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Search results 2801 to 2900 out of 44733 for *

Category restricted to GOTerm (x)

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Category: GOTerm
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Type Details Score
GO Term
GO:0000802 | transverse filament
Description: A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them.
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GO Term
GO:0000803 | sex chromosome
Description: A chromosome involved in sex determination.
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GO Term
GO:0000804 | W chromosome
Description: The sex chromosome present in females of species in which the female is the heterogametic sex; generally, the sex chromosome that pairs with the Z chromosome in the heterogametic sex. The W chromosome is absent from the cells of males and present in one copy in the somatic cells of females.
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GO Term
GO:0000805 | X chromosome
Description: The sex chromosome present in both sexes of species in which the male is the heterogametic sex. Two copies of the X chromosome are present in each somatic cell of females and one copy is present in males.
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GO Term
GO:0000806 | Y chromosome
Description: The sex chromosome present in males of species in which the male is the heterogametic sex; generally, the sex chromosome that pairs with the X chromosome in the heterogametic sex. The Y chromosome is absent from the cells of females and present in one copy in the somatic cells of males.
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GO Term
GO:0000807 | Z chromosome
Description: The sex chromosome present in both sexes of species in which the female is the heterogametic sex. Two copies of the Z chromosome are present in each somatic cell of males and one copy is present in females.
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GO Term
GO:0000809 | cytoplasmic origin of replication recognition complex
Description: A multisubunit complex that is located at the replication origins of a chromosome in the cytoplasm.
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GO Term
GO:0000810 | diacylglycerol diphosphate phosphatase activity
Description: Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.
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GO Term
GO:0036452 | ESCRT complex
Description: An endosomal sorting complex involved in membrane fission processes related to sorting of multivesicular bodies (MVB) in the endocytic pathway, cytokinesis and viral budding among other processes.
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GO Term
GO:0000815 | ESCRT III complex
Description: An endosomal sorting complex required for transport. Consists of two soluble subcomplexes of highly charged coiled-coil proteins and is required for sorting and/or concentration of multivesicular body (MVB) cargoes.
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GO Term
GO:0000817 | COMA complex
Description: A multiprotein complex in yeast consisting of Ctf19p, Okp1p, Mcm21p, and Ame1p. This complex bridges the subunits that are in contact with centromeric DNA and the subunits bound to microtubules during kinetochore assembly.
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GO Term
GO:0000818 | nuclear MIS12/MIND complex
Description: A multiprotein kinetochore subcomplex that binds to centromeric chromatin and forms part of the inner kinetochore of a chromosome in the nucleus. It helps to recruit outer kinetochore subunits that will bind to microtubules. Nuclear localization arises in some organisms because the nuclear envelope is not broken down during mitosis. In S. cerevisiae, it consists of at least four proteins: Mtw1p, Nnf1p, Nsl1p, and Dsn1.
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GO Term
GO:0000820 | regulation of glutamine family amino acid metabolic process
Description: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline.
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GO Term
GO:0033238 | regulation of cellular amine metabolic process
Description: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform amines.
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GO Term
GO:0062012 | regulation of small molecule metabolic process
Description: Any process that modulates the rate, frequency or extent of a small molecule metabolic process.
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GO Term
GO:0010565 | regulation of cellular ketone metabolic process
Description: Any process that modulates the chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.
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GO Term
GO:0000821 | regulation of arginine metabolic process
Description: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
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GO Term
GO:0000822 | inositol hexakisphosphate binding
Description: Interacting selectively and non-covalently with inositol hexakisphosphate.
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GO Term
GO:0043178 | alcohol binding
Description: Interacting selectively and non-covalently with an alcohol, any of a class of alkyl compounds containing a hydroxyl group.
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GO Term
GO:0051766 | inositol trisphosphate kinase activity
Description: Catalysis of the reaction: inositol trisphosphate + ATP = inositol tetrakisphosphate + ADP.
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GO Term
GO:0000823 | inositol-1,4,5-trisphosphate 6-kinase activity
Description: Catalysis of the reaction: D-myo-inositol 1,4,5-trisphosphate + ATP = D-myo-inositol 1,4,5,6-tetrakisphosphate + ADP + 2 H(+).
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GO Term
GO:0051765 | inositol tetrakisphosphate kinase activity
Description: Catalysis of the reaction: inositol tetrakisphosphate + ATP = inositol pentakisphosphate + ADP.
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GO Term
GO:0000824 | inositol tetrakisphosphate 3-kinase activity
Description: Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5,6-tetrakisphosphate = ADP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate.
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GO Term
GO:0000825 | inositol tetrakisphosphate 6-kinase activity
Description: Catalysis of the reaction: 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP.
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GO Term
GO:0000827 | inositol-1,3,4,5,6-pentakisphosphate kinase activity
Description: Catalysis of the reaction: ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate = ADP + diphospho-1D-myo-inositol tetrakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol tetrakisphosphate is unknown.
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GO Term
GO:0000828 | inositol hexakisphosphate kinase activity
Description: Catalysis of the reaction: ATP + 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate = ADP + diphospho-1D-myo-inositol-pentakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol-pentakisphosphate (PP-IP5) is unknown.
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GO Term
GO:0000830 | inositol hexakisphosphate 4-kinase activity
Description: Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 4-diphospho-1D-myo-inositol (1,2,3,5,6)pentakisphosphate.
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GO Term
GO:0000831 | inositol hexakisphosphate 6-kinase activity
Description: Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 6-diphospho-1D-myo-inositol (1,2,3,4,5)pentakisphosphate.
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GO Term
GO:0000832 | inositol hexakisphosphate 5-kinase activity
Description: Catalysis of the reaction: ATP + 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate = ADP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate.
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GO Term
GO:0000833 | inositol heptakisphosphate 4-kinase activity
Description: Catalysis of the reaction: ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = 4,5-bisdiphosphoinositol-1D-myoinositol (1,2,3,6)tetrakisphosphate.
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GO Term
GO:0000834 | inositol heptakisphosphate 6-kinase activity
Description: Catalysis of the reaction: ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = 5,6-bisdiphosphoinositol-1D-myoinositol (1,2,3,4)tetrakisphosphate.
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GO Term
GO:0000835 | ER ubiquitin ligase complex
Description: A ubiquitin ligase complex found in the ER.
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GO Term
GO:0000836 | Hrd1p ubiquitin ligase complex
Description: A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal and membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p. In mammals, this complex contains the ubiquitin ligase HRD1 (Synoviolin) or AMFR (gp78).
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GO Term
GO:0000837 | Doa10p ubiquitin ligase complex
Description: A multiprotein complex that recognizes and ubiquitinates membrane proteins with misfolded cytosolic domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Ssm4p/Doa10p.
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GO Term
GO:0000838 | Hrd1p ubiquitin ligase ERAD-M complex
Description: A multiprotein complex that recognizes and ubiquitinates proteins with misfolded membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p.
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GO Term
GO:0000839 | Hrd1p ubiquitin ligase ERAD-L complex
Description: A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p.
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GO Term
GO:0045183 | translation factor activity, non-nucleic acid binding
Description: A translation regulator activity that does not involve binding to nucleic acids.
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GO Term
GO:0000901 | translation repressor activity, non-nucleic acid binding
Description: Antagonizes the ribosome-mediated translation of mRNA into a polypeptide but does not bind directly to nucleic acid.
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GO Term
GO:0030584 | sporocarp development
Description: The process whose specific outcome is the progression of a sporocarp over time, from its formation to the mature structure. The sporocarp is a spore bearing fruiting body organ. An example of this process is found in the Fungal species Coprinopsis cinerea.
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GO Term
GO:0000905 | sporocarp development involved in asexual reproduction
Description: The formation of a spore-bearing structure by fungus where spores will arise from asexual reproduction.
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GO Term
GO:0019954 | asexual reproduction
Description: The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process.
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GO Term
GO:0030582 | reproductive fruiting body development
Description: The process whose specific outcome is the progression of a reproductive fruiting body over time, from its formation to the mature structure. A reproductive fruiting body is a multicellular reproductive structure that contains spores.
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GO Term
GO:0075259 | spore-bearing structure development
Description: The process whose specific outcome is the progression of a spore-bearing structure over time, from its formation to the mature structure. A spore-bearing structure is an anatomical structure that produces new spores.
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GO Term
GO:0000907 | sulfonate dioxygenase activity
Description: Catalysis of the reaction: sulfonate + 2-oxoglutarate + O2 = sulfite + aminoacetaldehyde + succinate + CO2.
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GO Term
GO:0000908 | taurine dioxygenase activity
Description: Catalysis of the reaction: 2-oxoglutarate + O(2) + taurine = aminoacetaldehyde + CO(2) + succinate + sulfite.
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GO Term
GO:0000909 | sporocarp development involved in sexual reproduction
Description: The process whose specific outcome is the progression of a fruiting body organ over time, from its formation to the mature structure. The fruiting body is a spore bearing structure. In fungi, the sporocarp (also known as fruiting body) is a multicellular structure on which spore-producing structures, such as basidia or asci, are borne. The fruiting body is part of the sexual phase of a fungal life cycle, with the rest of the life cycle being characterized by vegetative mycelial growth. The sporocarp of a basidiomycete is known as a basidiocarp, while the fruiting body of an ascomycete is known as an ascocarp. A significant range of different shapes and morphologies is found in both basidiocarps and ascocarps; these features play an important role in the identification and taxonomy of fungi.
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GO Term
GO:0000913 | preprophase band assembly
Description: The aggregation, arrangement and bonding together of a set of components to form the preprophase band, a dense band of microtubules that marks the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation.
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GO Term
GO:1902407 | assembly of actomyosin apparatus involved in mitotic cytokinesis
Description: Any assembly of mitotic cytokinetic actomyosin apparatus.
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GO Term
GO:1902410 | mitotic cytokinetic process
Description: Any cytokinetic process that is involved in mitotic cell cycle.
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GO Term
GO:0000916 | actomyosin contractile ring contraction
Description: The process of an actomyosin ring getting smaller in diameter, in the context of cytokinesis that takes place as part of a cell cycle.
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GO Term
GO:0036213 | contractile ring contraction
Description: The process of an actomyosin ring getting smaller in diameter.
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GO Term
GO:0000919 | cell plate assembly
Description: The process of assembly, maturation, and growth of the cell plate to the cell periphery in cells that divide by cell plate formation; often involves deposition of cell wall material in and around the phragmoplast.
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GO Term
GO:0000920 | septum digestion after cytokinesis
Description: The process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis.
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GO Term
GO:0000923 | equatorial microtubule organizing center
Description: A microtubule organizing center formed by a band of gamma-tubulin that is recruited to a circumferential band of F-actin at the midpoint of a cell and which nucleates microtubules from the cell division site at the end of mitosis.
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GO Term
GO:0000924 | gamma-tubulin ring complex, centrosomal
Description: A centrosome-localized multiprotein complex composed of gamma-tubulin and other non-tubulin proteins assembled into a ring structure that is thought to be the unit of nucleation at the minus end of a microtubule. Gamma-tubulin small complexes are thought to be the core repeating units of the ring.
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GO Term
GO:0008275 | gamma-tubulin small complex
Description: A complex usually comprising two gamma-tubulin molecules and two conserved non-tubulin proteins. Some gamma-tubulin small complexes are thought to be the repeating unit making up the core of the gamma-tubulin ring complex.
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GO Term
GO:0000927 | gamma-tubulin small complex, centrosomal
Description: A centrosomal complex usually comprising two gamma-tubulin molecules, at least two conserved non-tubulin proteins that multimerize along with additional non-tubulin proteins in animal cells into larger functional complexes. Gamma-tubulin small complexes are thought to be the repeating unit making up the core of the gamma-tubulin ring complex. An example of this structure is found in Mus musculus.
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GO Term
GO:0000928 | gamma-tubulin small complex, spindle pole body
Description: A complex composed of two gamma-tubulin molecules and conserved non-tubulin proteins located in the spindle pole body and isolated by fractionation from cells. The complex, approximately 6S-9S, is analogous to the small complex in animal cells but contains fewer subunits, and is not thought to multimerize into larger functional units, like complexes in those organisms. An example of this structure is found in Saccharomyces cerevisiae.
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GO Term
GO:0000933 | adventitious septum
Description: A cell septum whose formation is independent of nuclear division.
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GO Term
GO:0000934 | porous cell septum
Description: A septum or cross wall which does not entirely span the space between two portions of cell wall and may contain a specialized central pore structure. A porous septum allows the movement of organelles and/or cytoplasm between compartments.
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GO Term
GO:0000935 | division septum
Description: A cell septum which forms as part of the division site and functions in the compartmentalization of a cell into two daughter cells at division. A division septum spans a cell and does not allow exchange of organelles or cytoplasm between compartments.
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GO Term
GO:0000936 | primary cell septum
Description: A cell septum that forms following nuclear division.
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GO Term
GO:0000937 | dolipore septum
Description: A septum, or cross-wall, between two portions of a cell or hypha; contains a central pore around which the septum is swollen to form a barrel-shaped structure; pore is covered on each side of the septum by a septal pore cap (parenthosome).
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GO Term
GO:0000939 | condensed chromosome inner kinetochore
Description: The region of a condensed chromosome kinetochore closest to centromeric DNA; in mammals the CREST antigens (CENP proteins) are found in this layer; this layer may help define underlying centromeric chromatin structure and position of the kinetochore on the chromosome.
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GO Term
GO:0000941 | condensed nuclear chromosome inner kinetochore
Description: The region of a condensed nuclear chromosome kinetochore closest to centromeric DNA; this layer may help define underlying centromeric chromatin structure and position of the kinetochore on the chromosome.
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GO Term
GO:0000942 | condensed nuclear chromosome outer kinetochore
Description: The region of a condensed nuclear chromosome kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions.
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GO Term
GO:0000943 | retrotransposon nucleocapsid
Description: A complex of the retrotransposon RNA genome, reverse transcriptase, integrase, and associated molecules required for reproduction and integration of the retrotransposon into the host genome; the main structural molecule of the nucleocapsid is often a gag protein homolog.
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GO Term
GO:0000947 | amino acid catabolic process to alcohol via Ehrlich pathway
Description: The chemical reactions and pathways involving the catabolism of amino acids to produce alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.
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GO Term
GO:0000955 | amino acid catabolic process via Ehrlich pathway
Description: The chemical reactions and pathways involving the catabolism of amino acids to produce alcohols or carboxylic acids containing one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives, sometimes referred to as fusel acids, may be produced instead of alcohols.
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GO Term
GO:0000948 | amino acid catabolic process to carboxylic acid via Ehrlich pathway
Description: The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids.
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GO Term
GO:0000949 | aromatic amino acid family catabolic process to alcohol via Ehrlich pathway
Description: The chemical reactions and pathways involving the catabolism of aromatic amino acids to produce aromatic alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino acid, phenylalanine, tyrosine, or tryptophan, is used as the substrate, 2-phenylethanol, 4-hydroxyphenylethanol, or tryptophol, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.
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GO Term
GO:0000950 | branched-chain amino acid catabolic process to alcohol via Ehrlich pathway
Description: The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched chain family amino acid, leucine, isoleucine, or valine, is used as the substrate, 3-methylbutanol, 2-methylbutanol, or 2-methylpropanol, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.
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GO Term
GO:0009087 | methionine catabolic process
Description: The chemical reactions and pathways resulting in the breakdown of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
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GO Term
GO:0000951 | methionine catabolic process to 3-methylthiopropanol
Description: The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When methionine is used as the substrate, 3-methylthiopropanol is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.
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GO Term
GO:0009068 | aspartate family amino acid catabolic process
Description: The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
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GO Term
GO:1901606 | alpha-amino acid catabolic process
Description: The chemical reactions and pathways resulting in the breakdown of an alpha-amino acid.
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GO Term
GO:0000952 | aromatic amino acid family catabolic process to carboxylic acid via Ehrlich pathway
Description: The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino acid, phenylalanine, tyrosine, or tryptophan, is used as the substrate, 2-phenylethanoate, 4-hydroxyphenylethanoate, or 2-(Indol-3-yl)-ethanoate, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids.
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GO Term
GO:0000953 | branched-chain amino acid catabolic process to carboxylic acid via Ehrlich pathway
Description: The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched chain family amino acid, leucine, isoleucine, or valine, is used as the substrate, 3-methylbutanoate, 2-methylbutanoate, or 2-methylpropanoate, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids.
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GO Term
GO:0000954 | methionine catabolic process to 3-methylthiopropanoate
Description: The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When methionine is used as the substrate, 3-methylthiopropanoate is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids.
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GO Term
GO:0000957 | mitochondrial RNA catabolic process
Description: The chemical reactions and pathways resulting in the breakdown of RNA transcribed from the mitochondrial genome and occurring in the mitochondrion.
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GO Term
GO:0000958 | mitochondrial mRNA catabolic process
Description: The chemical reactions and pathways resulting in the breakdown of mRNA transcribed from the mitochondrial genome and occurring in the mitochondrion.
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GO Term
GO:0000960 | regulation of mitochondrial RNA catabolic process
Description: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome.
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GO Term
GO:0000961 | negative regulation of mitochondrial RNA catabolic process
Description: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome.
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GO Term
GO:0000962 | positive regulation of mitochondrial RNA catabolic process
Description: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome.
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GO Term
GO:0000964 | mitochondrial RNA 5'-end processing
Description: Any process involved in forming the mature 5' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.
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GO Term
GO:0000965 | mitochondrial RNA 3'-end processing
Description: Any process involved in forming the mature 3' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.
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GO Term
GO:0000968 | tRNA exon ligation
Description: An RNA exon ligation process that rejoins two exons of a pre-tRNA which has had the intron removed.
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GO Term
GO:0000969 | tRNA exon ligation utilizing ATP as source of linkage phosphate
Description: A tRNA exon ligation process in which the splice junction phosphate is derived from exogenous ATP. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in vertebrate species.
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GO Term
GO:0000970 | tRNA exon ligation utilizing GTP as source of linkage phosphate
Description: A tRNA exon ligation process in which the splice junction phosphate is derived from exogenous GTP. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in the yeast Saccharomyces cerevisiae where the ligation reaction also produces a 2'-phosphate at the splice junction which is subsequently removed as part of the ligation process.
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GO Term
GO:0000971 | tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate
Description: A tRNA exon ligation process in which the splice junction phosphate is derived from the 2',3' cyclic phosphate at the 3'-end of the 5'-exon. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in wheat, Chlamydomonas, and vertebrate species including humans.
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GO Term
GO:0000973 | posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
Description: The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery even after transcription has been repressed.
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GO Term
GO:0044212 | transcription regulatory region DNA binding
Description: Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
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GO Term
GO:0001012 | RNA polymerase II regulatory region DNA binding
Description: Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by RNA polymerase II. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
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GO Term
GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene.
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GO Term
GO:0001046 | core promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.
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GO Term
GO:0001047 | core promoter binding
Description: Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for the basal transcription machinery. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
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GO Term
GO:0001158 | enhancer sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a specific sequence of DNA that is part of an enhancer, a transcription regulatory region that is somewhat distal from the core promoter and which enhances transcription from that promoter.
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GO Term
GO:0000980 | RNA polymerase II distal enhancer sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a RNA polymerase II (Pol II) distal enhancer. In mammalian cells, enhancers are distal sequences that increase the utilization of some promoters, and can function in either orientation and in any location (upstream or downstream) relative to the core promoter.
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GO Term
GO:0035326 | enhancer binding
Description: Interacting selectively and non-covalently with an enhancer, a transcription regulatory region that is somewhat distal from the core promoter and which enhances transcription from that promoter.
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GO Term
GO:0000984 | bacterial-type RNA polymerase regulatory region sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls the transcription of a gene or operon by a bacterial-type RNA polymerase.
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USDA
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The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
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