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Search results 6401 to 6500 out of 30763 for seed protein

Category restricted to ProteinDomain (x)

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Categories

Category: ProteinDomain
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Type Details Score
Protein Domain
IPR046487
Name: Protein of unknown function DUF6580
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria and archaea. Proteins in this family are approximately 200 amino acids in length. Some members are hypothetical ECF transporters related to the Gx transporter superfamily.
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Protein Domain
IPR046486
Name: Protein of unknown function DUF6579
Type: Family
Description: This entry represents a family of proteins that is functionally uncharacterised. This family of proteins is found in Fungi. Proteins in this family are approximately 300 amino acids in length. There are some conserved motifs, HxFF, HPD and FHLLI.
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Protein Domain
IPR046485
Name: Protein of unknown function DUF6578
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is mainly found in Actinobacteria. Proteins in this family are typically between 132 and 185 amino acids in length. There are three conserved motifs, WQ, CCG and GxV.
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Protein Domain
IPR046484
Name: Protein of unknown function DUF6577
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria, mainly Bacteroidetes and Firmicutes. Proteins in this family are typically between 239 and 255 amino acids in length. There are some conserved sequences, GxY, EKxxVD and YAxxRR and a conserved His.
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Protein Domain
IPR046481
Name: Protein of unknown function DUF6574
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria, mainly Firmicutes. Proteins in this family are typically between 116 and 320 amino acids in length. Many members are thought to contain a zinc ribbon domain.
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Protein Domain
IPR046480
Name: Protein of unknown function DUF6573
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria and archaea. Proteins in this family are approximately 130 amino acids in length.
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Protein Domain
IPR009503
Name: Protein of unknown function DUF1125
Type: Family
Description: This family consists of several short proteins from Lactococcus species and bacteriophages. The function of this family is unknown.
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Protein Domain
IPR009506
Name: Protein of unknown function DUF1127
Type: Family
Description: This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
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Protein Domain
IPR009507
Name: Protein of unknown function UPF0435
Type: Family
Description: This family consists of several short, hypothetical bacterial proteins of unknown function.
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Protein Domain
IPR009509
Name: Protein of unknown function DUF1132
Type: Family
Description: This family consists of several hypothetical proteins from Neisseria species. The function of this family is unknown.
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Protein Domain
IPR009776
Name: Sporulation stage 0, protein M
Type: Family
Description: This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [ ].
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Protein Domain
IPR010764
Name: Protein of unknown function DUF1347
Type: Family
Description: This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
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Protein Domain
IPR046719
Name: Protein of unknown function DUF6611
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in actinobacteria. Proteins in this family are typically between 165 and 185 amino acids in length.
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Protein Domain
IPR046718
Name: Protein of unknown function DUF6610
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in archaea, bacteria and viruses. Proteins in this family are typically between 304 and 335 amino acids in length.
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Protein Domain
IPR046717
Name: Protein of unknown function DUF6609
Type: Family
Description: This family of integral membrane proteins is functionally uncharacterised. This family of proteins is found mainly in firmicutes and actinobacteria. Proteins in this family are approximately 180 amino acids in length.
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Protein Domain
IPR046716
Name: Protein of unknown function DUF6608
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length.
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Protein Domain
IPR046715
Name: Protein of unknown function DUF6607
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is predominantly found in bacteroidetes and proteobacteria. Proteins in this family are typically between 300 and 331 amino acids in length.
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Protein Domain
IPR046713
Name: Protein of unknown function DUF6786
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 397 and 433 amino acids in length.
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Protein Domain
IPR046710
Name: Protein of unknown function DUF6783
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 97 amino acids in length.
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Protein Domain
IPR010778
Name: Protein of unknown function DUF1368
Type: Family
Description: This family consists of several proteins with seem to be specific to red algae plasmids. Members of this family are typically around 415 residues in length. The function of this family is unknown.
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Protein Domain
IPR010779
Name: Protein of unknown function DUF1372
Type: Family
Description: This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.
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Protein Domain
IPR046708
Name: Protein of unknown function DUF6781
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are typically between 223 and 298 amino acids in length.
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Protein Domain
IPR009780
Name: Protein of unknown function DUF1344
Type: Family
Description: This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in rhizobacteria. The function of this family is unknown.
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Protein Domain
IPR009781
Name: Protein of unknown function DUF1345
Type: Family
Description: This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
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Protein Domain
IPR046705
Name: Protein of unknown function DUF6778
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria, predominantly in rhodobacteria. Proteins in this family are typically between 203 and 225 amino acids in length. This family contains the conserved sequence motifs DIVW, RFH and GGxH.
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Protein Domain
IPR009783
Name: Protein of unknown function DUF1348
Type: Family
Description: This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.
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Protein Domain
IPR046703
Name: Protein of unknown function DUF6776
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in proteobacteria. Proteins in this family are typically between 234 and 251 amino acids in length.
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Protein Domain
IPR046702
Name: Protein of unknown function DUF6572
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are typically between 107 and 214 amino acids in length. These proteins may have a threefold symmetricβ-trefoil fold, a symmetric protein structure thought to be conserved in protein evolution [ ].
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Protein Domain
IPR046701
Name: Protein of unknown function DUF6571
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in Actinobacteria. Proteins in this family are typically between 547 and 730 amino acids in length.
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Protein Domain
IPR019109
Name: Protein of unknown function DUF4870
Type: Family
Description: This entry represents a large group of uncharacterised conserved proteins. Their function is not clear.
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Protein Domain
IPR010772
Name: Protein of unknown function DUF1359
Type: Family
Description: This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
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Protein Domain
IPR010741
Name: Protein of unknown function DUF1314
Type: Family
Description: This family consists of several alphaherpesvirus proteins of around 200 residues in length. Their function is unknown [ ].
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Protein Domain
IPR009750
Name: Protein of unknown function DUF1317
Type: Family
Description: This family consists of several hypothetical bacterial and phage proteins. The function of this family is unknown.
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Protein Domain
IPR009753
Name: Protein of unknown function DUF1322
Type: Family
Description: This entry represents a family of hypothetical Borrelia proteins of around 78 residues in length. The function of this family is unknown.
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Protein Domain
IPR010752
Name: Protein of unknown function DUF1329
Type: Family
Description: This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica.
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Protein Domain
IPR022721
Name: Protein of unknown function DUF3561
Type: Family
Description: This entry represents Inner membrane protein YgbE from Escherichia coli (strain K12) and other proteins predominantly found in Proteobacteria. This family of proteins is functionally uncharacterised. Members of this group of proteins are about 110 amino acids in length.
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Protein Domain
IPR022720
Name: Gliding motility-associated protein GldM, N-terminal
Type: Domain
Description: This domain is found in bacteria at the N terminus of the gliding motility-associated protein, GldM. This domain is typically between 169 to 182 amino acids in length. This domain has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Flavobacterium johnsoniae UW101 Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [ ].
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Protein Domain
IPR010751
Name: Plasmid replication initiator protein TrfA
Type: Family
Description: This family consists of several bacterial TrfA proteins. The trfA operon of broad-host-range IncP plasmids is essential to activate the origin of vegetative replication in diverse species. The trfA operon encodes two ORFs. The first ORF is highly conserved and encodes a putative single-stranded DNA binding protein (Ssb). The second, trfA, contains two translational starts as in the IncP alpha plasmids, generating related polypeptides of 406 (TrfA1) and 282 (TrfA2) amino acids. TrfA2 is very similar to the IncP alpha product, whereas the N-terminal region of TrfA1 shows very little similarity to the equivalent region of IncP alpha TrfA1. This region has been implicated in the ability of IncP alpha plasmids to replicate efficiently in Pseudomonas aeruginosa [ ].
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Protein Domain
IPR007154
Name: Protein of unknown function DUF356
Type: Family
Description: Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
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Protein Domain
IPR007152
Name: Protein of unknown function DUF354
Type: Family
Description: Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
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Protein Domain
IPR020132
Name: Mycobacteriophage tail assembly protein 24/25
Type: Family
Description: This entry includes the tail assembly protein Gp24 and Gp25. In some strains Gp24 is the N-terminal domain of a fusion protein with the following ORF, Gp25. In Mycobacteriophages these proteins are likely to interact with the tape measure protein [ , ].
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Protein Domain
IPR020139
Name: Protein of unknown function DUF2642
Type: Family
Description: This entry contains proteins with no known function.
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Protein Domain
IPR019139
Name: Leucine-rich repeat flightless-interacting protein 1/2
Type: Family
Description: Leucine-rich repeat flightless-interacting protein 1 (LRRFIP1) is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [ ]. It may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. It interacts with the leucine-rich repeat domain of human flightless-I (FliI) protein [].Leucine-rich repeat flightless-interacting protein 2 (LRRFIP2) may function as activator of the canonical Wnt signaling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [ ]. It positively regulates Toll-like receptor (TLR) signalling in response to agonist probably by competing with the negative FLII regulator for MYD88-binding [].
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Protein Domain
IPR007163
Name: Protein of unknown function DUF368
Type: Family
Description: This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
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Protein Domain
IPR007162
Name: Protein of unknown function DUF366
Type: Family
Description: This is an archaeal family of unknown function.
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Protein Domain
IPR022782
Name: Actin interacting protein 3-like, C-terminal
Type: Domain
Description: This entry represents the C-terminal domain of actin interacting protein 3 (also known as Bud6 in budding yeasts). Bud6 is an actin- and formin-interacting protein. The N-terminal half of Bud6 is a microtubule binding domain required for its localisation and for its function in cortical capture of astral microtubule ends. The C-terminal half (residues 489-788) directly facilitates actin filament assembly by the formin Bni1 and is required for NPF (nucleation-promoting factor) activity. The domain represented in this entry (residues 365-776) is overlapped with the C-terminal half of Bud6 in this study [ ]. This entry also includes proteins from animals.
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Protein Domain
IPR005613
Name: Actin interacting protein 3, C-terminal
Type: Domain
Description: This entry represents the C-terminal domain of actin interacting protein 3 (also known as Bud6 in budding yeasts). Bud6 is an actin- and formin-interacting protein. The N-terminal half of Bud6 is a microtubule binding domain required for its localisation and for its function in cortical capture of astral microtubule ends. The C-terminal half (residues 489-788) directly facilitates actin filament assembly by the formin Bni1 and is required for NPF (nucleation-promoting factor) activity. The domain represented in this entry (residues 365-776) is overlapped with the C-terminal half of Bud6 in this study [ ].
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Protein Domain
IPR046745
Name: Protein of unknown function DUF6675
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria, mainly in spirochaetes. Proteins in this family are typically between 242 and 267 amino acids in length.
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Protein Domain
IPR007169
Name: Extracellular matrix regulatory protein A-like
Type: Family
Description: This family of mostly uncharacterized proteins includes the extracellular matrix regulatory protein A (RemA) from Bacillus subtilis. RemA is required for biosynthesis of the extracellular matrix and biofilm formation [ , ]. It binds to DNA at multiple sites upstream of the promoters of the operons eps and tapA-sipW-tasA, which are required for the synthesis of the extracellular matrix components, extracellular polysaccharide and TasA amyloid proteins. SinR negatively regulates eps operon expression by occluding RemA binding []. Structure of RemA homologue from Geobacillus thermodenitrificans revealed that it forms an unique octameric ring with the potential to form a 16-meric superstructure and suggests that RemA can wrap DNA around its ring-like structure [].
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Protein Domain
IPR020123
Name: Protein of unknown function DUF5475
Type: Family
Description: This is a family of unknown function found in Alphabaculovirus.
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Protein Domain
IPR046743
Name: Protein of unknown function DUF6793
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Proteins in this family might have an RNA polymerase activity.
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Protein Domain
IPR020125
Name: Protein of unknown function DUF5488
Type: Family
Description: This is a family of unknown function found in Orthopoxvirus.
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Protein Domain
IPR020126
Name: Protein of unknown function DUF2732
Type: Family
Description: This entry represents a group of proteins with no known function
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Protein Domain
IPR046741
Name: Protein of unknown function DUF6791
Type: Domain
Description: This presumed domain is functionally uncharacterised. This domain family is found in bacteria, and is approximately 160 amino acids in length. The domain is found in sequences that belong to the Thif family and is in association with , located at its N-terminal.
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Protein Domain
IPR046740
Name: Protein of unknown function DUF6790
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 159 and 176 amino acids in length.
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Protein Domain
IPR007171
Name: Protein of unknown function DUF371
Type: Family
Description: This is an archaeal family of unknown function.
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Protein Domain
IPR007170
Name: Stage V sporulation protein G
Type: Family
Description: This entry represents the stage V sporulation protein G (SpoVG). It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis [ ]. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].
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Protein Domain
IPR010787
Name: Protein of unknown function DUF1385
Type: Family
Description: This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
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Protein Domain
IPR007132
Name: Protein of unknown function DUF346
Type: Repeat
Description: This repeat is found as seven tandem copies in carbohydrate-binding proteins, including Fucose-binding Lectin from Photorhabdus laumondii ( )and similar fungal and bacterial proteins. It is composed of β-strands and forms a seven-bladed β-propeller structure [ , ]. It is found in association with BNR repeats, which also form a β-propeller.
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Protein Domain
IPR009791
Name: Protein of unknown function DUF1357
Type: Family
Description: This entry represents a family of hypothetical proteins of around 225 residues in length found in Borrelia species. The function of this family is unknown.
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Protein Domain
IPR046739
Name: Protein of unknown function DUF6789
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria and archaea. These are likely membrane proteins.
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Protein Domain
IPR046738
Name: Protein of unknown function DUF6788
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is mainly found in bacteria and archaea. Proteins in this family are around 100 amino acids in length. There are two conserved sequence motifs, CGxxxCxC containing three conserved Cys residues and HGP.
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Protein Domain
IPR009793
Name: Protein of unknown function DUF1361
Type: Family
Description: This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
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Protein Domain
IPR046737
Name: Protein of unknown function DUF6629
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are typically between 212 and 228 amino acids in length.
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Protein Domain
IPR007139
Name: Protein of unknown function DUF349
Type: Repeat
Description: This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three α-helices, and possibly a β-strand.
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Protein Domain
IPR046736
Name: Protein of unknown function DUF6628
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in proteobacteria. Proteins in this family are approximately 140 amino acids in length.
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Protein Domain
IPR009795
Name: Protein of unknown function DUF1363
Type: Family
Description: This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
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Protein Domain
IPR009796
Name: Protein of unknown function DUF1366
Type: Family
Description: This family consists of several hypothetical Streptococcus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 ( ) is known as Gp149. The function of this family is unknown.
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Protein Domain
IPR046734
Name: Protein of unknown function DUF6626
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length.
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Protein Domain
IPR007136
Name: Protein of unknown function DUF347
Type: Repeat
Description: This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
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Protein Domain
IPR009797
Name: Protein of unknown function DUF1367
Type: Family
Description: This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
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Protein Domain
IPR020112
Name: Protein of unknown function DUF2883
Type: Family
Description: This group of proteins currently have no known function and are found primarily in the T4-like bacteriophages.
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Protein Domain
IPR046733
Name: Protein of unknown function DUF6625
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 292 and 338 amino acids in length.
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Protein Domain
IPR020113
Name: Protein of unknown function DUF5439
Type: Family
Description: This is a family of unknown function found in Orthopoxvirus.
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Protein Domain
IPR046732
Name: Protein of unknown function DUF6624
Type: Family
Description: This presumed domain is functionally uncharacterised. This domain is found in bacteria. Proteins in this family are typically between 188 and 316 amino acids in length.
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Protein Domain
IPR046731
Name: Protein of unknown function DUF6623
Type: Family
Description: This presumed domain is functionally uncharacterised, found in proteins from bacteria and eukaryotes.
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Protein Domain
IPR046730
Name: Protein of unknown function DUF6622
Type: Family
Description: This family of proteins is functionally uncharacterised, found in bacteria. Proteins in this family are approximately 170 amino acids in length.
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Protein Domain
IPR010780
Name: Protein of unknown function DUF1375
Type: Family
Description: This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the class Gammaproteobacteria. The function of this family is unknown.
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Protein Domain
IPR010781
Name: Protein of unknown function DUF1376
Type: Family
Description: This entry includes Bacteriophage PBC5 (Sinorhizobium phage PBC5), Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.
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Protein Domain
IPR007140
Name: Protein of unknown function DUF350
Type: Repeat
Description: This motif occurs in a small set of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.
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Protein Domain
IPR046729
Name: Protein of unknown function DUF6621
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 200 amino acids in length.
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Protein Domain
IPR046728
Name: Protein of unknown function DUF6620
Type: Family
Description: This presumed domain is functionally uncharacterised. It is found in bacteria, mainly in bacteroidetes.
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Protein Domain
IPR046726
Name: Protein of unknown function DUF6618
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in firmicutes. Proteins in this family are typically between 98 and 116 amino acids in length.
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Protein Domain
IPR046725
Name: Protein of unknown function DUF6617
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteroidetes. Proteins in this family are typically between 315 and 341 amino acids in length.
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Protein Domain
IPR046724
Name: Protein of unknown function DUF6616
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
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Protein Domain
IPR046723
Name: Protein of unknown function DUF6615
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are typically between 301 and 317 amino acids in length. These proteins contain a conserved sequence motif FREE that may be functionally important.
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Protein Domain
IPR046722
Name: Protein of unknown function DUF6614
Type: Family
Description: This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
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Protein Domain
IPR046721
Name: Protein of unknown function DUF6613
Type: Family
Description: This family of proteins is functionally uncharacterised. However, the contain an N-terminal methylation site suggesting these may be pilin proteins. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 237 amino acids in length.
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Protein Domain
IPR046720
Name: Protein of unknown function DUF6612
Type: Family
Description: This family of proteins is functionally uncharacterised. However, based on similarity to other families it is likely to be involved in lipoprotein biosynthesis. This family of proteins is found in bacteria. Proteins in this family are typically between 263 and 293 amino acids in length.
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Protein Domain
IPR020104
Name: Protein of unknown function DUF5438
Type: Family
Description: This is a family of unknown function found in Orthopoxvirus.
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Protein Domain
IPR010792
Name: Protein of unknown function DUF1389
Type: Family
Description: This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydiia. Members of this family are typically around 400 residues in length. The function of this family is unknown.
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Protein Domain
IPR032150
Name: Protein of unknown function DUF4820
Type: Family
Description: This family of proteins is functionally uncharacterised. Proteins in this family are typically between 320 and 483 amino acids in length. There are two conserved sequence motifs: WSLP and RPLPW.
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Protein Domain
IPR046796
Name: Putative plant transposon protein domain
Type: Domain
Description: This entry represents a domain found in likely transposon related proteins from plants. This entry appears related to ORF1 from the ATHILA group of Arabidopsis thaliana retrotransposons .
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Protein Domain
IPR046795
Name: Transmembrane protein 127, transmembrane region
Type: Domain
Description: Transmembrane protein 127 (TMEM127) modulates mTOR function in the endolysosome. Its interaction with early endosomal GTPase Rab5 to inhibit mTOR signalling seems to be related with its tumour-suppressing properties [ , ]. This entry represents the transmembrane region of this protein and similar animal sequences.
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Protein Domain
IPR032145
Name: Protein of unknown function DUF4818
Type: Family
Description: This family of proteins is functionally uncharacterised. Proteins in this family are typically between 176 and 214 amino acids in length. There is a single completely conserved residue W that may be functionally important.
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Protein Domain
IPR039145
Name: 39S ribosomal protein L40, mitochondrial
Type: Family
Description: L40 is a component of the mitochondrial large ribosomal subunit (39S), it binds to the major groove of the anticodon stem of mt-tRNA(Val) in the central protuberance [ , ].
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Protein Domain
IPR020169
Name: Intrinsic membrane protein family, PufX
Type: Family
Description: PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides [ ]. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].
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Protein Domain
IPR032134
Name: Protein of unknown function DUF4816
Type: Family
Description: This family of proteins is functionally uncharacterised. Proteins in this family are typically between 178 and 456 amino acids in length. There is a conserved WKP sequence motif.
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Protein Domain
IPR007176
Name: Protein of unknown function DUF365
Type: Family
Description: This is an archaeal family of unknown function.
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Protein Domain
IPR020151
Name: Protein of unknown function DUF5478
Type: Family
Description: This is a family of unknown function found in Alphabaculovirus.
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