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Search results 201 to 300 out of 103331 for seed protein

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Category: OntologyTerm
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Type Details Score
Ontology Term
TO:0000761 | seedling hypocotyl green with bronze band
Description: A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green with a bronze band.
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Ontology Term
CO_338:0000215 | Dots on seed coat - Method
Description: Visual observation (present, absent)
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Ontology Term
CO_338:0000103 | Seed yield per plant - Method
Description: Averaged weight of air-dried seeds harvested from each plant
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Ontology Term
CO_338:0000101 | Seed yield per plot - Method
Description: Weight of seed harvested from each plot
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Ontology Term
Pfam:PF06232 | Embryo-specific protein 3, (ATS3)
Description: This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 (Arabidopsis thaliana seed gene 3) is expressed in a pattern similar to the Arabidopsis seed storage protein genes [1].
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Ontology Term
Pfam:PF12315 | Protein DA1
Description: Proteins in this family include protein DA1 and its homologues. In Arabidopsis thaliana, DA1 is an ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. It may act maternally to control seed mass [1].
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Ontology Term
Pfam:PF00190 | Cupin
Description: This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
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Ontology Term
Pfam:PF10714 | Late embryogenesis abundant protein 18
Description: This is a family of late embryogenesis-abundant proteins There is high accumulation of this protein in dry seeds, and in the roots of full-grown plants in response to dehydration and ABA (abscisic acid application) treatments [1]. This LEA protein disappears after germination. It accumulates in growing regions of well irrigated hypocotyls and meristems suggesting a role in seedling growth resumption on rehydration [2]. As a group the LEA proteins are highly hydrophilic, contain a high percentage of glycine residues, lack Cys and Trp residues and do not coagulate upon exposure to high temperature, and for these reasons are considered to be members of a group of proteins called hydrophilins [3]. Expression of the protein is negatively regulated during etiolating growth, particularly in roots, in contrast to its expression patterns during normal growth [4].
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Ontology Term
Pfam:PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Description: The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
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Ontology Term
Pfam:PF05042 | Caleosin related protein
Description: This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies [1]. This family is probably related to EF hands Pfam:PF00036.
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Ontology Term
PO:0025470 | plant embryo cotyledon
Description: A cotyledon (PO:0020030) that is part of a plant embryo (PO:0009009).
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Ontology Term
Pfam:PF00407 | Pathogenesis-related protein Bet v 1 family
Description: This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10 [2]: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1 (Swiss:Q8H1L1), an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones [3]. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine [4]. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber [4]. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens (Swiss:Q9AXI3).
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Ontology Term
PO:0020061 | coma
Description: A portion of seed coat epidermis (PO:0006048) that consists of multiple seed trichomes (PO:0004511) at the seed micropyle (PO:0006334).
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Ontology Term
TO:0000344 | days to flowering trait
Description: A flowering time trait (TO:0002616) which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence).
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Ontology Term
Pfam:PF04576 | Zein-binding
Description: This domain binds to zein proteins, Pfam:PF01559 [1]. Zein proteins are seed storage proteins.
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Ontology Term
Pfam:PF05264 | Choristoneura fumiferana antifreeze protein (CfAFP)
Description: This family consists of several antifreeze proteins from the insect Choristoneura fumiferana (Spruce budworm). Antifreeze proteins (AFPs) and antifreeze glycoproteins (AFGPs) are present in many organisms that must survive sub-zero temperatures. These proteins bind to seed ice crystals and inhibit their growth through an adsorption-inhibition mechanism [1].
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Ontology Term
Pfam:PF02987 | Late embryogenesis abundant protein
Description: Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown.
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Ontology Term
Pfam:PF01439 | Metallothionein
Description: Members of this family are metallothioneins. These proteins are cysteine rich proteins that bind to heavy metals. Members of this family appear to be closest to Class II metallothioneins, seed Pfam:PF00131.
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Ontology Term
CO_338:0000159 | Protein % - Method
Description: In laboratory, analyse the whole seed crude protein content
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Ontology Term
TO:0002653 | endosperm storage protein content
Description: Assay for the amount of seed storage protein present in the endosperm.
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Ontology Term
TO:0000109 | endosperm storage protein-2 content
Description: Assay for amount of 57kDa seed storage protein present in the endosperm.
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Ontology Term
PO:0009090 | aril
Description: An arilloid that is an outgrowth of a seed from a seed funicle.
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Ontology Term
TO:0010001 | percent germination
Description: The percentage of seeds that germinate against the total number of seeds planted.
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Ontology Term
TO:0000107 | endosperm storage protein-1 content
Description: Assay for the amount of 13kDa seed storage protein present in the endosperm.
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Ontology Term
PO:0007043 | hypocotyl emergence stage
Description: A seedling development stage (PO:0007131) during which the hypocotyl (PO:0020100) emerges from the seed coat (PO:0009088).
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Ontology Term
PO:0007049 | cotyledon emergence stage
Description: A seedling development stage (PO:0007131) during which the cotyledon (PO:0020030) emerges from the seed coat (PO:0009088).
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Ontology Term
PO:0007054 | epicotyl emergence stage
Description: A seedling development stage (PO:0007131) during which the epicotyl (PO:0020035) emerges from the seed coat (PO:0009088).
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Ontology Term
TO:0006069 | DSDS50
Description: A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50).
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Ontology Term
PO:0006050 | exotesta
Description: A portion of seed coat epidermis (PO:0006048) which is part of the seed coat (PO:0009088), and develops from the outer surface of the outer integument (PO:0020023).
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Ontology Term
PO:0006051 | endotesta
Description: A portion of seed coat epidermis (PO:0006048) which is part of a seed coat (PO:0009088) and develops from the inner epidermis of the outer integument (PO:0020023).
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Ontology Term
PO:0006218 | exotegmen
Description: A portion of seed coat epidermis (PO:0006048) which is part of the seed coat (PO:0009088) and develops from the outer surface of the inner integument (PO:0020022).
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Ontology Term
PO:0006219 | endotegmen
Description: A portion of seed coat epidermis (PO:0006048) which is part of the seed coat (PO:0009088) and develops from the inner epidermis of the inner integument (PO:0020022).
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Ontology Term
TO:0000619 | vivipary
Description: A phenomenon associated to the seeds that germinate before becoming detached or harvested from the parent plant. Thus the germination occurs before the seed undergoes dormancy.
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Ontology Term
Pfam:PF04484 | QWRF family
Description: AUG8 belongs to the plant QWRF motif-containing protein family, which also includes microtubule-associated protein ENDOSPERM DEFECTIVE 1 [1, 2] and SNOWY COTYLEDON 3 [3]. AUG8 binds the microtubule plus-end and participates in the reorientation of microtubules in hypocotyls (the stem of a germinating seedling) [4,5].
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Ontology Term
Pfam:PF03168 | Late embryogenesis abundant protein
Description: Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in Pfam:PF02987. The family DUF1511, Pfam:PF07427, has now been merged into this family.
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Ontology Term
CO_338:0000036 | Botrytis grey mold resistance
Description: Causative agent:Botrytis cinerea. It causes water soaked and irregular lesions on the pod that contain either small shriveled seeds or no seeds at all, lesions girdle the stem completely
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Ontology Term
CO_338:0000037 | Fusarium wilt resistance
Description: Causative agent:Fusarium oxysporum f.sp.ciceris. It causes seedlings to die, seedlings collapse and lie flat on the ground, when uprooted plants show uneven shrinking of the stem above and below the collar region
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Ontology Term
CO_338:0000039 | Ascochyta blight resistance
Description: Causative agent:Ascochyta rabiei. It causes dark brown lesions at the base of the stem of emerging seedlings, seen during the flowering and podding phases of blighted plants in the field, affected seedlings die
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Ontology Term
Pfam:PF00035 | Double-stranded RNA binding motif
Description: Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.
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Ontology Term
PO:0005360 | aleurone layer
Description: A portion of plant tissue (PO:0009007) that is the outermost layer of endosperm (PO:0009089) in a seed (PO:0009010), its cells being characterized by presence of protein bodies (GO:0042735).
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Ontology Term
Pfam:PF05633 | Protein ROH1-like
Description: This family consists of several plant proteins and includes RHO1, an interactor of the exocyst subunit Exo70A1 and has been shown to be required for seed coat mucilage deposition [1].
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Ontology Term
Pfam:PF03000 | NPH3 family
Description: Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay [1].
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Ontology Term
Pfam:PF04702 | Vicilin N terminal region
Description: This region is found in plant seed storage proteins, N-terminal to the Cupin domain (Pfam:PF00190). In Macadamia integrifolia (Swiss:Q9SPL4), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [1].
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Ontology Term
Pfam:PF12498 | Basic leucine-zipper C terminal
Description: This family of proteins is found in eukaryotes. Proteins in this family are typically between 174 and 411 amino acids in length. The family is found in association with Pfam:PF00170. There is a conserved KVK sequence motif. There is a single completely conserved residue K that may be functionally important. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin.
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Ontology Term
PO:0001081 | mature plant embryo stage
Description: A plant embryo development stage (PO:0007631) during the interval between when a plant embryo (PO:0009009) has stopped developmental growth involved in morphogenesis (GO:0060560) and one of the following: the beginning of the seed germination stage (PO:0007057) in seed plants, formation of the first vascular leaf (PO:0009025) in pteridophytes, the beginning of development of a sporangium (PO:0025094) in bryophytes, or the beginning of the formation of a plant organ (PO:0009008) such as a root (PO:0009005), shoot axis (PO:0025029), or vascular leaf (PO:0009025) in a cultured plant embryo (PO:0000010).
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Ontology Term
PO:0007631 | plant embryo development stage
Description: A sporophyte vegetative stage (PO:0007134) that occurs during the interval between the first cell division of a plant zygote (PO:0000423) and one of the following: the beginning of the seed germination stage (PO:0007057) in seed plants, formation of the first vascular leaf (PO:0009025) in pteridophytes, the beginning of development of a sporangium (PO:0025094) in bryophytes, or the beginning of the formation of a plant organ (PO:0009008) such as a root (PO:0009005), shoot axis (PO:0025029), or vascular leaf (PO:0009025) in a cultured plant embryo (PO:0000010).
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Ontology Term
PO:0025377 | plant embryo dormant stage
Description: A mature plant embryo stage (PO:0001081) during the interval between when a plant embryo (PO:0009009) begins a dormancy process (GO:0022611) and one of the following: the beginning of the seed germination stage (PO:0007057) in seed plants, formation of the first vascular leaf (PO:0009025) in pteridophytes, the beginning of development of a sporangium (PO:0025094) in bryophytes, or the beginning of the formation of a plant organ (PO:0009008) such as a root (PO:0009005), shoot axis (PO:0025029), or vascular leaf (PO:0009025) in a cultured plant embryo (PO:0000010).
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Ontology Term
Pfam:PF19439 | CLEC16A C-terminal
Description: This is the C-terminal domain of C-type lectin domain family 16, member A (CLEC16A, the Drosophila orthologue Ema and GOP-1 in C. elegans), an evolutionarily conserved endosomal membrane protein required for trafficking of fluid-phase and receptor-mediated endocytic cargos. It is required for mitophagy, autophagy and endosome maturation [1-3]. This protein has been identified as a susceptibility gene for autoimmune diseases like type 1 diabetes, multiple sclerosis and adrenal dysfunction. This domain is also present in GFS9/TT9 (TRANSPARENT TESTA 9) a protein from Arabidopsis required for vacuolar development through membrane fusion at vacuoles and for membrane trafficking machinery and accumulation of flavonoids in the seed coat [4].
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Ontology Term
Pfam:PF00073 | picornavirus capsid protein
Description: CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
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Ontology Term
Pfam:PF18647 | Alpha-galactosyl-binding fungal lectin
Description: This domain can be found in alpha-galactosyl binding Lyophyllum decastes lectin (LDL). It is composed of five-stranded anti-parallel beta-sheet and two alpha-helices and contain conserved cysteines responsible for disulfide bridges. The protein with the highest similarity is ginkbilobin-2, a protein with apparent anti-fungal properties isolated from the seeds of the ginkgo biloba tree. Homologous sequences can be divided into two groups, where the proteins in the group with closest homology to LDL only consist of a single LDL-like domain. In the second group of sequences, the LDL-like domain is found at the C-terminal end of a larger domain with homology to members of the Ser, Gly, Asn, His consensus sequence (SGNH)-hydrolase family, which is part of the Gly, Asp, Ser, Leu motif-esterase/lipase superfamily [1].
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Ontology Term
Pfam:PF07107 | Wound-induced protein WI12
Description: This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Swiss:Q9XES3). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [1]. This family seems partly related to the NTF2-like superfamily.
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Ontology Term
Pfam:PF03083 | Sugar efflux transporter for intercellular exchange
Description: This family includes proteins such as drosophila saliva [1], MtN3 involved in root nodule development [3] and a protein involved in activation and expression of recombination activation genes (RAGs) [2]. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This family contains a region of two transmembrane helices that is found in two copies in most members of the family. This family also contains specific sugar efflux transporters that are essential for the maintenance of animal blood glucose levels, plant nectar production, and plant seed and pollen development. In many organisims it meditaes gluose transport; in Arabidopsis it is necessary for pollen viability; and two of the rice homologues are specifically exploited by bacterial pathogens for virulence by means of direct binding of a bacterial effector to the SWEET promoter [4].
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Ontology Term
Pfam:PF14566 | Inositol hexakisphosphate
Description: Inositol hexakisphosphate, often called phytate, is found in abundance in seeds and acting as an inorganic phosphate reservoir. Phytases are phosphatases that hydrolyze phytate to less-phosphorylated myo-inositol derivatives and inorganic phosphate. The active-site sequence (HCXXGXGR) of the phytase identified from the gut micro-organism Selenomonas ruminantium forms a loop (P loop) at the base of a substrate binding pocket that is characteristic of protein tyrosine phosphatases (PTPs). The depth of this pocket is an important determinant of the substrate specificity of PTPs. In humans this enzyme is thought to aid bone mineralization and salvage the inositol moiety prior to apoptosis [3].
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Ontology Term
Pfam:PF18661 | Avirulence Effector AvrLm4-7
Description: AvrLm4-7 is found in Leptosphaeria maculans, an ascomycete fungus in the dothideomycete group which is responsible for stem canker (blackleg) of Brassica napus (oilseed rape, OSR) and other crucifers. AvrLm4-7 is one of six avirulence genes which encodes a small secreted protein strongly over-expressed at the onset of plant infection. This gene confers a dual recognition specificity by two distinct resistance genes of OSR, Rlm4 and Rlm7 and loss of AvrLm4 avirulence was demonstrated to be associated with a strong fitness cost. Structure and functional analysis of AvrLm4-7 protein show that it contains the motifs RAWG and RYRE, part of a well-structured protein region held together by disulfide bridges. Mutations in the RAWG motif or in the RYRE motif (especially mutations in both motifs) almost abolished the translocation of AvrLm4-7 into cells. Furthermore, loss of recognition of AvrLm4-7 by Rlm4 is caused by the mutation of a single glycine to an arginine residue located in a loop of the protein [1].
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Ontology Term
Pfam:PF11382 | Copper transport outer membrane protein, MctB
Description: Outer membrane channel protein MctB in Mycobacterium tuberculosis is part of a Cu resistance mechanism that ensures low intracellular Cu levels in the bacterium. Human resisitance to bacteria, mediated via IFN-gamma-mediated activation of macrophages, may involve the use of reactive Cu(1) in the presence of hyrodgen peroxide, since acitivated Cu is toxic to bacteria. IFN-gamma stimulates the trafficking of the Cu transporter ATP7a to the vesicles that fuse with phagosomes and these phagosomes are found to have a high Cu content and an increaseed bactericidal activity against E.coli. Using MctB, Mycobacterium tuberculosis may limit the amount of excess Cu within it whole in the host [1].
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Ontology Term
Pfam:PF14479 | Prion-inhibition and propagation
Description: This N-terminal region, HeLo, has a prion-inhibitory effect in cis on its own prion-forming domain (PFD) and in trans on HET-s prion propagation [1]. The domain is found exclusively in the fungal kingdom. Its structure, as it occurs in the HET-s/HET-S proteins, consists of two bundles of alpha-helices that pack into a single globular domain [1]. The domain boundary determined from its structure and from protease-resistance experiments overlaps with the C-terminal prion-forming domain of HET-s (PF11558 [2]. The HeLo domains of HET-s and HET-S are very similar and their few differences (and not the prion-forming domains) determine the compatibility-phenotype of the fungi in which the proteins are expressed. The mechanism of the HeLo domain-function in heterokaryon-incompatibility is still under investigation, however the HeLo domain is found in similar protein architectures as other cell death and apoptosis-inducing domains. The only other HeLo protein to which a function has been associated is LopB from L. maculans [3]. Although its specific role in L. maculans is unknown, LopB- mutants have impaired ability to form lesions on oilseed rape. The HeLo domain is not related to the HET domain (PF06985) which is another domain involved in heterokaryon incompatibility.
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Ontology Term
Pfam:PF12699 | phiKZ-like phage internal head proteins
Description: Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family [1]. Members of the family reside in the head [2] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head. The alignment and HMM model exclude most of the propeptide region, but include the cleavage sites. The first 100 residues, including the cleavage sites, constitute the most conservative part of the seed alignment.
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Ontology Term
TO:0000718 | wrinkled grain
Description: A grain quality trait (TO:0000162) where the grain (caryopsis fruit; PO:0030104) has a wrinkled appearance, usually from a lack of starch accumulation.
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Ontology Term
CO_338:0000070 | Taste
Description: Taste of seed for Consuming
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Ontology Term
CO_338:0000058 | No. of fertile pods per plant
Description: Number of pods with seed
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Ontology Term
TO:0000202 | germination ratio
Description: Ratio of germinated to non-germinated seeds.
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Ontology Term
TO:0000430 | germination rate
Description: Rate of germination of the seed.
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Ontology Term
CO_338:0000061 | Cooking time
Description: Cooking time for dry seed without soaking
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Ontology Term
TO:0000198 | rootless
Description: Absence of roots in the seedling or plant.
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Ontology Term
TO:0006068 | germinability in dark
Description: Measure of the seed's germination ability in dark.
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Ontology Term
CO_338:0000185 | Taste - Method
Description: Tasting the Seed with at least 10 Persons
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Ontology Term
CO_338:0000161 | Cooking time - Method
Description: Number of Minutes taken for seed to cook
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Ontology Term
PO:0004505 | fertilized ovule stage
Description: The earliest stage of seed development immediately following double fertilization.
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Ontology Term
TO:0000234 | radicleless
Description: The embryo of the germinating seed does not produce roots.
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Ontology Term
TO:0000483 | germinability at low temperature
Description: Measure of the seed's germination ability at sub-permissive temperature levels.
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Ontology Term
PO:0020127 | primary root
Description: A root (PO:0009005) that develops directly from a seedling radicle (PO:0020127).
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Ontology Term
TO:0002685 | crown root number
Description: A count of number of crown roots present in the seedling.
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Ontology Term
PO:0005415 | endosperm parenchyma
Description: A portion of seed storage parenchyma that is part of an endosperm.
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Ontology Term
PO:0020056 | tegmen
Description: That part of the seed coat that develops from the inner integument.
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Ontology Term
PO:0019023 | strophiole
Description: An arilloid that is an outgrowth of a seed on a raphe.
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Ontology Term
PO:0030101 | loment fruit
Description: A legume fruit (PO:0030100) which at maturity separates into indehiscent, one-seeded segments.
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Ontology Term
PO:0020060 | caruncle
Description: An arilloid that is an outgrowth of a seed next to the micropyle.
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Ontology Term
TO:0000330 | outcrossing potential
Description: It is a measure of percent seed set on the out-pollinated primary panicle.
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Ontology Term
TO:0000498 | female fertility restoration trait
Description: Describes the extent of female fertility restoration in terms of percent seed set.
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Ontology Term
TO:0000967 | hilum morphology trait
Description: A seed morphology trait (TO:0000184) which is a quality of a hilum (PO:0020063).
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Ontology Term
CO_338:0000149 | No. of fertile pods per plant - Method
Description: Average number of pods with seed from 3 or 5 randomly selected plants
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Ontology Term
PO:0020062 | elaiosome
Description: A cardinal organ part that is an oil-secreting outgrowth of a seed or fruit.
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Ontology Term
PO:0025378 | arillode
Description: An arilloid that is an elaborate outgrowth of a seed at the micropylar end.
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Ontology Term
TO:0000189 | embryoless
Description: An embryo morphology trait (TO:0000064) which is the absence of embryo in the developing seed.
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Ontology Term
TO:0002622 | locular tissue trait
Description: The traits observed for the locular tissue present around the seeds as found in Solanaceae.
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Ontology Term
PO:0000012 | apical hook
Description: Hook-like structure which develops at the apical part of the hypocotyl in dark-grown seedlings in dicots.
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Ontology Term
PO:0007015 | radicle emergence stage
Description: A root development stage (PO:0007520) during which a radicle (PO:0020031) emerges from the seed coat (PO:0009088).
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Ontology Term
PO:0007045 | coleoptile emergence stage
Description: A sporophyte vegetative stage (PO:0007134) during which the coleoptile (PO:0020033) emerges from the seed coat (PO:0009088).
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Ontology Term
PO:0025475 | coleorhiza emergence stage
Description: A root development stage (PO:0007520) during which a coleorhiza (PO:0020034) emerges from the seed coat (PO:0009088).
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Ontology Term
PO:0019022 | arilloid
Description: A cardinal part of multi-tissue plant structure (PO:0025498) that is a fleshy outgrowth of a seed (PO:0009010).
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Ontology Term
TO:0000587 | endosperm quality
Description: A seed quality trait (TO:0000931) which is the quality of the endosperm (PO:0009089) texture, content, composition, size, etc.
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Ontology Term
TO:0000195 | shootless embryo
Description: A plant embryo morphology trait (TO:0000064) which is an embryo of the germinating seed not producing a shoot.
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Ontology Term
TO:0000231 | endospermless
Description: An endosperm morphology trait (TO:0000575) which is the absence of endosperm (PO:0009089) in the seed (PO:0009010) or grain.
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Ontology Term
TO:0000602 | total fat content
Description: The total fat or lipid content of present in the plant or the plant part such as seed.
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Ontology Term
TO:0002735 | straighthead
Description: Malformed inflorescence (panicle in rice), by staying upright/straight at the time of maturity and may carry infertile seeds.
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Ontology Term
PO:0009089 | endosperm
Description: A portion of plant tissue (PO:0009007) which is a maximal portion of nutritive plant tissue in a seed (PO:0009010).
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Ontology Term
PO:0020035 | epicotyl
Description: The first stem internode (PO:0020142) above the cotyledonary node (PO:0025321) of a plant embryo (PO:0009009) or a seedling (PO:0000003).
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Ontology Term
PO:0020058 | perisperm
Description: A portion of plant tissue (PO:0009007) which is diploid nutritive tissue in an angiosperm seed derived from nucellar tissue.
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Ontology Term
PO:0020030 | cotyledon
Description: A vascular leaf (PO:0009025) formed at the first shoot node (PO:0005004) of a plant embryo (PO:0009009) or a seedling (PO:0000003).
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Ontology Term
PO:0000200 | micropylar endosperm
Description: A portion of plant tissue (PO:0009007) that is the region of the endosperm closest to the micropyle of the seed.
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USDA
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The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
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