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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR24093:SF126 | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED
 
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Ontology Term
PANTHER:PTHR12628 | POLYCOMB-LIKE TRANSCRIPTION FACTOR
 
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Ontology Term
PANTHER:PTHR12628:SF10 | C. ELEGANS HOMEOBOX
 
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Ontology Term
PANTHER:PTHR11079 | CYTOSINE DEAMINASE FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR11079:SF9 | CMP/DCMP DEAMINASE, ZINC-BINDING DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
PANTHER:PTHR13621 | PROLINE-RICH PROTEIN PRCC
 
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Ontology Term
PANTHER:PTHR13621:SF2 | PROLINE-RICH PROTEIN PRCC
 
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Ontology Term
Pfam:PF10253 | Mitotic checkpoint regulator, MAD2B-interacting
Description: This family constitutes the major, conserved, portion of PRCC proteins. In humans this family interacts with MAD2B, the mitotic checkpoint protein [1,2]. In Schizosaccharomyces pombe this protein is part of the Cwf-complex that is known to be involved in pre-mRNA splicing [3].
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Ontology Term
PANTHER:PTHR23216 | NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1
 
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Ontology Term
Pfam:PF05022 | SRP40, C-terminal domain
Description: This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein Swiss:P32583 and its homologues. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.
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Ontology Term
PANTHER:PTHR21266:SF2 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC
 
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Ontology Term
Pfam:PF00848 | Ring hydroxylating alpha subunit (catalytic domain)
Description: This family is the catalytic domain of aromatic-ring- hydroxylating dioxygenase systems. The active site contains a non-heme ferrous ion coordinated by three ligands.
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Ontology Term
Pfam:PF09753 | Membrane fusion protein Use1
Description: This entry is of a family of proteins all approximately 300 residues in length. The proteins have a single C-terminal trans-membrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport.
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Ontology Term
PANTHER:PTHR15664 | C20ORF30 PROTEIN
 
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Ontology Term
PANTHER:PTHR15664:SF0 | TRANSMEMBRANE PROTEIN 230
 
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Ontology Term
PANTHER:PTHR13026 | NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52
 
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Ontology Term
Pfam:PF05997 | Nucleolar protein,Nop52
Description: Nop52 believed to be involved in the generation of 28S rRNA [1].
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Ontology Term
Pfam:PF04231 | Endonuclease I
Description: Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown [1]. Other family members are known to be extracellular [2]. This family also includes a non-specific, Mg2+ activated ribonuclease precursor (Swiss:Q03091) [3].
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Ontology Term
PANTHER:PTHR12732 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING
 
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Ontology Term
PANTHER:PTHR13636 | UNCHARACTERIZED
 
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Ontology Term
PANTHER:PTHR13636:SF0 | TRANSMEMBRANE PROTEIN 258
 
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Ontology Term
Pfam:PF05251 | Oligosaccharyltransferase subunit 5
Description: Eukaryotic N-glycosylation is catalysed in the ER lumen, where the enzyme oligosaccharyltransferase (OTase) transfers donor glycans from a dolichol pyrophosphate (DolP) carrier (Lipid-linked oligosaccharide; LLO) to polypeptides. The yeast OTase is a hetero-oligomeric complex composed of essential (Ost1, Ost2, Wbp1, Stt3, and Swp1) and nonessential (Ost3, Ost4, Ost5, and Ost6) subunits. This domain family is found in Ost5, Swiss:Q92316. The precise function of this subunit is not known, however Ost5 appears to form a sub-complex with Ost1, and this sub-complex associates with the catalytic Stt3 subunit of OTase. Down regulation of Ost5 resulted in a limited effect on glycosylation and no effect on the stability of Ost1 or Stt3 subunits [1, 2].
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Ontology Term
PANTHER:PTHR12072 | CWF19, CELL CYCLE CONTROL PROTEIN
 
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Ontology Term
Pfam:PF04677 | Protein similar to CwfJ C-terminus 1
Description: This region is found in the N terminus of Schizosaccharomyces pombe protein CwfJ (Swiss:Q09909). CwfJ is part of the Cdc5p complex involved in mRNA splicing [1].
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Ontology Term
PANTHER:PTHR23382 | MALATE DEHYDROGENASE
 
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Ontology Term
PANTHER:PTHR23382:SF0 | MALATE DEHYDROGENASE 2, MITOCHONDRIAL-RELATED
 
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Ontology Term
PANTHER:PTHR21366 | GLYOXALASE FAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR21366:SF0 | GLYOXALASE DOMAIN-CONTAINING PROTEIN 5
 
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Ontology Term
PANTHER:PTHR13100 | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR
 
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Ontology Term
PANTHER:PTHR22841 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR10314:SF5 | THREONINE SYNTHASE 1, CHLOROPLASTIC
 
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Ontology Term
PANTHER:PTHR13408 | DNA-DIRECTED RNA POLYMERASE III
 
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Ontology Term
Pfam:PF05132 | RNA polymerase III RPC4
Description: Specific subunit for Pol III, the tRNA specific polymerase.
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Ontology Term
PANTHER:PTHR12465 | UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49
 
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Ontology Term
PANTHER:PTHR12465:SF0 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20
 
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Ontology Term
Pfam:PF08612 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex
Description: This family of proteins is related to TATA-binding protein (TBP). TBP is a highly conserved RNA polymerase II general transcription factor that binds to the core promoter and initiates assembly of the preinitiation complex. Human TRF has been shown to associate with an RNA polymerase II-SRB complex [1]. This Med20 subunit of Mediator is found in the non-essential part of the head [2].
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Ontology Term
PANTHER:PTHR13533:SF5 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR10338 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR21427 | UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR21576:SF2 | RRP12-LIKE PROTEIN
 
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Ontology Term
Pfam:PF08161 | NUC173 domain
Description: This is the central domain of of novel family of hypothetical nucleolar proteins [1].
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Ontology Term
PANTHER:PTHR23426:SF1 | ADRENODOXIN-LIKE PROTEIN, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR10794 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
PANTHER:PTHR13022 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11
 
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Ontology Term
PANTHER:PTHR15629 | SH3YL1 PROTEIN
 
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Ontology Term
PANTHER:PTHR15629:SF2 | SH3 DOMAIN-CONTAINING YSC84-LIKE PROTEIN 1
 
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Ontology Term
Pfam:PF04366 | Las17-binding protein actin regulator
Description: Ysc84 is a family of Las17-binding proteins found in metazoa. Together, Las17 and Ysc84 are essential for proper polymerisation of actin; Ysc84 is able to bind to and stabilise the actin dimer presented by Las17 and thereby promote polymerisation. An active actin cytoskeleton is necessary for adequate endocytosis. (Pfam:PF00018), or a FYVE zinc finger (Pfam:PF01363).
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Ontology Term
PANTHER:PTHR13302 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
 
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Ontology Term
Pfam:PF04136 | Sec34-like family
Description: Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (Pfam:PF04124). This complex is thought to be important for tethering vesicles to the Golgi [1].
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Ontology Term
Pfam:PF14520 | Helix-hairpin-helix domain
Description: NULL
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Ontology Term
Pfam:PF06941 | 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
Description: This family consists of several 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C (NT5C) proteins. 5'(3')-Deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [1].
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Ontology Term
PANTHER:PTHR13343 | CREG1 PROTEIN
 
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Ontology Term
Pfam:PF13883 | Pyridoxamine 5'-phosphate oxidase
Description: NULL
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Ontology Term
PANTHER:PTHR12668:SF0 | UPF0136 MEMBRANE PROTEIN CG5532
 
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Ontology Term
PANTHER:PTHR23071 | PHOSPHATIDYLINOSITOL GLYCAN
 
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Ontology Term
PANTHER:PTHR10019 | SNF5
 
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Ontology Term
Pfam:PF04855 | SNF5 / SMARCB1 / INI1
Description: SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far [1]. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex [2]. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [3].
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Ontology Term
PANTHER:PTHR10799:SF43 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1
 
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Ontology Term
PANTHER:PTHR10997 | IMPORTIN-7, 8, 11
 
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Ontology Term
PANTHER:PTHR16166:SF61 | CALCIUM-DEPENDENT LIPID-BINDING-LIKE PROTEIN
 
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Ontology Term
PANTHER:PTHR23227 | BUCENTAUR RELATED
 
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Ontology Term
Pfam:PF07572 | Bucentaur or craniofacial development
Description: Bucentaur or craniofacial development protein 1 (BCNT) in ruminents has a different domain architecture to that in mouse and human. For this reason it has been used as a model for molecular evolution [1-3]. Both bovine and human BCNTs are phosphorylated by casein kinase II in vitro [4].
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Ontology Term
PANTHER:PTHR10724 | 30S RIBOSOMAL PROTEIN S1
 
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Ontology Term
PANTHER:PTHR12075 | TRANSCRIPTION INITIATION FACTOR TFIID COMPONENT
 
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Ontology Term
Pfam:PF02291 | Transcription initiation factor IID, 31kD subunit
Description: This family represents the N-terminus of the 31kD subunit (42kD in drosophila) of transcription initiation factor IID (TAFII31). TAFII31 binds to p53, and is an essential requirement for p53 mediated transcription activation.
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Ontology Term
PANTHER:PTHR20994:SF0 | ER MEMBRANE PROTEIN COMPLEX SUBUNIT 6
 
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Ontology Term
PANTHER:PTHR10457:SF7 | GALACTOKINASE-RELATED
 
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Ontology Term
Pfam:PF10509 | Galactokinase galactose-binding signature
Description: This is the highly conserved galactokinase signature sequence which appears to be present in all galactokinases irrespective of how many other ATP binding sites, etc that they carry [1]. The function of this domain appears to be to bind galactose [2], and the domain is normally at the N-terminus of the enzymes, EC:2.7.1.6 [3]. This domain is associated with the families GHMP_kinases_C, Pfam:PF08544 and GHMP_kinases_N, Pfam:PF00288.
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Ontology Term
PANTHER:PTHR11630:SF44 | DNA REPLICATION LICENSING FACTOR MCM2
 
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Ontology Term
PANTHER:PTHR31515:SF0 | TRANSMEMBRANE PROTEIN
 
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Ontology Term
Pfam:PF03070 | TENA/THI-4/PQQC family
Description: Members of this family are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase [1]. The THI-4 protein, which is involved in thiamine biosynthesis, is also a member of this family. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 [2]. This family includes bacterial coenzyme PQQ synthesis protein C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is the prosthetic group of several bacterial enzymes,including methanol dehydrogenase of methylotrophs and the glucose dehydrogenase of a number of bacteria [3]. PQQC has been found to be required in the synthesis of PQQ but its function is unclear. The exact molecular function of members of this family is uncertain.
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Ontology Term
PANTHER:PTHR13491 | ZCCHC10 PROTEIN
 
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Ontology Term
Pfam:PF13917 | Zinc knuckle
Description: The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.
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Ontology Term
Pfam:PF04802 | Phosphatase 4 regulatory subunit 3
Description: This entry represents the Serine/threonine-protein phosphatase 4 regulatory subunit 3 (also known as SMEK homologue) PP4R3, which forms a complex with the phosphatase 4 catalytic subunit (PP4c), localising it to the DNA damage repair machinery [1-4] and regulates its activity. PP4c is involved in developmental progression, chemotaxis, expression of stress response genes and cell movement.
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Ontology Term
PANTHER:PTHR32487 | 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE
 
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Ontology Term
PANTHER:PTHR32487:SF0 | NAD DEPENDENT EPIMERASE/DEHYDRATASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G00600)
 
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Ontology Term
PANTHER:PTHR13389 | UNCHARACTERIZED
 
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Ontology Term
PANTHER:PTHR13389:SF0 | PUMILIO HOMOLOG 3
 
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Ontology Term
PANTHER:PTHR13832:SF198 | PROTEIN PHOSPHATASE 2C 34-RELATED
 
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Ontology Term
PANTHER:PTHR31346 | MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED
 
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Ontology Term
PANTHER:PTHR11820 | ACYLPYRUVASE
 
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Ontology Term
PANTHER:PTHR11820:SF7 | ACYLPYRUVASE FAHD1, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF01557 | Fumarylacetoacetate (FAA) hydrolase family
Description: This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle [1]. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms [1]. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites [3]. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded by mhpD in E. coli Swiss:P77608 is involved in the phenylpropionic acid pathway of E. coli and catalyses the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor [5]. OHED hydratase encoded by hpcG in E. coli Swiss:P42270 is involved in the homoprotocatechuic acid (HPC) catabolism [6]. XylI in P. putida Swiss:P49155 is a 4-Oxalocrotonate decarboxylase [7].
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Ontology Term
Pfam:PF00198 | 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Description: These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.
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Ontology Term
PANTHER:PTHR23309 | 3-HYDROXYACYL-COA DEHYROGENASE
 
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Ontology Term
Pfam:PF00725 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
Description: This family also includes lambda crystallin. Some proteins include two copies of this domain.
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Ontology Term
Pfam:PF02737 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Description: This family also includes lambda crystallin.
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Ontology Term
PANTHER:PTHR22847:SF124 | TRANSDUCIN/WD40 DOMAIN-CONTAINING PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR11064:SF9 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
 
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Ontology Term
PANTHER:PTHR24015:SF117 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR12085 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA
 
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Ontology Term
PANTHER:PTHR12085:SF3 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA
 
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Ontology Term
PANTHER:PTHR23244:SF246 | KELCH REPEAT-CONTAINING PROTEIN
 
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Ontology Term
PANTHER:PTHR10799:SF73 | CHROMATIN-REMODELING COMPLEX ATPASE CHAIN ISWI
 
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Ontology Term
Pfam:PF09110 | HAND
Description: The HAND domain adopts a secondary structure consisting of four alpha helices, three of which (H2, H3, H4) form an L-like configuration. Helix H2 runs antiparallel to helices H3 and H4, packing closely against helix H4, whilst helix H1 reposes in the concave surface formed by these three helices and runs perpendicular to them. The domain confers DNA and nucleosome binding properties to the protein [1].
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Ontology Term
Pfam:PF09111 | SLIDE
Description: The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (Pfam:PF00249) repeats or homeodomains [1].
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Ontology Term
PANTHER:PTHR16008 | F-BOX ONLY PROTEIN 4
 
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Ontology Term
PANTHER:PTHR16008:SF6 | SI:DKEY-12E7.1
 
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Ontology Term
Pfam:PF13292 | 1-deoxy-D-xylulose-5-phosphate synthase
Description: This family contains 1-deoxyxylulose-5-phosphate synthase (DXP synthase), an enzyme which catalyses the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate, to yield 1-deoxy-D- xylulose-5-phosphate, a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6).
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Ontology Term
PANTHER:PTHR22931 | PHOSPHOENOLPYRUVATE DIKINASE-RELATED
 
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