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Search results 1 to 100 out of 129 for seed protein

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0001093 | protein_protein_contact
Description: A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues.
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SO Term
SO:0000104 | polypeptide
Description: A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation.
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SO Term
SO:0000349 | protein_match
Description: A match against a protein sequence.
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SO Term
SO:0000728 | intein
Description: A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond.
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SO Term
SO:0002248 | spurious_protein
Description: A region of DNA that is predicted to be translated and transcribed into a protein by a protein detection algorithm that does not get transcribed in nature.
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SO Term
SO:0000875 | bound_by_protein
Description: An attribute describing a sequence that is bound by a protein.
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SO Term
SO:0001217 | protein_coding_gene
Description: A gene that codes for an RNA that can be translated into a protein.
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SO Term
SO:0001831 | protein_hmm_match
Description: A match to a protein HMM such as pfam.
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SO Term
SO:0001955 | protein_stability_element
Description: A polypeptide region that proves structure in a protein that affects the stability of the protein.
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SO Term
SO:0000633 | monocistronic_mRNA
Description: An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap.
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SO Term
SO:0001968 | coding_transcript_variant
Description: A transcript variant of a protein coding gene.
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SO Term
SO:0002112 | coding_transcript_with_retained_intron
Description: A protein coding transcript containing a retained intron.
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SO Term
SO:0000410 | protein_binding_site
Description: A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules.
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SO Term
SO:0000279 | transcript_bound_by_protein
Description: A transcript that is bound by a protein.
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SO Term
SO:0001818 | protein_altering_variant
Description: A sequence_variant which is predicted to change the protein encoded in the coding sequence.
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SO Term
SO:0000467 | post_translationally_regulated_by_protein_stability
Description: An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein.
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SO Term
SO:0000469 | post_translationally_regulated_by_protein_modification
Description: An attribute describing a gene sequence where the resulting protein is modified to regulate it.
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SO Term
SO:0001215 | coding_region_of_exon
Description: The region of an exon that encodes for protein sequence.
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SO Term
SO:0001654 | nucleotide_to_protein_binding_site
Description: A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues.
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SO Term
SO:0002249 | mature_protein_region_of_CDS
Description: A CDS region corresponding to a mature protein region of a polypeptide.
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SO Term
SO:0000120 | protein_coding_primary_transcript
Description: A primary transcript that, at least in part, encodes one or more proteins.
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SO Term
SO:0000729 | intein_containing
Description: An attribute of protein-coding genes where the initial protein product contains an intein.
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SO Term
SO:0001992 | nonsynonymous_variant
Description: A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change.
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SO Term
SO:0001811 | phosphorylation_site
Description: A post-translationally modified region in which residues of the protein are modified by phosphorylation.
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SO Term
SO:0001697 | ChIP_seq_region
Description: A region of sequence identified by CHiP seq technology to contain a protein binding site.
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SO Term
SO:0001737 | histone_acylation_region
Description: A histone modification, whereby the histone protein is acylated at multiple sites in a region.
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SO Term
SO:0002029 | tnaORF
Description: A translated ORF encoded entirely within the antisense strand of a known protein coding gene.
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SO Term
SO:0000319 | stop_codon
Description: In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis.
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SO Term
SO:0002215 | Zas1_recognition_motif
Description: A DNA motif to which the S. pombe Zas1 protein binds. The consensus sequence is 5'-(Y)CCCCAY-3'.
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SO Term
SO:0000419 | mature_protein_region
Description: The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide.
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SO Term
SO:0000655 | ncRNA
Description: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.
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SO Term
SO:0001809 | signal_anchor
Description: A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane.
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SO Term
SO:0001734 | H3K4_methylation_site
Description: A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated.
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SO Term
SO:0001705 | H3K4_monomethylation_site
Description: A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated.
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SO Term
SO:0002048 | disabled_reading_frame
Description: A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons).
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SO Term
SO:0001706 | H3K4_trimethylation
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated.
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SO Term
SO:0001713 | H4K20_monomethylation_site
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated.
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SO Term
SO:0001714 | H2BK5_monomethylation_site
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated.
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SO Term
SO:0001719 | H3K23_acetylation_site
Description: A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001856 | CCAAT_motif
Description: A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels.
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SO Term
SO:0001935 | H3K20_trimethylation_site
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated.
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SO Term
SO:0001937 | H2BK12_acetylation_site
Description: A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated.
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SO Term
SO:0001947 | H3R2_monomethylation_site
Description: A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated.
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SO Term
SO:0001948 | H3R2_dimethylation_site
Description: A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated.
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SO Term
SO:0001949 | H4R3_dimethylation_site
Description: A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated.
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SO Term
SO:0001950 | H4K4_trimethylation_site
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated.
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SO Term
SO:0001951 | H3K23_dimethylation_site
Description: A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated.
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SO Term
SO:0001181 | Bruno_response_element
Description: A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs.
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SO Term
SO:0001703 | H3K9_acetylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001704 | H3K14_acetylation_site
Description: A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001736 | H3K9_methylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001707 | H3K9_trimethylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001732 | H3K27_methylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001708 | H3K27_monomethylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
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SO Term
SO:0001709 | H3K27_trimethylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001735 | H3K79_methylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001711 | H3K79_dimethylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated.
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SO Term
SO:0001712 | H3K79_trimethylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001718 | H3K18_acetylation_site
Description: A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001733 | H3K36_methylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001722 | H3K36_monomethylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
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SO Term
SO:0001723 | H3K36_dimethylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated.
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SO Term
SO:0001724 | H3K36_trimethylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001725 | H3K4_dimethylation_site
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated.
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SO Term
SO:0001726 | H3K27_dimethylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated.
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SO Term
SO:0001727 | H3K9_monomethylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
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SO Term
SO:0001729 | H4K16_acetylation_site
Description: A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001730 | H4K5_acetylation_site
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001731 | H4K8_acetylation_site
Description: A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001936 | H3K36_acetylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001938 | H2AK5_acetylation_site
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated.
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SO:0001939 | H4K12_acetylation_site
Description: A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001940 | H2BK120_acetylation_site
Description: A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated.
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SO:0001941 | H4K91_acetylation_site
Description: A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO:0001942 | H2BK20_acetylation_site
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated.
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SO Term
SO:0001943 | H3K4_acetylation_site
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001944 | H2AK9_acetylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated.
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SO:0001945 | H3K56_acetylation_site
Description: A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001946 | H2BK15_acetylation_site
Description: A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated.
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SO Term
SO:0002049 | H3K27_acetylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0002145 | H2AZK4_acetylation_site
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
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SO Term
SO:0002146 | H2AZK7_acetylation_site
Description: A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
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SO:0002147 | H2AZK11_acetylation_site
Description: A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
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SO:0002148 | H2AZK13_acetylation_site
Description: A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
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SO:0002149 | H2AZK15_acetylation_site
Description: A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated.
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SO Term
SO:0002164 | H2BK5_acetylation_site
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated.
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SO Term
SO:0001710 | H3K79_monomethylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated.
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SO Term
SO:0001728 | H3K9_dimethylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated.
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SO Term
SO:0000725 | transit_peptide
Description: The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle).
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SO Term
SO:0002132 | sense_overlap_ncRNA
Description: A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence.
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SO Term
SO:0002282 | Transib_TIR_transposon
Description: Terminal inverted repeat (TIR) transposons of the superfamily Transib contain the DDE motif, which is related to the RAG1 protein involved in V(D)J recombination.
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SO Term
SO:0000418 | signal_peptide
Description: The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components.
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SO Term
SO:0001700 | histone_modification
Description: Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation.
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SO Term
SO:0001083 | non_adjacent_residues
Description: Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them.
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SO Term
SO:0002114 | NMD_transcript
Description: A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay.
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SO Term
SO:0001089 | post_translationally_modified_region
Description: A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein.
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SO Term
SO:0001806 | ER_retention_signal
Description: A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL.
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SO Term
SO:0001807 | KEN_box
Description: A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN.
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SO Term
SO:0001128 | polypeptide_turn_motif
Description: A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues.
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SO Term
SO:0000417 | polypeptide_domain
Description: A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution.
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