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Search results 6901 to 7000 out of 30763 for seed protein

Category restricted to ProteinDomain (x)

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Categories

Category: ProteinDomain
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Type Details Score
Protein Domain
IPR019289
Name: Bacteriophage tail protein Gp41, putative
Type: Family
Description: This set of bacteriophage proteins have no known function, though it has been suggested that they may function as tail proteins [ ].
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Protein Domain
IPR032249
Name: Protein of unknown function DUF4824
Type: Family
Description: This family consists of several hypothetical lipoproteins around 270 residues in length and is mainly found in Pseudomonas species. The function of this family is unknown.
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Protein Domain
IPR032248
Name: Protein of unknown function DUF4823
Type: Family
Description: This family consists of hypothetical lipoproteins around 210 residues of length and is mainly found in various Pseudomonas species. The function of this family is unknown.
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Protein Domain
IPR044297
Name: Protein CELLULOSE SYNTHASE INTERACTIVE 1/2/3
Type: Family
Description: This entry represents a group of plant cellulose synthase interacting proteins, including CSI1/2/3 from Arabidopsis. They are non-cellulose synthase (CESA) proteins associated with cellulose synthase complexes [ ] and are required for cellulose biosynthesis []. CSI1 is also a microtubule-associated protein that bridges CESA complexes and cortical microtubules []. CSI3 has been shown to regulate plant cellulose biosynthesis and plant anisotropic cell growth that modulates the velocity of cellulose synthase complexes in both a microtubule-dependent and microtubule-independent manner [].
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Protein Domain
IPR032299
Name: Protein of unknown function DUF4843
Type: Family
Description: This family consists of uncharacterised proteins around 220 residues in length and is mainly found in various Bacteroides species. Distant homology analysis suggest distant relation between this family and other families of proteins with immunoglobulin-like folds, which are often involved in substrate binding. However, specific function of this family is unknown.
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Protein Domain
IPR032293
Name: Protein of unknown function DUF4840
Type: Family
Description: This family consists of uncharacterised proteins around 220 residues in length and is mainly found in various Prevotella and Bacteroides species. The function of this family is unknown.
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Protein Domain
IPR032290
Name: Protein of unknown function DUF4839
Type: Family
Description: This family consists of uncharacterised proteins around 300 residues in length. The function of this family is unknown.
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Protein Domain
IPR032287
Name: Protein of unknown function DUF4838
Type: Family
Description: This family consists of several uncharacterised proteins found mainly in various Bacteroides species. The function of this family is unknown.
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Protein Domain
IPR032286
Name: Protein of unknown function DUF4837
Type: Family
Description: This family consists of uncharacterised proteins around 350 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.
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Protein Domain
IPR010923
Name: tRNA threonylcarbamoyladenosine biosynthesis protein SUA5
Type: Family
Description: The yeast SUA5 protein is part of the YrdC/SUA5 family is required for the formation of threonylcarbamoyladenosine in tRNA [ ]. SUA5 has been shown to be required for translational regulation [] and telomere recombination [] and replication [] in yeast.Members of this group contain two domains: a YrdC-like domain and the C-terminal SUA5-like domain. The YrdC-like domain has been implicated in RNA-binding, which correlates with its proposed role as a translation factor [ ]. There is a prediction for the RNA-binding site in the depression on the surface of the protein based on the structural features []. The C-terminal SUA5-type domain has been shown to be essential for the regulatory function of SUA5 protein [].
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Protein Domain
IPR009935
Name: Protein of unknown function DUF1467
Type: Family
Description: This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
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Protein Domain
IPR009936
Name: Protein of unknown function DUF1468
Type: Family
Description: This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
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Protein Domain
IPR022916
Name: Protein of unknown function UPF0349
Type: Family
Description: The proteins in this entry are functionally uncharacterised.
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Protein Domain
IPR009910
Name: Protein of unknown function DUF1450
Type: Family
Description: This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
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Protein Domain
IPR009941
Name: Protein of unknown function DUF1473
Type: Family
Description: This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
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Protein Domain
IPR009942
Name: Protein of unknown function DUF1474
Type: Family
Description: This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus species. The function of this family is unknown.
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Protein Domain
IPR010938
Name: Protein of unknown function DUF1131
Type: Family
Description: This entry consists of several hypothetical bacterial proteins of unknown function.
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Protein Domain
IPR003795
Name: Protein of unknown function DUF192
Type: Family
Description: This entry describes proteins of unknown function.
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Protein Domain
IPR022909
Name: 50S ribosomal protein L10, archaea
Type: Family
Description: 50S ribosomal protein L10 forms the large subunit's ribosomal stalk, playing a central role in the interaction of the ribosome with elongation factors [ ].
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Protein Domain
IPR020880
Name: Protein of unknown function UPF0741
Type: Family
Description: This entry contains bacterial proteins with no known function.
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Protein Domain
IPR009918
Name: Protein of unknown function DUF1454
Type: Family
Description: This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
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Protein Domain
IPR009919
Name: Protein of unknown function DUF1455
Type: Family
Description: This family consists of several hypothetical putative outer membrane proteins which appear to be specific to Anaplasma marginale and Anaplasma ovis.
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Protein Domain
IPR009922
Name: Protein of unknown function DUF1457
Type: Family
Description: This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
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Protein Domain
IPR009924
Name: Protein of unknown function DUF1459
Type: Family
Description: This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
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Protein Domain
IPR009925
Name: Protein of unknown function DUF1463
Type: Family
Description: This entry represents a family of hypothetical proteins of around 140 residues in length found in Borrelia species. The function of this family is unknown.
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Protein Domain
IPR009927
Name: Protein of unknown function DUF1464
Type: Family
Description: This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
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Protein Domain
IPR009971
Name: Protein of unknown function DUF1496
Type: Family
Description: This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
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Protein Domain
IPR009972
Name: Protein of unknown function DUF1497
Type: Family
Description: This entry represents a family of several short phage and bacterial proteins whose function is not known. This family seems to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism.
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Protein Domain
IPR009981
Name: Protein of unknown function DUF1505
Type: Family
Description: This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
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Protein Domain
IPR019300
Name: CO dehydrogenase accessory protein CooT
Type: Family
Description: CooT is an accessory protein required for maturation of Carbon Monoxide Dehydrogenase (CODH). It is a member of a Ni(ii)-binding protein family, linked to anaerobic metabolism in bacteria and archaea, and in most cases to the presence of CODH. Structure analysis indicates that it is a homodimer featuring a fold that resembles an Sm-like domain [ ].
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Protein Domain
IPR009954
Name: Protein of unknown function DUF1482
Type: Family
Description: This family consists of several Enterobacterial proteins of around 60 residues in length. The function of this family is unknown.
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Protein Domain
IPR009957
Name: Protein of unknown function DUF1484
Type: Family
Description: This family consists of several hypothetical bacterial proteins of around 110 residues in length. Members of this family appear to be found exclusively in Ralstonia solanacearum. The function of this family is unknown.
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Protein Domain
IPR009950
Name: Protein of unknown function DUF1480
Type: Family
Description: This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
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Protein Domain
IPR022930
Name: Protein of unknown function UPF0316
Type: Family
Description: The proteins in this entry are functionally uncharacterised.
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Protein Domain
IPR009963
Name: Protein of unknown function DUF1490
Type: Family
Description: DUF1490 consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.
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Protein Domain
IPR009964
Name: Protein of unknown function DUF1491
Type: Family
Description: This family consists of several bacterial proteins of around 115 residues in length. Members of this family seem to be found exclusively in the alphaproteobacteria. The function of this family is unknown.
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Protein Domain
IPR009968
Name: Protein of unknown function DUF1494
Type: Family
Description: This family consists of several bacterial proteins of around 175 residues in length. Members of this family seem to be found exclusively in Chlamydia species. The function of this family is unknown.
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Protein Domain
IPR007307
Name: Low temperature viability protein Ltv1
Type: Family
Description: The low-temperature viability protein Ltv1 is required for 40S subunit biogenesis in yeast [ ]. It may facilitate the incorporation of Rps3, Rps10, and Asc1/RACK1 into the small ribosomal subunit head [].
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Protein Domain
IPR009961
Name: Protein of unknown function DUF1487
Type: Family
Description: This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
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Protein Domain
IPR009962
Name: Protein of unknown function DUF1488
Type: Family
Description: This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.
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Protein Domain
IPR022920
Name: Disulphide bond formation protein DsbB
Type: Family
Description: Disulphide bonds contribute to folding, maturation, stability, and regulation of proteins, in particular those localized out of the cytosol. Oxidation of selected pairs of cysteines to disulphide in vivo requires cellular factors present in the bacterial periplasmic space or in the endoplasmic reticulum of eukaryotic cells [ , ].The disulfide bond formation protein B (DsbB) is a component of the pathway that leads to disulphide bond formation in periplasmic proteins of Escherichia coli and other bacteria. The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulphide bonds [ ]. DsbB acts as a redox potential transducer across the cytoplasmic membrane. It is a membrane protein which spans the membrane four times with both the N- and C-termini of the protein are in the cytoplasm. Each of the periplasmic domains of the protein has two essential cysteines. The two cysteines in the first periplasmic domain are in a Cys-X-Y-Cys configuration that is characteristic of the active site of other proteins involved in disulphide bond formation, including DsbA and protein disulphide isomerase [].
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Protein Domain
IPR007596
Name: Viral A-type inclusion protein repeat
Type: Repeat
Description: The repeat is found in the A-type inclusion protein of the Poxvirus family [ ].
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Protein Domain
IPR032559
Name: Protein of unknown function DUF4933
Type: Family
Description: This family consists of uncharacterised proteins around 450 residues in length and is mainly found in Bacteroides species. Their function is unknown.
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Protein Domain
IPR032556
Name: Protein of unknown function DUF4936
Type: Family
Description: This family consists of uncharacterised proteins around 100 residues in length and is mainly found in Betaproteobacteria. The function of this family is unknown.
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Protein Domain
IPR032554
Name: Protein of unknown function DUF4938
Type: Family
Description: A small family consists of several uncharacterised proteins around 300 residues in length and is mainly found in Chloroflexia. The function of this family is unknown.
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Protein Domain
IPR032542
Name: Protein of unknown function DUF4947
Type: Family
Description: This small family consists of uncharacterised proteins around 220 residues in length and is mainly found in various Streptococcus species. The function of this family is unknown.
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Protein Domain
IPR032541
Name: Protein of unknown function DUF4948
Type: Family
Description: This small family consists of uncharacterised proteins around 200 residues in length and is mainly found in various Bacteroides, Paraprevotella, Parabacteroides and Alistipes species. The function of this family is unknown.
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Protein Domain
IPR032540
Name: Protein of unknown function DUF4949
Type: Family
Description: This small family consists of uncharacterised proteins around 140 residues in length and is found mainly in Legionella neumophila and other Legionella species. The function of this family is unknown.
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Protein Domain
IPR044520
Name: ADP-ribosylation factor GTPase-activating protein AGD5/15
Type: Family
Description: This entry represents a group of plant ADP-ribosylation factor GTPase-activating proteins (ArfGAPs), such as AGD5/15 from Arabidopsis. ArfGAPs are a family of proteins containing an ArfGAP catalytic domain that induces the hydrolysis of GTP bound to the small guanine nucleotide-binding protein Arf, a member of the Ras superfamily of GTPases. AGD5 (also known as EVERSHED) is localised to the trans-Golgi network (TGN), where it co-localises with ARF1, a crucial GTPase that is involved in membrane trafficking [ ]. It facilitates the intracellular movement of molecules required for organ abscission and fruit growth [].
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Protein Domain
IPR032548
Name: Protein of unknown function DUF4940
Type: Family
Description: This family consists of several uncharacterised proteins around 250 residues in length and is mainly found in various Thermotoga species. The function of this family is unknown.
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Protein Domain
IPR032547
Name: Protein of unknown function DUF4941
Type: Family
Description: This family consists of several uncharacterised proteins around 300 residues in length and is mainly found in various Thermotoga species. The function of this family is unknown.
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Protein Domain
IPR032546
Name: Protein of unknown function DUF4943
Type: Family
Description: This small family consists of several uncharacterised proteins around 170 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.
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Protein Domain
IPR032545
Name: Protein of unknown function DUF4944
Type: Family
Description: This family consists of uncharacterised proteins around 160 residues in length and is mainly found in various Bacillus species, specially in Bacillus subtilis. The function of this family is unknown.
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Protein Domain
IPR032544
Name: Protein of unknown function DUF4945
Type: Family
Description: This small family consists of uncharacterised proteins around 140 residues in length and is mainly found in various Bacteroides species, specially in Bacteroides fragilis. The function of this family is unknown.
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Protein Domain
IPR032543
Name: Protein of unknown function DUF4946
Type: Family
Description: This small family consists of uncharacterised proteins around 180 residues in length and is mainly found in various Pseudomonas species. The function of this family is unknown.
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Protein Domain
IPR032531
Name: Protein of unknown function DUF4956
Type: Family
Description: This family consists of uncharacterised proteins around 220 residues in length. The function of this protein is unknown.
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Protein Domain
IPR044519
Name: ADP-ribosylation factor GTPase-activating protein AGD6/7
Type: Family
Description: This entry represents a group of plant ADP-ribosylation factor GTPase-activating proteins (ArfGAPs), such as AGD6/7 from Arabidopsis. ArfGAPs are a family of proteins containing an ArfGAP catalytic domain that induces the hydrolysis of GTP bound to the small guanine nucleotide-binding protein Arf, a member of the Ras superfamily of GTPases. AGD7 interacts with Arf1 and stimulates Arf1 GTPase activity in a phosphatidic acid-dependent manner. It is localised to the Golgi complex and may play a critical role in protein trafficking by controlling Arf1 activity [ ].
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Protein Domain
IPR044518
Name: ADP-ribosylation factor GTPase-activating protein AGD11/12/13
Type: Family
Description: This entry represents a group of plant ADP-ribosylation factor GTPase-activating proteins (ArfGAPs), such as AGD11/12/13 from Arabidopsis. ArfGAPs are a family of proteins containing an ArfGAP catalytic domain that induces the hydrolysis of GTP bound to the small guanine nucleotide-binding protein Arf, a member of the Ras superfamily of GTPases. Of all known members belonging to the ARF-GAP protein family only AGD11, 12, and 13 possess a C2 domain enabling them to bind phospholipids, phosphoinositide and proteins in a calcium-dependent manner [ ]. The C-terminal domain of AGD12 is structurally related to ENHANCED BENDING (EHB) 1, and both of them function as calcium-dependent proteins that affect gravitropism in Arabidopsis thaliana [ ].
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Protein Domain
IPR032539
Name: Protein of unknown function DUF4950
Type: Family
Description: This family consists of several uncharacterised proteins around 250 residues in length and is mainly found in various Enterococcus faecalis species. The function of this family is unknown.
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Protein Domain
IPR032538
Name: Protein of unknown function DUF4951
Type: Family
Description: This family consists of several uncharacterised proteins around 125 residues in length and is mainly found in various Acinetobacter baumannii species. The function of this family is unknown.
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Protein Domain
IPR032537
Name: Protein of unknown function DUF4952
Type: Family
Description: This family consists of several uncharacterised proteins around 150 residues in length and is mainly found in various Leptospira, Pseudomonas and Stenotrophomonas species. The function of this family is unknown.
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Protein Domain
IPR032533
Name: Protein of unknown function DUF4954
Type: Family
Description: This family consists of uncharacterised proteins around 660 residues in length and is mainly found in various Bacteroides, Prevotella and Treponema species. The function of this protein is unknown.
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Protein Domain
IPR007589
Name: Baculovirus major capsid protein VP39
Type: Family
Description: This family constitutes the 39kDa major capsid protein of the Baculoviridae [ ].
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Protein Domain
IPR032522
Name: Protein of unknown function DUF4961
Type: Family
Description: This small family consists of several uncharacterised proteins around 350 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.
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Protein Domain
IPR032597
Name: Protein of unknown function DUF4903
Type: Family
Description: This entry represents a family of uncharacterised proteins around 210 residues in length and found in Bacteroidetes. The function of this family is unknown.
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Protein Domain
IPR032595
Name: Protein of unknown function DUF4905
Type: Family
Description: This is a small family of uncharacterised proteins around 270 residues in length and found in bacteria. The function of this family is unknown.
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Protein Domain
IPR032594
Name: Protein of unknown function DUF4906
Type: Family
Description: This is a family of uncharacterised proteins around 300 residues in length and found in various Bacteroides, Parabacteroides and Alistipes species. The function of this family is unknown.
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Protein Domain
IPR032593
Name: Protein of unknown function DUF4907
Type: Family
Description: This is a family of uncharacterised proteins around 110 residues in length and found in bacteria. The function of this family is unknown.
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Protein Domain
IPR032591
Name: Protein of unknown function DUF4908
Type: Family
Description: This is a small family of uncharacterised proteins around 260 residues in length and found in Alphaproteobacteria. The function of this family is unknown.
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Protein Domain
IPR032590
Name: Protein of unknown function DUF4909
Type: Family
Description: Proteins in this family are approximately 160 amino acids in length. Several members are associated with vancomycin virulence in Staphylococcus aureus in some way [ ]. These proteins are all lipoproteins, carrying the characteristic prokaryotic membrane-attachment site at their N termini.
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Protein Domain
IPR032599
Name: Protein of unknown function DUF4901
Type: Family
Description: This family consists of uncharacterised proteins around 470 residues in length and is mainly found in Firmicutes. The function of this family is unknown.
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Protein Domain
IPR032585
Name: Protein of unknown function DUF4912
Type: Family
Description: This family consists of uncharacterised proteins around 160 residues in length and is mainly found in bacteria. The function of this family is unknown.
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Protein Domain
IPR032584
Name: Protein of unknown function DUF4913
Type: Family
Description: This family consists of uncharacterised proteins around 150 residues in length and is mainly found in Actinobacteria.
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Protein Domain
IPR032583
Name: Protein of unknown function DUF4914
Type: Family
Description: This family consists of uncharacterised proteins around 630 residues in length and is found in bacteria. The function of this family is unknown.
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Protein Domain
IPR032582
Name: Protein of unknown function DUF4916
Type: Family
Description: This family consists of uncharacterised proteins around 175 residues in length and is mainly found in Actinobacteria. The function of this family is unknown.
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Protein Domain
IPR032581
Name: Protein of unknown function DUF4917
Type: Family
Description: This family consists of uncharacterised proteins around 340 residues in length and is mainly found in Proteobacteria. The function of this family is unknown.
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Protein Domain
IPR032587
Name: Protein of unknown function DUF4911
Type: Family
Description: This family consists of uncharacterised proteins around 75 residues in length and is found in bacteria. The function of this family is unknown.
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Protein Domain
IPR032574
Name: Protein of unknown function DUF4924
Type: Family
Description: This family consists of uncharacterised proteins around 180 residues in length and is mainly found in Bacteroides, Prevotella and Porphyromonas species. The function of this family is unknown.
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Protein Domain
IPR032573
Name: Protein of unknown function DUF4925
Type: Family
Description: This family consists of uncharacterised proteins around 400 residues in length and is mainly found in various Bacteroides and Parabacteroides species. The function of this family is unknown.
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Protein Domain
IPR020592
Name: Ribosomal protein S16, conserved site
Type: Conserved_site
Description: Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [ , ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [ , ].Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Eubacterial S16.Algal and plant chloroplast S16.Cyanelle S16.Neurospora crassa mitochondrial S24 (cyt-21).S16 proteins have about 100 amino-acid residues. There are two paralogues in Arabidopsis thaliana, RPS16-1 (chloroplastic) and RPS16-2 (targeted to the chloroplast and the mitochondrion) [ ].This signature pattern covers a conserved region located in the N-terminal extremity of these proteins.
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Protein Domain
IPR019592
Name: Protein of unknown function DUF2469
Type: Family
Description: This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
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Protein Domain
IPR032578
Name: Protein of unknown function DUF4919
Type: Family
Description: This family consists of uncharacterised proteins around 230 residues in length and is mainly found in Bacteroidetes. The function of this family is unknown.
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Protein Domain
IPR032577
Name: Protein of unknown function DUF4920
Type: Family
Description: This family consists of uncharacterised proteins around 190 residues in length and is found in bacteria. The function of this family is unknown.
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Protein Domain
IPR032564
Name: Protein of unknown function DUF4928
Type: Family
Description: This family consists of uncharacterised proteins around 330 residues in length and is found in bacteria. The function of this family is unknown.
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Protein Domain
IPR032562
Name: Protein of unknown function DUF4929
Type: Family
Description: This family consists of uncharacterised proteins around 400 residues in length and is mainly found in Bacteroides and Prevotella species. The function of this family is unknown.
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Protein Domain
IPR032561
Name: Protein of unknown function DUF4930
Type: Family
Description: This is a family of uncharacterised proteins around 150 residues in length and found mainly in Staphylococcus. The function of this family is unknown.
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Protein Domain
IPR032560
Name: Protein of unknown function DUF4932
Type: Family
Description: This family consists of uncharacterised proteins around 460 residues in length and is found in bacteria and archaea. Their function is unknown.
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Protein Domain
IPR032568
Name: Protein of unknown function DUF4926
Type: Family
Description: This family consists of uncharacterised proteins around 70 residues in length and is mainly found in bacteria. The function of this family is unknown.
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Protein Domain
IPR030609
Name: Kelch-like protein 33, BACK domain
Type: Domain
Description: The KLHL (Kelch-like) proteins generally have a BTB/POZ domain, a BACK domain, and five to six Kelch motifs. They constitute a subgroup at the intersection between the BTB/POZ domain and Kelch domain superfamilies. The BTB/POZ domain facilitates protein binding [ ], while the Kelch domain (repeats) form β-propellers. The Kelch superfamily of proteins can be subdivided into five groups: (1) N-propeller, C-dimer proteins, (2) N-propeller proteins, (3) propeller proteins, (4) N-dimer, C-propeller proteins, and (5) C-propeller proteins. KLHL family members belong to the N-dimer, C-propeller subclass of Kelch repeat proteins []. In addition to BTB/POZ and Kelch domains, the KLHL family members contain a BACK domain, first described as a 130-residue region of conservation observed amongst BTB-Kelch proteins []. Many of the Kelch-like proteins have been identified as adaptors for the recruitment of substrates to Cul3-based E3 ubiquitin ligases [, ].This entry represents the BACK domain of Kelch-like protein 33 (KLHL33) [ ], whose function is not clear.
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Protein Domain
IPR017646
Name: DNA phosphorothioation-dependent restriction protein DptH
Type: Family
Description: A DNA sulfur modification (phosphorothioation) system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. This protein is one member of a three-gene restriction enzyme cassette that depends on DNA phosphorothioation [ ].
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Protein Domain
IPR017645
Name: DNA phosphorothioation-dependent restriction protein DptG
Type: Family
Description: A DNA sulfur modification (phosphorothioation) system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. This protein is one member of a three-gene restriction enzyme cassette that depends on DNA phosphorothioation [ ].
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Protein Domain
IPR017647
Name: DNA phosphorothioation-dependent restriction protein DptF
Type: Family
Description: A DNA sulfur modification (phosphorothioation) system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. This protein is one member of a three-gene restriction enzyme cassette that depends on DNA phosphorothioation [ ].
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Protein Domain
IPR017615
Name: Xanthine dehydrogenase, accessory protein PucB
Type: Family
Description: Members of this protein family are PucB proteins found in Bacillus subtilis [ ]. The expression of this protein is located in an operon with the structural subunits of xanthine dehydrogenase, and has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
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Protein Domain
IPR042637
Name: Ankyrin repeat domain-containing protein AN34A/B/C
Type: Family
Description: This entry includes AN34A/B/C from animals. Their function is not clear.
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Protein Domain
IPR042636
Name: Ankyrin repeat domain-containing protein 11
Type: Family
Description: Ankyrin repeat domain-containing protein 11 (ANKRD11) is a is a chromatin regulator that controls histone acetylation and gene expression during neural development [ ]. Mutations of the ANKRD11 gene cause KBG syndrome (KBGS), a rare genetic disorder characterised by intellectual disability, autism spectrum disorder, and craniofacial abnormalities [].
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Protein Domain
IPR003036
Name: Core shell protein Gag P30
Type: Domain
Description: Gag polyprotein plays a role in budding and is processed by the viral protease during virion maturation outside the cell [ ]. It can be cleaved into 4 chains: matrix protein p15, RNA-binding phosphoprotein p12, capsid protein p30 and nucleocapsid protein p10. This entry represents the capsid protein p30. Capsid protein p30 forms the spherical core of the virion that encapsulates the genomic RNA-nucleocapsid complex [ ].
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Protein Domain
IPR015017
Name: Protein of unknown function DUF1904
Type: Family
Description: This entry represents a family of hypothetical bacterial proteins.
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Protein Domain
IPR015018
Name: Protein of unknown function DUF1905
Type: Family
Description: This family consist of hypothetical bacterial proteins.
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Protein Domain
IPR017674
Name: Putative methanogenesis marker protein 11
Type: Family
Description: Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
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Protein Domain
IPR017676
Name: Putative methanogenesis marker protein 15
Type: Family
Description: Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family ( ), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
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