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Search results 6101 to 6200 out of 30763 for seed protein

Category restricted to ProteinDomain (x)

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Category: ProteinDomain
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Type Details Score
Protein Domain
IPR022235
Name: Protein of unknown function DUF3760
Type: Family
Description: This family is found in fungi, and is typically between 46 and 64 amino acids in length.
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Protein Domain
IPR022234
Name: Protein of unknown function DUF3759
Type: Family
Description: This family of proteins is found in eukaryotes. Proteins in this family are typically between 107 and 132 amino acids in length. There is a single completely conserved residue H that may be functionally important.
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Protein Domain
IPR022236
Name: Protein of unknown function DUF3761
Type: Family
Description: This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 157 amino acids in length.
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Protein Domain
IPR022239
Name: Protein of unknown function DUF3762
Type: Family
Description: This domain family is found in viruses, and is approximately 80 amino acids in length. The family is found in association with .
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Protein Domain
IPR022222
Name: Protein of unknown function DUF3747
Type: Family
Description: This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
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Protein Domain
IPR022224
Name: Protein of unknown function DUF3750
Type: Family
Description: This family of proteins is found in bacteria. Proteins in this family are typically between 175 and 265 amino acids in length.
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Protein Domain
IPR022223
Name: Protein of unknown function DUF3748
Type: Family
Description: This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
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Protein Domain
IPR009272
Name: Protein of unknown function DUF929
Type: Family
Description: This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
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Protein Domain
IPR010224
Name: ATP binding protein MinD, archaea
Type: Family
Description: This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologues are unknown.
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Protein Domain
IPR022213
Name: Protein of unknown function DUF3742
Type: Family
Description: This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
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Protein Domain
IPR036854
Name: Photosystem II protein D1/D2 superfamily
Type: Homologous_superfamily
Description: The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors [ ]. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits [ ]. RC consists of three subunits: L (light), M (medium), and H (heavy). SubunitsL and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain [ ]. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry describes the photosynthetic reaction centre L and M subunits, and the homologous D1 (PsbA) and D2 (PsbD) photosystem II (PSII) reaction centre proteins from cyanobacteria, algae and plants. The D1 and D2 proteins only show approximately 15% sequence homology with the L and M subunits, however the conserved amino acids correspond to the binding sites of the phytochemically active cofactors. As a result, the reaction centres (RCs) of purple photosynthetic bacteria and PSII display considerable structural similarity in terms of cofactor organisation.The D1 and D2 proteins occur as a heterodimer that form the reaction core of PSII, a multisubunit protein-pigment complex containing over forty different cofactors, which are anchored in the cell membrane in cyanobacteria, and in the thylakoid membrane in algae and plants. Upon absorption of light energy, the D1/D2 heterodimer undergoes charge separation, and the electrons are transferred from the primary donor (chlorophyll a) via pheophytin to the primary acceptor quinone Qa, then to the secondary acceptor Qb, which like the bacterial system, culminates in the production of ATP. However, PSII has an additional function over the bacterial system. At the oxidising side of PSII, a redox-active residue in the D1 protein reduces P680, the oxidised tyrosine then withdrawing electrons from a manganese cluster, which in turn withdraw electrons from water, leading to the splitting of water and the formation of molecular oxygen. PSII thus provides a source of electrons that can be used by photosystem I to produce the reducing power (NADPH) required to convert CO2 to glucose [ , ].Also in this entry is the light-dependent chlorophyll f synthase (ChlF) from cyanobacteria such as Chlorogloeopsis fritschii. ChlF synthesizes chlorophyll f or chlorophyllide f, which is able to absorb far red light, probably by oxidation of chlorophyll a or chlorophyllide a and reduction of plastoquinone [ ].
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Protein Domain
IPR009242
Name: Protein of unknown function DUF896
Type: Family
Description: In Bacillus subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC [ ]. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in Gram-positive Firmicutes. Structures show that the N terminus is composed of two α-helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex []. Structural modelling suggests this domain may bind nucleic acids []. This family is also known as UPF0291.
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Protein Domain
IPR022201
Name: Protein of unknown function DUF3726
Type: Family
Description: This domain family is found in bacteria and eukaryotes, and is approximately 80 amino acids in length. There is a single completely conserved residue E that may be functionally important.
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Protein Domain
IPR022205
Name: Protein of unknown function DUF3732
Type: Family
Description: This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
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Protein Domain
IPR022208
Name: Protein of unknown function DUF3737
Type: Family
Description: This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
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Protein Domain
IPR022273
Name: ParB-related, ThiF-related cassette, protein E
Type: Domain
Description: PRTRC (ParB-Related, ThiF-Related Cassette) is a novel genetic system characterised by six or seven major proteins, included a ParB homologue and a ThiF homologue. It is often found on plasmids. PRTRC protein E averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. The model in this entry does not include the low-complexity region.
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Protein Domain
IPR009296
Name: Protein of unknown function DUF951
Type: Family
Description: This family consists of several short hypothetical bacterial proteins of unknown function.
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Protein Domain
IPR046239
Name: Protein of unknown function DUF6272
Type: Family
Description: This family of proteins predominantly found in bacteria is functionally uncharacterised. Proteins in this family have two conserved sequence motifs, ExxQN and GAGLG.
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Protein Domain
IPR046238
Name: Protein of unknown function DUF6271
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000093) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the meilingmycin biosynthetic gene cluster from Streptomyces nanchangensis [ , ]. This family appears to be predominantly found in bacteria.
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Protein Domain
IPR046237
Name: Protein of unknown function DUF6270
Type: Family
Description: This family of proteins found in bacteria and archaea is functionally uncharacterised. Proteins in this family are typically between 258 and 528 amino acids in length. There is a conserved GSC sequence motif.
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Protein Domain
IPR046236
Name: Protein of unknown function DUF6269
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001975) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide). It includes a member from the atratumycin biosynthetic gene cluster from Streptomyces atratus [ ].
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Protein Domain
IPR046234
Name: Protein of unknown function DUF6267
Type: Family
Description: This family of proteins found in myoviruses is functionally uncharacterised.
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Protein Domain
IPR046233
Name: Protein of unknown function DUF6266
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. There are two conserved sequence motifs: AMSY and DNS.
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Protein Domain
IPR010281
Name: Protein of unknown function DUF885
Type: Family
Description: This family consists of hypothetical bacterial proteins.
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Protein Domain
IPR046231
Name: Protein of unknown function DUF6264
Type: Family
Description: This family of putative integral membrane proteins is functionally uncharacterised. This family of proteins is found mostly in Actinobacteria.
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Protein Domain
IPR046230
Name: Protein of unknown function DUF6263
Type: Family
Description: This family of proteins found in bacteria is functionally uncharacterised. Proteins in this family are typically between 298 and 349 amino acids in length. There is a conserved sequence pattern PxxxI/VxxGxxW.
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Protein Domain
IPR046228
Name: Protein of unknown function DUF6261
Type: Family
Description: This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 246 and 334 amino acids in length. Some members are thought to be hemagglutinin-related proteins.
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Protein Domain
IPR022267
Name: Accessory Sec system protein Asp2
Type: Family
Description: Proteins in this entry form part of an accessory Sec system which is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus [ , ]. Asp2 directly interacts with Aps1 and Asp3 to form a complex and stabilizes it; this complex is essential for substrate export. Asp2 and Asp3 interact directly with GspB and may function in part as chaperones in the early phase of GspB transport []. Moreover, Asp2 acetylates the GlcNAc residues on GspB. Asp1/2/3 complex stimulates the ATPase activity of SecA2 and also affects the export and glycosylation of pneumococcal serine-rich repeat proteins (PrsPs) [ ].
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Protein Domain
IPR046227
Name: Protein of unknown function DUF6260
Type: Family
Description: This family of proteins, functionally uncharacterised, is found in bacteria and viruses. Some members are thought to be coat proteins.
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Protein Domain
IPR046225
Name: Protein of unknown function DUF6258
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000974) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide. It includes a member from the crocacin biosynthetic gene cluster from Chondromyces crocatus [ ].
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Protein Domain
IPR046224
Name: Protein of unknown function DUF6257
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000700) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the istamycin biosynthetic gene cluster from Streptomyces tenjimariensis [ ].
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Protein Domain
IPR046223
Name: Protein of unknown function DUF6256
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001215) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide). It includes a member from the conglobatin biosynthetic gene cluster from Streptomyces conglobatus [ ].
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Protein Domain
IPR046222
Name: Protein of unknown function DUF6255
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001662) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the mediomycin A biosynthetic gene cluster from Kitasatospora mediocidica [ ].
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Protein Domain
IPR046221
Name: Protein of unknown function DUF6254
Type: Family
Description: This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 39 and 59 amino acids in length. This family contains a highly conserved sequence HGKV/IKS/T.
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Protein Domain
IPR046220
Name: Protein of unknown function DUF6253
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001778) is described by MIBiG as an example of the following biosynthetic class, other (unspecified). It includes a member from the showdomycin biosynthetic gene cluster from Streptomyces showdoensis [ ].
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Protein Domain
IPR010295
Name: Protein of unknown function DUF898
Type: Family
Description: This family consists of several bacterial proteins of unknown function. Some of the family, including YjgN, are putative transmembrane proteins.
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Protein Domain
IPR009273
Name: Protein of unknown function DUF930
Type: Family
Description: This is a family of proteins with undetermined function from bacteria, mainly from the Rhizobiales order.
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Protein Domain
IPR046219
Name: Protein of unknown function DUF6252
Type: Family
Description: This family of proteins found mainly in Bacteroidetes is functionally uncharacterised. A conserved glycine residue and the conserved sequences GTF and GxF can be found at the C terminus.
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Protein Domain
IPR022254
Name: Protein of unknown function DUF3775
Type: Family
Description: This family is found in bacteria. Proteins in this family have a single completely conserved residue G that may be functionally important.
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Protein Domain
IPR046218
Name: Protein of unknown function DUF6251
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000700) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the istamycin biosynthetic gene cluster from Streptomyces tenjimariensis [ ].
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Protein Domain
IPR009279
Name: Protein of unknown function DUF935
Type: Family
Description: This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu Gp29 protein .
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Protein Domain
IPR022259
Name: Accessory Sec system protein Asp3
Type: Family
Description: Asp3 is part of an accessory SecA2/SecY2 system, which is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus [ ]. SecA2/SecY2 system specifically required to export SraP, a serine-rich repeat cell wall protein encoded upstream in the same operon []. In Streptococcus gordonii, it may also function in part as chaperones in the early phase of GspB (a serine-rich glycoprotein adhesin) transport [].
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Protein Domain
IPR046215
Name: Protein of unknown function DUF6248
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus [ ].
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Protein Domain
IPR046214
Name: Protein of unknown function DUF6247
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000345) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide. It includes a member from the eponemycin biosynthetic gene cluster from Streptomyces hygroscopicus [ , ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046213
Name: Protein of unknown function DUF6246
Type: Family
Description: This family of proteins found in bacteria and viruses is functionally uncharacterised.
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Protein Domain
IPR046212
Name: Protein of unknown function DUF6245
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000700) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the istamycin biosynthetic gene cluster from Streptomyces tenjimariensis [ ].
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Protein Domain
IPR046211
Name: Protein of unknown function DUF6244
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000267) is described by MIBiG as an example of the following biosynthetic classes, polyketide and saccharide. This entry includes a member from the saquayamycin Z biosynthetic gene cluster from Micromonospora sp. Tu 6368 [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046210
Name: Protein of unknown function DUF6243
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001931) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the carrimycin biosynthetic gene cluster from unidentified unclassified sequences. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR036894
Name: Nucleoid-associated protein YbaB-like domain superfamily
Type: Homologous_superfamily
Description: This entry represents a domain superfamily of DNA-binding proteins. It is restricted to bacteria and plants. Members of this family form homodimers which bind DNA via a tweezer-like structure [ , , ]. The conformation of the DNA is changed when bound to these proteins []. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage [ ]. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein.The crystal structure YbaB from Haemophilus influenzae revealed a tight dimer with a three-layer structure (beta/alpha/beta) [ ].
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Protein Domain
IPR022240
Name: Protein of unknown function DUF3764
Type: Family
Description: This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
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Protein Domain
IPR046208
Name: Protein of unknown function DUF6241
Type: Family
Description: This family of proteins is functionally uncharacterised and it is found mostly in Firmicutes. There are some conserved sequences: HQK and KWG at the N-terminal, and HNxxW near the C-terminal.
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Protein Domain
IPR022243
Name: Protein of unknown function DUF3768
Type: Family
Description: This family of proteins is found in bacteria. Proteins in this family are typically between 108 and 129 amino acids in length. There are two conserved sequence motifs: NDP and RVLT.
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Protein Domain
IPR046207
Name: Protein of unknown function DUF6240
Type: Family
Description: This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 969 and 1090 amino acids in length. Some members of this family are thought to be related to the Flagellar hook-length control protein FliK.
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Protein Domain
IPR046206
Name: Protein of unknown function DUF6239
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000081) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the kedarcidin biosynthetic gene cluster from Streptoalloteichus sp. ATCC 53650 [ , ].
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Protein Domain
IPR046205
Name: Protein of unknown function DUF6238
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus [ ]. This family appears to be predominantly found in bacteria.
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Protein Domain
IPR046204
Name: Protein of unknown function DUF6237
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001214) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide). It includes a member from the marformycin A biosynthetic gene cluster from Streptomyces drozdowiczii [ ].
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Protein Domain
IPR046203
Name: Protein of unknown function DUF6236
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001432) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide. It includes a member from the myxochromide D biosynthetic gene cluster from Stigmatella erecta [ ].
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Protein Domain
IPR046202
Name: Protein of unknown function DUF6235
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001503) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the amycolamycin A biosynthetic gene cluster from Amycolatopsis sp. [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046201
Name: Protein of unknown function DUF6234
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000709) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the neomycin biosynthetic gene cluster from Streptomyces fradiae ATCC 10745 = DSM 40063 [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046200
Name: Protein of unknown function DUF6233
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC0001973 in MIBiG). It includes a member from the fervenulin biosynthetic gene cluster from Streptomyces hiroshimensis [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR010273
Name: Protein of unknown function DUF881
Type: Family
Description: This family consists of a series of hypothetical bacterial proteins. One of the family members from Bacillus subtilis is thought to be involved in cell division and sporulation [ ].
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Protein Domain
IPR046279
Name: Protein of unknown function DUF6312
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001772) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the scytophycin biosynthetic gene cluster from Anabaena sp. UHCC 0451 [ ].
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Protein Domain
IPR046276
Name: Protein of unknown function DUF6309
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000078) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the incednine biosynthetic gene cluster from Streptomyces sp. ML694-90F3 [ ].
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Protein Domain
IPR046275
Name: Protein of unknown function DUF6308
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000699) is described by MIBiG as an example of the following biosynthetic class, saccharide, in particular the hygromycin A biosynthetic gene cluster from Streptomyces hygroscopicus subsp. hygroscopicus [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046274
Name: Protein of unknown function DUF6307
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000202) is described by MIBiG as an example of the following biosynthetic class, polyketide.
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Protein Domain
IPR046271
Name: Protein of unknown function DUF6304
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000262) is described by MIBiG as an example of the following biosynthetic classes, polyketide and saccharide, in particular the prejadomycin biosynthetic gene cluster from Streptomyces sp. PGA64 [ , ]. This family appears to be predominantly found in bacteria.
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Protein Domain
IPR046270
Name: Protein of unknown function DUF6303
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000700) is described by MIBiG as an example of the following biosynthetic class, saccharide, in particular the istamycin biosynthetic gene cluster from Streptomyces tenjimariensis [ ]. This family appears to be predominantly found in actinobacteria.
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Protein Domain
IPR046269
Name: Protein of unknown function DUF6302
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide, in particular the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus [ ].
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Protein Domain
IPR046268
Name: Protein of unknown function DUF6301
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001381) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the brasilinolide A biosynthetic gene cluster from Nocardia terpenica [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046267
Name: Protein of unknown function DUF6300
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0002024) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular, the nargenicin biosynthetic gene cluster from Nocardia argentinensis [ ]. This family appears to be predominantly found in bacteria and unclassified phages.
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Protein Domain
IPR046264
Name: Protein of unknown function DUF6297
Type: Family
Description: This family of proteins is functionally uncharacterised. Proteins in this family are predominantly found in bacteria and have a conserved sequence motif GPV. Some members of this family are hypothetical ABC transporter permeases.
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Protein Domain
IPR046263
Name: Protein of unknown function DUF6296
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000187) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the asukamycin biosynthetic gene cluster from Streptomyces nodosus subsp. asukaensis [ ]. This family appears to be predominantly found in actinobacteria.
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Protein Domain
IPR046262
Name: Protein of unknown function DUF6295
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001922) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the isoindolinomycin biosynthetic gene cluster from Streptomyces sp. SoC090715LN-16 [ ]. This family appears to be predominantly found in bacteria.
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Protein Domain
IPR046257
Name: Protein of unknown function DUF6290
Type: Family
Description: This family of proteins is functionally uncharacterised, they are predominantly found in bacteria. Proteins in this family presumably contain a ribbon-helix-helix DNA-binding motif.
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Protein Domain
IPR046256
Name: Protein of unknown function DUF6289
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000385) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide), in particular the lysobactin biosynthetic gene cluster from Lysobacter sp. ATCC 53042 [ ].
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Protein Domain
IPR046255
Name: Protein of unknown function DUF6288
Type: Family
Description: This family of bacterial proteins is functionally uncharacterised. Proteins in this family are approximately 800 amino acids in length and they presumably contain PDZ domains.
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Protein Domain
IPR046251
Name: Protein of unknown function DUF6284
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000700) is described by MIBiG as an example of the following biosynthetic class, saccharide, in particular the istamycin biosynthetic gene cluster from Streptomyces tenjimariensis [ ]. This family appears to be predominantly found in Actinoabactteria.
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Protein Domain
IPR046250
Name: Protein of unknown function DUF6283
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001735) is described by MIBiG as an example of the following biosynthetic class, other (unspecified), in particular the pentostatine biosynthetic gene cluster from Streptomyces antibioticus [ ]. This family appears to be predominantly found in bacteria.
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Protein Domain
IPR022280
Name: ParB-related, ThiF-related cassette, protein B
Type: Family
Description: This entry contains a novel genetic system characterised by six major proteins, including a ParB homologue and a ThiF homologue. It is designated PRTRC, or ParB-Related, ThiF-Related Cassette. This protein family is designated protein B.
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Protein Domain
IPR022283
Name: ParB-related, ThiF-related cassette, protein F
Type: Family
Description: This entry contains a novel genetic system characterised by seven (usually) major proteins including a ParB homologue and a ThiF homologue. It is commonly found on plasmids or in bacterial chromosomal regions near phage, plasmid or transposon markers. It is most common among the beta Proteobacteria. It has been named the system PRTRC, or ParB-Related, ThiF-Related Cassette. This family is designated protein F, and it is the most divergent of the families.
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Protein Domain
IPR022289
Name: ParB-related, ThiF-related cassette, protein C
Type: Domain
Description: This entry represents a novel genetic system which is characterised by six major proteins, one of which is a ParB and ThiF homologue designated PRTRC (ParB-Related,ThiF-Related Cassette). This PRTRC system c protein is often found on plasmids.
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Protein Domain
IPR046248
Name: Protein of unknown function DUF6281
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide, in particular the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus [ ].
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Protein Domain
IPR046247
Name: Protein of unknown function DUF6280
Type: Family
Description: This family of proteins is functionally uncharacterised and found in Alphaproteobacteria.
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Protein Domain
IPR046245
Name: Protein of unknown function DUF6278
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001590) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the formicamycins A-M biosynthetic gene cluster from Streptomyces sp. KY5 [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046244
Name: Protein of unknown function DUF6277
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001096) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the FR901464 biosynthetic gene cluster from Pseudomonas sp. 2663 [ ].
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Protein Domain
IPR046243
Name: Protein of unknown function DUF6276
Type: Family
Description: This family of proteins found in archaea is functionally uncharacterised. Proteins in this family contain an N-terminal zinc binding domain.
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Protein Domain
IPR046242
Name: Protein of unknown function DUF6275
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in Firmicute bacteria and their phage.
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Protein Domain
IPR046241
Name: Protein of unknown function DUF6274
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000119) is described by MIBiG as an example of the following biosynthetic classes, polyketide and saccharide, in particular the 7-deoxypactamycin biosynthetic gene cluster from Streptomyces pactum [ , , ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046299
Name: Protein of unknown function DUF6336
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001593) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide), in particular the ficellomycin biosynthetic gene cluster from Streptomyces ficellus [ ].
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Protein Domain
IPR046298
Name: Protein of unknown function DUF6335
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001615) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide), in particular hexose-palythine-serine biosynthetic gene cluster from Heteroscytonema crispum UCFS10 [ ].
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Protein Domain
IPR046297
Name: Protein of unknown function DUF6334
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001543) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the chejuenolide A biosynthetic gene cluster from Hahella chejuensis [ ].
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Protein Domain
IPR046295
Name: Protein of unknown function DUF6332
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001598) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the foxicins A-D biosynthetic gene cluster from Streptomyces diastatochromogenes [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046294
Name: Protein of unknown function DUF6331
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001060) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the dynemicin A biosynthetic gene cluster from Micromonospora chersina [].
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Protein Domain
IPR046293
Name: Protein of unknown function DUF6330
Type: Family
Description: This family of bacterial proteins is functionally uncharacterised. Proteins in this family are approximately 70 amino acids in length.
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Protein Domain
IPR046291
Name: Protein of unknown function DUF6328
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000219) is described by MIBiG as an example of the following biosynthetic classes, polyketide and saccharide, in particular the elloramycin biosynthetic gene cluster from Streptomyces olivaceus [ ]. This family appears to be predominantly found in Actinobacteria.
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Protein Domain
IPR046290
Name: Protein of unknown function DUF6327
Type: Family
Description: This family of proteins is functionally uncharacterised and found in bacteria. Proteins in this family have two conserved sequence motifs: KKY and YQK.
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Protein Domain
IPR046289
Name: Protein of unknown function DUF6326
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria and archaea.
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Protein Domain
IPR046288
Name: Protein of unknown function DUF6325
Type: Family
Description: This family of proteins is functionally uncharacterised and is predominantly found in bacteria.
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Protein Domain
IPR046287
Name: Protein of unknown function DUF6324
Type: Family
Description: This family of proteins is functionally uncharacterised and is found in bacteria. Proteins in this family have two conserved sequence motifs: QIGPT and GMVR.
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Protein Domain
IPR046286
Name: Protein of unknown function DUF6323
Type: Family
Description: This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001520) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the aurantinin B biosynthetic gene cluster from Bacillus subtilis [ ]. This family appears to be predominantly present in Firmicutes.
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