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Search results 801 to 900 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0000687 | deletion_junction
Description: The space between two bases in a sequence which marks the position where a deletion has occurred.
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SO Term
SO:0000689 | cDNA_match
Description: A match against cDNA sequence.
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SO Term
SO:0000690 | gene_with_polycistronic_transcript
Description: A gene that encodes a polycistronic transcript.
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SO Term
SO:0000691 | cleaved_initiator_methionine
Description: The initiator methionine that has been cleaved from a mature polypeptide sequence.
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SO Term
SO:0000692 | gene_with_dicistronic_transcript
Description: A gene that encodes a dicistronic transcript.
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SO Term
SO:0000693 | gene_with_recoded_mRNA
Description: A gene that encodes an mRNA that is recoded.
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SO Term
SO:0001483 | SNV
Description: SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist.
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SO Term
SO:0000694 | SNP
Description: SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater.
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SO Term
SO:1000002 | substitution
Description: A sequence alteration where the length of the change in the variant is the same as that of the reference.
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SO Term
SO:0000697 | gene_with_stop_codon_read_through
Description: A gene that encodes a transcript with stop codon readthrough.
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SO Term
SO:0000883 | stop_codon_read_through
Description: A stop codon redefined to be a new amino acid.
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SO Term
SO:0000698 | gene_with_stop_codon_redefined_as_pyrrolysine
Description: A gene encoding an mRNA that has the stop codon redefined as pyrrolysine.
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SO Term
SO:0000884 | stop_codon_redefined_as_pyrrolysine
Description: A stop codon redefined to be the new amino acid, pyrrolysine.
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SO Term
SO:0000701 | possible_base_call_error
Description: A region of sequence where the validity of the base calling is questionable.
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SO Term
SO:0000702 | possible_assembly_error
Description: A region of sequence where there may have been an error in the assembly.
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SO Term
SO:0000703 | experimental_result_region
Description: A region of sequence implicated in an experimental result.
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SO Term
SO:0001420 | trans_splice_site
Description: Primary transcript region bordering trans-splice junction.
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SO Term
SO:0000706 | trans_splice_acceptor_site
Description: The 3' splice site of the acceptor primary transcript.
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SO Term
SO:0000707 | trans_splice_donor_site
Description: The 5' five prime splice site region of the donor RNA.
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SO Term
SO:0000708 | SL1_acceptor_site
Description: A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs.
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SO Term
SO:0000709 | SL2_acceptor_site
Description: A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0000885 | stop_codon_redefined_as_selenocysteine
Description: A stop codon redefined to be the new amino acid, selenocysteine.
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SO Term
SO:0000710 | gene_with_stop_codon_redefined_as_selenocysteine
Description: A gene encoding an mRNA that has the stop codon redefined as selenocysteine.
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SO Term
SO:0000711 | gene_with_mRNA_recoded_by_translational_bypass
Description: A gene with mRNA recoded by translational bypass.
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SO Term
SO:0000886 | recoded_by_translational_bypass
Description: Recoded mRNA where a block of nucleotides is not translated.
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SO Term
SO:0000712 | gene_with_transcript_with_translational_frameshift
Description: A gene encoding a transcript that has a translational frameshift.
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SO Term
SO:0000716 | dicistronic_mRNA
Description: An mRNA that has the quality dicistronic.
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SO Term
SO:0000718 | blocked_reading_frame
Description: A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons.
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SO Term
SO:0000720 | foreign_transposable_element
Description: A transposable element that is foreign.
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SO Term
SO:1001197 | dicistronic_primary_transcript
Description: A primary transcript that has the quality dicistronic.
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SO Term
SO:0000721 | gene_with_dicistronic_primary_transcript
Description: A gene that encodes a dicistronic primary transcript.
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SO Term
SO:0000722 | gene_with_dicistronic_mRNA
Description: A gene that encodes a polycistronic mRNA.
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SO Term
SO:0000723 | iDNA
Description: Genomic sequence removed from the genome, as a normal event, by a process of recombination.
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SO Term
SO:0000724 | oriT
Description: A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization.
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SO Term
SO:0000725 | transit_peptide
Description: The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle).
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SO Term
SO:0002252 | transit_peptide_region_of_CDS
Description: CDS region corresponding to a transit peptide region of a polypeptide.
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SO Term
SO:0000728 | intein
Description: A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond.
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SO Term
SO:0000729 | intein_containing
Description: An attribute of protein-coding genes where the initial protein product contains an intein.
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SO Term
SO:0000730 | gap
Description: A gap in the sequence of known length. The unknown bases are filled in with N's.
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SO Term
SO:0000731 | fragmentary
Description: An attribute to describe a feature that is incomplete.
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SO Term
SO:0000732 | predicted
Description: An attribute describing an unverified region.
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SO Term
SO:0000864 | exemplar
Description: An attribute describing a sequence is representative of a class of similar sequences.
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SO Term
SO:0000734 | exemplar_mRNA
Description: An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group.
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SO Term
SO:0000980 | minicircle
Description: A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs.
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SO Term
SO:0000750 | amplification_origin
Description: An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence.
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SO Term
SO:0000754 | lambda_vector
Description: The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome.
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SO Term
SO:0000755 | plasmid_vector
Description: A plasmid that has been generated to act as a vector for foreign sequence.
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SO Term
SO:0000757 | single_stranded_cDNA
Description: DNA synthesized from RNA by reverse transcriptase, single stranded.
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SO Term
SO:0000758 | double_stranded_cDNA
Description: DNA synthesized from RNA by reverse transcriptase that has been copied by PCR to make it double stranded.
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SO Term
SO:0000766 | pyrrolysyl_tRNA
Description: A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region.
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SO Term
SO:0001178 | pyrrolysine_tRNA_primary_transcript
Description: A primary transcript encoding pyrrolysyl tRNA (SO:0000766).
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SO Term
SO:0000768 | episome
Description: A plasmid that may integrate with a chromosome.
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SO Term
SO:0000847 | tmRNA_region
Description: A region of a tmRNA.
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SO Term
SO:0000769 | tmRNA_coding_piece
Description: The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together.
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SO Term
SO:0000770 | tmRNA_acceptor_piece
Description: The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together.
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SO Term
SO:0000771 | QTL
Description: A quantitative trait locus (QTL) is a polymorphic locus which contains alleles that differentially affect the expression of a continuously distributed phenotypic trait. Usually it is a marker described by statistical association to quantitative variation in the particular phenotypic trait that is thought to be controlled by the cumulative action of alleles at multiple loci.
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SO Term
SO:0000772 | genomic_island
Description: A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility.
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SO Term
SO:0000773 | pathogenic_island
Description: Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species.
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SO Term
SO:0000774 | metabolic_island
Description: A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria.
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SO Term
SO:0000775 | adaptive_island
Description: An adaptive island is a genomic island that provides an adaptive advantage to the host.
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SO Term
SO:0000776 | symbiosis_island
Description: A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria.
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SO Term
SO:0000777 | pseudogenic_rRNA
Description: A non functional descendant of an rRNA.
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SO Term
SO:0000778 | pseudogenic_tRNA
Description: A non functional descendent of a tRNA.
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SO Term
SO:0000779 | engineered_episome
Description: An episome that is engineered.
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SO Term
SO:0000782 | natural
Description: An attribute describing a feature that occurs in nature.
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SO Term
SO:0000785 | cloned_region
Description: The region of sequence that has been inserted and is being propagated by the clone.
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SO Term
SO:0000794 | engineered_rescue_region
Description: A rescue region that is engineered.
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SO Term
SO:0000815 | mini_gene
Description: By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA.
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SO Term
SO:0000795 | rescue_mini_gene
Description: A mini_gene that rescues.
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SO Term
SO:0000796 | transgenic_transposable_element
Description: TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE.
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SO Term
SO:0000797 | natural_transposable_element
Description: TE that exists (or existed) in nature.
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SO Term
SO:0001038 | extrachromosomal_mobile_genetic_element
Description: An MGE that is not integrated into the host chromosome.
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SO Term
SO:0000798 | engineered_transposable_element
Description: TE that has been modified by manipulations in vitro.
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SO Term
SO:0000799 | engineered_foreign_transposable_element
Description: A transposable_element that is engineered and foreign.
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SO Term
SO:0001504 | assortment_derived_variation
Description: A chromosome variation derived from an event during meiosis.
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SO Term
SO:0000800 | assortment_derived_duplication
Description: A multi-chromosome duplication aberration generated by reassortment of other aberration components.
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SO Term
SO:0000801 | assortment_derived_deficiency_plus_duplication
Description: A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication.
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SO Term
SO:0000802 | assortment_derived_deficiency
Description: A multi-chromosome deficiency aberration generated by reassortment of other aberration components.
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SO Term
SO:0000803 | assortment_derived_aneuploid
Description: A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication.
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SO Term
SO:0000807 | engineered_tag
Description: A tag that is engineered.
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SO Term
SO:0000808 | validated_cDNA_clone
Description: A cDNA clone that has been validated.
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SO Term
SO:0000809 | invalidated_cDNA_clone
Description: A cDNA clone that is invalid.
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SO Term
SO:0000810 | chimeric_cDNA_clone
Description: A cDNA clone invalidated because it is chimeric.
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SO Term
SO:0000811 | genomically_contaminated_cDNA_clone
Description: A cDNA clone invalidated by genomic contamination.
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SO Term
SO:0000812 | polyA_primed_cDNA_clone
Description: A cDNA clone invalidated by polyA priming.
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SO Term
SO:0000813 | partially_processed_cDNA_clone
Description: A cDNA invalidated clone by partial processing.
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SO Term
SO:0000816 | rescue_gene
Description: A gene that rescues.
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SO Term
SO:0000817 | wild_type
Description: An attribute describing sequence with the genotype found in nature and/or standard laboratory stock.
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SO Term
SO:0000818 | wild_type_rescue_gene
Description: A gene that rescues.
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SO Term
SO:0000819 | mitochondrial_chromosome
Description: A chromosome originating in a mitochondria.
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SO Term
SO:0000820 | chloroplast_chromosome
Description: A chromosome originating in a chloroplast.
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SO Term
SO:0000821 | chromoplast_chromosome
Description: A chromosome originating in a chromoplast.
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SO Term
SO:0000822 | cyanelle_chromosome
Description: A chromosome originating in a cyanelle.
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SO Term
SO:0000823 | leucoplast_chromosome
Description: A chromosome with origin in a leucoplast.
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SO Term
SO:0000824 | macronuclear_chromosome
Description: A chromosome originating in a macronucleus.
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SO:0000825 | micronuclear_chromosome
Description: A chromosome originating in a micronucleus.
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SO Term
SO:0000828 | nuclear_chromosome
Description: A chromosome originating in a nucleus.
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SO Term
SO:0000829 | nucleomorphic_chromosome
Description: A chromosome originating in a nucleomorph.
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SO Term
SO:0000853 | homologous_region
Description: A region that is homologous to another region.
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SO Term
SO:0000857 | homologous
Description: Similarity due to common ancestry.
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