 97R with NC94022 along with a Tomato spotted wilt virus QTL
An F6 population of 266 RILs was advanced by single seed descent from a cross of TAG 24 and GPBD 4. QTLs were found for Late leaf spot and Puccinia rust.
TT_TG26_x_GPBD4_b, an SSR map created from a cross of the A. hypogaea cultivars 'TG 26' and 'GPBD 4'.
Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
SSR-based genetic map constructed using a F5:6 RIL population derived from Tifrunner x GT-C20
TT_Tifrunner_x_GT-C20_b, an SSR-based map derived from a cross of the A. hypogaea cultivars Tifrunner and GT-C20.
Genetic map derived from a cross of A. hypogaea cultivars VG 9514 and TAG 24.
LIS Datastore: other
Pangene set for Arachis species, based on A. hypogaea, A. duranensis, and A. ipaensis. This pangene set includes four annotation sets from A. hypogaea and one each from A. duranensis and A. ipaensis.
gene families and phylogenetic trees for the legume family
Chemical Entities of Biological Interest (ChEBI)
EMBL-EBI
Gene Ontology
Gramene
InterMine post-processor
InterPro
PANTHER
Plant Ontology
Plant Trait Ontology
Sequence Ontology
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