Search

Search this mine. Enter names, identifiers or keywords. Examples: Glyma.01G086900, GlysoPI483463.06G132100, BARC-017645-02637, Allene oxide cyclase, Seed yield 4-1, Sujan Mamidi.

Analyze a List

Enter a list of identifiers. Example (Gene):
glyma.Lee.gnm2.ann1.Gm_00467, glyma.Lee.gnm2.ann1.Gm_06449, glyma.Lee.gnm2.ann1.Gm_16589
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Welcome to the LIS GlycineMine!

This mine integrates genetic and genomic data for soybean, and other Glycine species. It is built with data from the LIS Datastore and SoyBase. Contact Sam Hokin shokin at ncgr dot org.

Visit SoyBase

5.1.0.2 (January, 2023)

GlycineMine is sourced from files found on the LIS datastore https://data.legumeinfo.org/ and SoyBase https://soybase.org/. This mine contains 26 Glycine genome assemblies and annotations, 26 GWAS, 313 QTL studies on 26 genetic maps, 22 genetic marker sets, and 1 expression atlas.

Genomic queries, leading to genes and other chromosome features. Read more


Query for genomics:

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Queries on homology, synteny, etc. Read more


Query for comparison:

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Queries on GO terms, etc. Read more


Query for function:

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Queries on gene expression, resulting in gene lists. Read more


Query for expression:

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Queries on genetic data: QTLs, genetic maps, markers, etc. Read more


Query for genetics:

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Queries resulting in publication lists. Read more


Query for publications:

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Perl, Python, Ruby and Java API

perl java python ruby

Access our GlycineMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages:

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