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Search results 1 to 100 out of 129 for seed protein

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
Type Details Score
SO Term
Description: A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues.
SO Term
Description: A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation.
SO Term
Description: A match against a protein sequence.
SO Term
Description: A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond.
SO Term
Description: A region of DNA that is predicted to be translated and transcribed into a protein by a protein detection algorithm that does not get transcribed in nature.
SO Term
Description: An attribute describing a sequence that is bound by a protein.
SO Term
Description: A gene that codes for an RNA that can be translated into a protein.
SO Term
Description: A match to a protein HMM such as pfam.
SO Term
Description: A polypeptide region that proves structure in a protein that affects the stability of the protein.
SO Term
Description: An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap.
SO Term
Description: A transcript variant of a protein coding gene.
SO Term
Description: A protein coding transcript containing a retained intron.
SO Term
Description: A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules.
SO Term
Description: A transcript that is bound by a protein.
SO Term
Description: A sequence_variant which is predicted to change the protein encoded in the coding sequence.
SO Term
Description: An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein.
SO Term
Description: An attribute describing a gene sequence where the resulting protein is modified to regulate it.
SO Term
Description: The region of an exon that encodes for protein sequence.
SO Term
Description: A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues.
SO Term
Description: A CDS region corresponding to a mature protein region of a polypeptide.
SO Term
Description: A primary transcript that, at least in part, encodes one or more proteins.
SO Term
Description: An attribute of protein-coding genes where the initial protein product contains an intein.
SO Term
Description: A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change.
SO Term
Description: A post-translationally modified region in which residues of the protein are modified by phosphorylation.
SO Term
Description: A region of sequence identified by CHiP seq technology to contain a protein binding site.
SO Term
Description: A histone modification, whereby the histone protein is acylated at multiple sites in a region.
SO Term
Description: A translated ORF encoded entirely within the antisense strand of a known protein coding gene.
SO Term
Description: In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis.
SO Term
Description: A DNA motif to which the S. pombe Zas1 protein binds. The consensus sequence is 5'-(Y)CCCCAY-3'.
SO Term
Description: The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide.
SO Term
Description: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.
SO Term
Description: A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane.
SO Term
Description: A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated.
SO Term
Description: A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated.
SO Term
Description: A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons).
SO Term
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated.
SO Term
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated.
SO Term
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated.
SO Term
Description: A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels.
SO Term
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated.
SO Term
Description: A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated.
SO Term
Description: A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated.
SO Term
Description: A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated.
SO Term
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated.
SO Term
Description: A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated.
SO Term
Description: A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs.
SO Term
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated.
SO Term
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
SO Term
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated.
SO Term
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
SO Term
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
SO Term
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated.
SO Term
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated.
SO Term
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
SO Term
Description: A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated.
SO Term
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
SO Term
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated.
SO Term
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
SO Term
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated.
SO Term
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated.
SO Term
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
SO Term
Description: A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated.
SO Term
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated.
SO Term
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated.
SO Term
Description: The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle).
SO Term
Description: A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence.
SO Term
Description: Terminal inverted repeat (TIR) transposons of the superfamily Transib contain the DDE motif, which is related to the RAG1 protein involved in V(D)J recombination.
SO Term
Description: The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components.
SO Term
Description: Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation.
SO Term
Description: Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them.
SO Term
Description: A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay.
SO Term
Description: A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein.
SO Term
Description: A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL.
SO Term
Description: A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN.
SO Term
Description: A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues.
SO Term
Description: A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution.
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