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Category: OntologyTerm
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Type Details Score
Ontology Term
Pfam:PF10262 | Rdx family
Description: This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [1]. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown [2]. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium [3].
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Ontology Term
PANTHER:PTHR31065 | PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR23074 | AAA DOMAIN-CONTAINING
 
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Ontology Term
PANTHER:PTHR23063 | PHOSPHOLIPID ACYLTRANSFERASE
 
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Ontology Term
PANTHER:PTHR23063:SF2 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4, ISOFORM D-RELATED
 
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Ontology Term
PANTHER:PTHR31280 | PROTEIN UNC-13 HOMOLOG
 
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Ontology Term
PANTHER:PTHR24077 | FAMILY NOT NAMED
 
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Ontology Term
Pfam:PF01556 | DnaJ C terminal domain
Description: This family consists of the C terminal region of the DnaJ protein. It is always found associated with Pfam:PF00226 and Pfam:PF00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. The two C-terminal domains CTDI and CTDII, both incorporated in this family are necessary for maintaining the J-domains in their specific relative positions [2]. Structural analysis of PDB:1nlt shows that PF00684 is nested within this DnaJ C-terminal region [3].
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Ontology Term
PANTHER:PTHR13253 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR13253:SF10 | THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 3
 
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Ontology Term
Pfam:PF00581 | Rhodanese-like domain
Description: Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.
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Ontology Term
Pfam:PF10294 | Lysine methyltransferase
Description: Methyltrans_16 is a lysine methyltransferase. Characterised members of this family are protein methyltransferases targetting Lys residues in specific proteins, including calmodulin, VCP, Kin17 and Hsp70 proteins [2,3,4,5].
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Ontology Term
PANTHER:PTHR24420:SF463 | DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN
 
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Ontology Term
PANTHER:PTHR30289 | UNCHARACTERIZED PROTEIN YBCL-RELATED
 
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Ontology Term
Pfam:PF01161 | Phosphatidylethanolamine-binding protein
Description: NULL
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Ontology Term
Pfam:PF02179 | BAG domain
Description: Domain present in Hsp70 regulators.
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Ontology Term
PANTHER:PTHR11661 | 60S RIBOSOMAL PROTEIN L12
 
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Ontology Term
PANTHER:PTHR11661:SF1 | 39S RIBOSOMAL PROTEIN L11, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF00298 | Ribosomal protein L11, RNA binding domain
Description: NULL
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Ontology Term
Pfam:PF03946 | Ribosomal protein L11, N-terminal domain
Description: The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.
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Ontology Term
PANTHER:PTHR31676 | T31J12.3 PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR31676:SF0 | CP PROTEIN
 
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Ontology Term
Pfam:PF04398 | Protein of unknown function, DUF538
Description: This family consists of several plant proteins of unknown function.
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Ontology Term
PANTHER:PTHR11431 | FERRITIN
 
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Ontology Term
Pfam:PF00210 | Ferritin-like domain
Description: This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.
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Ontology Term
PANTHER:PTHR11581 | 30S/40S RIBOSOMAL PROTEIN S4
 
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Ontology Term
Pfam:PF00900 | Ribosomal family S4e
Description: NULL
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Ontology Term
Pfam:PF08071 | RS4NT (NUC023) domain
Description: This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].
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Ontology Term
Pfam:PF14237 | GYF domain 2
Description: This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. It contains an evolutionary conserved signature W-X-Y-X6-11-GPF-X4-M-X2-W-X3-GYF, the site of interaction with proline-rich peptides. Family members include RME-8 (Required for receptor-mediated endocytosis 8), a DNAJC13 protein. RME-8 was first identified as a protein that is required for endocytosis in Caenorhabditis elegans. It coordinates the activity of the WASH complex with the function of the retromer SNX dimer to control endosomal tubulation [1]. Family members found in Arabidopsis include Arabidopsis trithorax-related3 (Atxr3), also known as set domain group 2 (Sdg2). It is the major enzyme responsible for H3K4me3 in Arabidopsis and SDG2-dependent H3K4m3 is critical for regulating gene expression and plant development [2]. Another family member found in Arabidopsis is Tic56. It is an essential subunit of a 1-MDa protein complex at the inner chloroplast envelope membrane [3]. Furthermore, Tic56 is important for rRNA processing and chloroplast ribosome assembly [4].
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Ontology Term
PANTHER:PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT
 
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Ontology Term
Pfam:PF03227 | Gamma interferon inducible lysosomal thiol reductase (GILT)
Description: This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences: Swiss:P13284 [1] and Swiss:Q9UL08 [2]. It also contains several other eukaryotic putative proteins with similarity to GILT [3]. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
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Ontology Term
Pfam:PF04689 | DNA binding protein S1FA
Description: S1FA is a DNA-binding protein found in plants that specifically recognises the negative promoter element S1F [1].
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Ontology Term
PANTHER:PTHR32523 | PHYTOL KINASE 1, CHLOROPLASTIC
 
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Ontology Term
Pfam:PF01148 | Cytidylyltransferase family
Description: The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
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Ontology Term
PANTHER:PTHR31728 | ABRAXAS FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR31728:SF1 | BRISC COMPLEX SUBUNIT ABRAXAS 2
 
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Ontology Term
PANTHER:PTHR19317 | PRENYLATED RAB ACCEPTOR 1-RELATED
 
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Ontology Term
PANTHER:PTHR11954 | D-DOPACHROME DECARBOXYLASE
 
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Ontology Term
Pfam:PF01187 | Macrophage migration inhibitory factor (MIF)
Description: NULL
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Ontology Term
PANTHER:PTHR11604 | PROFILIN
 
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Ontology Term
Pfam:PF00235 | Profilin
Description: NULL
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Ontology Term
PANTHER:PTHR12902 | WASP-1
 
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Ontology Term
PANTHER:PTHR11986 | AMINOTRANSFERASE CLASS III
 
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Ontology Term
PANTHER:PTHR11986:SF23 | ACETYLORNITHINE AMINOTRANSFERASE, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF00202 | Aminotransferase class-III
Description: NULL
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Ontology Term
PANTHER:PTHR16557 | ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED
 
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Ontology Term
Pfam:PF13532 | 2OG-Fe(II) oxygenase superfamily
Description: NULL
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Ontology Term
PANTHER:PTHR31388 | PEROXIDASE 72-RELATED
 
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Ontology Term
Pfam:PF00141 | Peroxidase
Description: NULL
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Ontology Term
Pfam:PF01937 | Damage-control phosphatase ARMT1-like domain
Description: This domain is widely distributed in all domains of life and occur in stand-alone form and as C-terminal fusions to pantothenate kinase (PanK) in plants and animals. They are metal-dependent phosphatases involved in metabolic damage-control processes termed "damage pre-emption" or "housecleaning". S.cerevisiae Damage-control phosphatase YMR027W and the human orthologue Damage-control phosphatase ARMT1 (also known as C6orf211) are involved in response to DNA damage, a damage pre-emption function. Crystal structure of Damage-control phosphatase At2g17340 from Arabidopsis revealed a novel protein fold and several conserved residues coordinating a metal ion (probably Mg2+), which exhibits a high degree of conservation, suggesting that the metal-binding site is central for the function [1].
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Ontology Term
PANTHER:PTHR11879 | ASPARTATE AMINOTRANSFERASE
 
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Ontology Term
PANTHER:PTHR32054 | HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED
 
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Ontology Term
PANTHER:PTHR32054:SF0 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1
 
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Ontology Term
Pfam:PF05701 | Weak chloroplast movement under blue light
Description: WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments [1]. Thus several member-sequences are described as "myosin heavy chain-like".
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Ontology Term
PANTHER:PTHR11480 | SAPOSIN-RELATED
 
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Ontology Term
Pfam:PF03489 | Saposin-like type B, region 2
Description: Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity [1,2]. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes [3].
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Ontology Term
Pfam:PF05184 | Saposin-like type B, region 1
Description: Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity [1,2]. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes [3].
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Ontology Term
Pfam:PF02721 | Domain of unknown function DUF223
Description: NULL
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Ontology Term
Pfam:PF04844 | Transcriptional repressor, ovate
Description: This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development [1,2].
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Ontology Term
Pfam:PF13724 | DNA-binding domain
Description: This domain, often found on ovate proteins, binds to single-stranded and double-stranded DNA. Binding to DNA is not sequence-specific [1].
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Ontology Term
PANTHER:PTHR11206 | MULTIDRUG RESISTANCE PROTEIN
 
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Ontology Term
Pfam:PF01554 | MatE
Description: The MatE domain
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Ontology Term
PANTHER:PTHR10566 | CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED
 
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Ontology Term
Pfam:PF01823 | MAC/Perforin domain
Description: The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerisation of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerises into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (Pfam:PF01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold [1].
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Ontology Term
Pfam:PF05659 | Arabidopsis broad-spectrum mildew resistance protein RPW8
Description: This family consists of several broad-spectrum mildew resistance proteins from Arabidopsis thaliana. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The Arabidopsis thaliana locus Resistance To Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes, RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [1,2].
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Ontology Term
PANTHER:PTHR13509 | SEC61 SUBUNIT BETA
 
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Ontology Term
Pfam:PF03911 | Sec61beta family
Description: This family consists of homologues of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane [1].
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Ontology Term
PANTHER:PTHR10985 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
 
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Ontology Term
PANTHER:PTHR15615 | UNCHARACTERIZED
 
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Ontology Term
PANTHER:PTHR15615:SF0 | PROTEIN CNPPD1
 
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Ontology Term
Pfam:PF08613 | Cyclin
Description: This family includes many different cyclin proteins. Members include the G1/S-specific cyclin pas1 [1], and the phosphate system cyclin PHO80/PHO85 [2].
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Ontology Term
Pfam:PF13912 | C2H2-type zinc finger
Description: NULL
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Ontology Term
PANTHER:PTHR11389 | ZINC FINGER PROTEIN
 
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Ontology Term
PANTHER:PTHR11389:SF380 | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR-LIKE PROTEIN
 
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Ontology Term
PANTHER:PTHR11048 | PRENYLTRANSFERASES
 
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Ontology Term
PANTHER:PTHR11048:SF1 | HOMOGENTISATE PHYTYLTRANSFERASE 1, CHLOROPLASTIC
 
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Ontology Term
Pfam:PF01040 | UbiA prenyltransferase family
Description: NULL
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Ontology Term
PANTHER:PTHR10094 | STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN
 
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Ontology Term
Pfam:PF02036 | SCP-2 sterol transfer family
Description: This domain is involved in binding sterols. It is found in the SCP2 protein Swiss:P22307, as well as the C terminus of Swiss:P51659 the enzyme estradiol 17 beta-dehydrogenase EC:1.1.1.62. The UNC-24 protein Swiss:Q17372 contains an SPFH domain Pfam:PF01145 [2].
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Ontology Term
PANTHER:PTHR23092 | POLY(A) RNA POLYMERASE
 
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Ontology Term
PANTHER:PTHR23092:SF1 | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR12482 | UNCHARACTERIZED
 
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Ontology Term
Pfam:PF05057 | Putative serine esterase (DUF676)
Description: This family of proteins are probably serine esterase type enzymes with an alpha/beta hydrolase fold.
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Ontology Term
Pfam:PF01909 | Nucleotidyltransferase domain
Description: Members of this family belong to a large family of nucleotidyltransferases [1]. This family includes kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase in-activates antibiotics by catalysing the addition of a nucleotidyl group onto the drug.
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Ontology Term
Pfam:PF03441 | FAD binding domain of DNA photolyase
Description: NULL
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Ontology Term
PANTHER:PTHR10783 | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED
 
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Ontology Term
PANTHER:PTHR10783:SF26 | SPX DOMAIN-CONTAINING PROTEIN 3
 
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Ontology Term
Pfam:PF03105 | SPX domain
Description: We have named this region the SPX domain after SYG1, Pho81 and XPR1. This 180 residue long domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N-terminus directly binds to the G-protein beta subunit and inhibits transduction of the mating pheromone signal [3]. Similarly, the N-terminus of the human XPR1 protein binds directly to the beta subunit of the G-protein heterotrimer leading to increased production of cAMP. These findings suggest that all the members of this family are involved in G-protein associated signal transduction. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 Swiss:P17442 from Saccharomyces cerevisiae and NUC-2 Swiss:Q01317 from Neurospora crassa, are also members of this family [4,5]. The SPX domain of S. cerevisiae low-affinity phosphate transporters Pho87 and Pho90 auto-regulates uptake and prevents efflux. This SPX dependent inhibition is mediated by the physical interaction with Spl2 [6] NUC-2 contains several ankyrin repeats Pfam:PF00023. Several members of this family are annotated as XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with murine xenotropic and polytropic leukaemia viruses (MLV) [1]. Infection by these retroviruses can inhibit XPR1-mediated cAMP signalling and result in cell toxicity and death [7]. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae, and many other diverse organisms [1,2,6,7]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction and may itself function as a phosphate sensor [1].
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Ontology Term
PANTHER:PTHR25040:SF79 | MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR10809 | VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
 
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Ontology Term
PANTHER:PTHR10809:SF6 | AT11025P-RELATED
 
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Ontology Term
Pfam:PF00635 | MSP (Major sperm protein) domain
Description: Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.
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Ontology Term
Pfam:PF03531 | Structure-specific recognition protein (SSRP1)
Description: SSRP1 has been implicated in transcriptional initiation and elongation and in DNA replication and repair [1]. This domain belongs to the Pleckstrin homology fold superfamily.
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Ontology Term
Pfam:PF03109 | ABC1 atypical kinase-like domain
Description: This family includes ABC1 from yeast [1] and AarF from E. coli [2]. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [1] and E. coli AarF is required for ubiquinone production [2]. It has been suggested that members of the ABC1 family are novel chaperonins [1]. These proteins are unrelated to the ABC transporter proteins.
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Ontology Term
Pfam:PF07160 | Spindle and kinetochore-associated protein 1
Description: Spindle and kinetochore-associated protein 1 (SKA1) is a component of the SKA1 complex (consists of Ska1, Ska2, and Ska3/Rama1), a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation [1].
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Ontology Term
PANTHER:PTHR31675:SF0 | AXIAL REGULATOR YABBY 1
 
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Ontology Term
PANTHER:PTHR21094 | GOS-28 SNARE- RELATED
 
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Ontology Term
PANTHER:PTHR21094:SF0 | GOLGI SNAP RECEPTOR COMPLEX MEMBER 1-1
 
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Ontology Term
Pfam:PF12352 | Snare region anchored in the vesicle membrane C-terminus
Description: Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle Pfam:PF05008.
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Ontology Term
PANTHER:PTHR32080 | ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE
 
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