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Search results 1801 to 1900 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0001879 | feature_ablation
Description: A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features.
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SO Term
SO:0001880 | feature_amplification
Description: A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features.
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SO Term
SO:0001881 | feature_translocation
Description: A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features.
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SO Term
SO:0001883 | transcript_translocation
Description: A feature translocation where the region contains a transcript.
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SO Term
SO:0001884 | regulatory_region_translocation
Description: A feature translocation where the region contains a regulatory region.
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SO Term
SO:0001885 | TFBS_translocation
Description: A feature translocation where the region contains a transcription factor binding site.
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SO Term
SO:0001886 | transcript_fusion
Description: A feature fusion where the deletion brings together transcript regions.
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SO Term
SO:0001887 | regulatory_region_fusion
Description: A feature fusion where the deletion brings together regulatory regions.
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SO Term
SO:0001888 | TFBS_fusion
Description: A fusion where the deletion brings together transcription factor binding sites.
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SO Term
SO:0001889 | transcript_amplification
Description: A feature amplification of a region containing a transcript.
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SO Term
SO:0001890 | transcript_regulatory_region_fusion
Description: A feature fusion where the deletion brings together a regulatory region and a transcript region.
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SO Term
SO:0001891 | regulatory_region_amplification
Description: A feature amplification of a region containing a regulatory region.
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SO Term
SO:0001892 | TFBS_amplification
Description: A feature amplification of a region containing a transcription factor binding site.
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SO Term
SO:0001893 | transcript_ablation
Description: A feature ablation whereby the deleted region includes a transcript feature.
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SO Term
SO:0001894 | regulatory_region_ablation
Description: A feature ablation whereby the deleted region includes a regulatory region.
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SO Term
SO:0001895 | TFBS_ablation
Description: A feature ablation whereby the deleted region includes a transcription factor binding site.
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SO Term
SO:0001896 | transposable_element_CDS
Description: A CDS that is part of a transposable element.
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SO Term
SO:0001897 | transposable_element_pseudogene
Description: A pseudogene contained within a transposable element.
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SO Term
SO:0001898 | dg_repeat
Description: A repeat region which is part of the regional centromere outer repeat region.
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SO Term
SO:0001899 | dh_repeat
Description: A repeat region which is part of the regional centromere outer repeat region.
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SO Term
SO:0001901 | AACCCT_box
Description: A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site.
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SO Term
SO:0001902 | splice_region
Description: A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron.
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SO Term
SO:0001904 | antisense_lncRNA
Description: Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA.
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SO Term
SO:0001905 | regional_centromere_outer_repeat_transcript
Description: A transcript that is transcribed from the outer repeat region of a regional centromere.
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SO Term
SO:0001909 | frameshift_elongation
Description: A frameshift variant that causes the translational reading frame to be extended relative to the reference feature.
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SO Term
SO:0001910 | frameshift_truncation
Description: A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature.
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SO Term
SO:0001911 | copy_number_increase
Description: A sequence variant where copies of a feature are increased relative to the reference.
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SO Term
SO:0001912 | copy_number_decrease
Description: A sequence variant where copies of a feature are decreased relative to the reference.
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SO Term
SO:0001914 | rDNA_replication_fork_barrier
Description: A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing.
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SO Term
SO:0001915 | transcription_start_cluster
Description: A region defined by a cluster of experimentally determined transcription starting sites.
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SO Term
SO:0001916 | CAGE_tag
Description: A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites.
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SO Term
SO:0001917 | CAGE_cluster
Description: A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region.
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SO Term
SO:0001918 | 5_methylcytosine
Description: A cytosine methylated at the 5 carbon.
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SO Term
SO:0001919 | 4_methylcytosine
Description: A cytosine methylated at the 4 nitrogen.
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SO Term
SO:0001920 | N6_methyladenine
Description: An adenine methylated at the 6 nitrogen.
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SO Term
SO:0001921 | mitochondrial_contig
Description: A contig of mitochondria derived sequences.
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SO Term
SO:0001922 | mitochondrial_supercontig
Description: A scaffold composed of mitochondrial contigs.
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SO Term
SO:0001927 | telomeric_transcript
Description: A non-coding transcript derived from the transcript of the telomere.
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SO Term
SO:0001923 | TERRA
Description: A non-coding RNA transcript, derived from the transcription of the telomere. These transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long.
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SO Term
SO:0001924 | ARRET
Description: A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats.
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SO Term
SO:0001925 | ARIA
Description: A non-coding RNA transcript, derived from the transcription of the telomere. These transcripts consist of C rich repeats.
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SO Term
SO:0001926 | anti_ARRET
Description: A non-coding RNA transcript, derived from the transcription of the telomere. These transcripts are antisense of ARRET transcripts.
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SO Term
SO:0001928 | distal_duplication
Description: A duplication of the distal region of a chromosome.
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SO Term
SO:0001929 | mitochondrial_DNA_read
Description: A sequencer read of a mitochondrial DNA sample.
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SO Term
SO:0001930 | chloroplast_DNA_read
Description: A sequencer read of a chloroplast DNA sample.
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SO Term
SO:0001931 | consensus_gDNA
Description: Genomic DNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple gDNA sequences as input.
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SO Term
SO:0001932 | restriction_enzyme_five_prime_single_strand_overhang
Description: A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end.
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SO Term
SO:0001933 | restriction_enzyme_three_prime_single_strand_overhang
Description: A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end.
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SO Term
SO:0001934 | monomeric_repeat
Description: A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem.
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SO Term
SO:0001935 | H3K20_trimethylation_site
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated.
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SO Term
SO:0001936 | H3K36_acetylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0002143 | histone_2B_acetylation_site
Description: A histone 2B modification where the modification is the acetylation of the residue.
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SO Term
SO:0001937 | H2BK12_acetylation_site
Description: A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated.
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SO Term
SO:0002142 | histone_2A_acetylation_site
Description: A histone 2A modification where the modification is the acetylation of the residue.
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SO Term
SO:0001938 | H2AK5_acetylation_site
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated.
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SO Term
SO:0001939 | H4K12_acetylation_site
Description: A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001940 | H2BK120_acetylation_site
Description: A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated.
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SO Term
SO:0001941 | H4K91_acetylation_site
Description: A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO:0001942 | H2BK20_acetylation_site
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated.
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SO Term
SO:0001943 | H3K4_acetylation_site
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001944 | H2AK9_acetylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated.
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SO Term
SO:0001945 | H3K56_acetylation_site
Description: A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001946 | H2BK15_acetylation_site
Description: A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated.
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SO Term
SO:0001947 | H3R2_monomethylation_site
Description: A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated.
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SO Term
SO:0001948 | H3R2_dimethylation_site
Description: A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated.
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SO Term
SO:0001949 | H4R3_dimethylation_site
Description: A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated.
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SO Term
SO:0001950 | H4K4_trimethylation_site
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated.
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SO Term
SO:0001951 | H3K23_dimethylation_site
Description: A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated.
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SO Term
SO:0001952 | promoter_flanking_region
Description: A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites.
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SO Term
SO:0001953 | restriction_enzyme_assembly_scar
Description: A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends.
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SO Term
SO:0001955 | protein_stability_element
Description: A polypeptide region that proves structure in a protein that affects the stability of the protein.
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SO Term
SO:0001956 | protease_site
Description: A polypeptide_region that codes for a protease cleavage site.
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SO Term
SO:0001958 | lariat_intron
Description: A kind of intron whereby the excision is driven by lariat formation.
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SO Term
SO:0001959 | TCT_motif
Description: A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator.
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SO Term
SO:0001960 | 5_hydroxymethylcytosine
Description: A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon.
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SO Term
SO:0001961 | 5_formylcytosine
Description: A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon.
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SO Term
SO:0001964 | modified_guanine
Description: A modified guanine DNA base feature.
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SO Term
SO:0001965 | 8_oxoguanine
Description: A modified DNA guanine base,at the 8 carbon, often the product of DNA damage.
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SO Term
SO:0001966 | 5_carboxylcytosine
Description: A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon.
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SO Term
SO:0001967 | 8_oxoadenine
Description: A modified DNA adenine base,at the 8 carbon, often the product of DNA damage.
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SO Term
SO:0001969 | coding_transcript_intron_variant
Description: A transcript variant occurring within an intron of a coding transcript.
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SO Term
SO:0001970 | non_coding_transcript_intron_variant
Description: A transcript variant occurring within an intron of a non coding transcript.
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SO Term
SO:0001971 | zinc_finger_binding_site
Description: A binding site to which a polypeptide will bind with a zinc finger motif, which is characterized by requiring one or more Zinc 2+ ions for stabilized folding.
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SO Term
SO:0001974 | CTCF_binding_site
Description: A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor.
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SO Term
SO:0001975 | five_prime_sticky_end_restriction_enzyme_cleavage_site
Description: A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs.
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SO Term
SO:0001976 | three_prime_sticky_end_restriction_enzyme_cleavage_site
Description: A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs.
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SO Term
SO:0001977 | ribonuclease_site
Description: A region of a transcript encoding the cleavage site for a ribonuclease enzyme.
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SO Term
SO:0001978 | signature
Description: A region of sequence where developer information is encoded.
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SO Term
SO:0001979 | RNA_stability_element
Description: A motif that affects the stability of RNA.
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SO Term
SO:0001980 | G_box
Description: A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a.
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SO Term
SO:0001981 | L_box
Description: An orientation dependent regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants.
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SO:0001982 | I-box
Description: A plant regulatory promoter motif, composed of a highly conserved hexamer GATAAG (I-box core).
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SO Term
SO:0001983 | 5_prime_UTR_premature_start_codon_variant
Description: A 5' UTR variant where a premature start codon is introduced, moved or lost.
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SO Term
SO:0005854 | gene_cassette_array
Description: An array of non-functional genes whose members, when captured by recombination form functional genes.
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SO Term
SO:0001984 | silent_mating_type_cassette_array
Description: A gene cassette array that corresponds to a silenced version of a mating type region.
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SO:0005853 | gene_cassette
Description: A gene that can be substituted for a related gene at a different site in the genome.
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SO Term
SO:0001985 | Okazaki_fragment
Description: Any of the DNA segments produced by discontinuous synthesis of the lagging strand during DNA replication.
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SO Term
SO:0001986 | upstream_transcript_variant
Description: A feature variant, where the alteration occurs upstream of the transcript TSS.
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SO Term
SO:0001987 | downstream_transcript_variant
Description: A feature variant, where the alteration occurs downstream of the transcript termination site.
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SO Term
SO:0001988 | 5_prime_UTR_premature_start_codon_gain_variant
Description: A 5' UTR variant where a premature start codon is gained.
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