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Search results 4101 to 4200 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR22889 | UNCHARACTERIZED
 
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Ontology Term
PANTHER:PTHR22889:SF0 | WD REPEAT-CONTAINING PROTEIN 89
 
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Ontology Term
PANTHER:PTHR22932 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE
 
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Ontology Term
PANTHER:PTHR22932:SF1 | CO-CHAPERONE PROTEIN DAF-41
 
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Ontology Term
PANTHER:PTHR23041 | RING FINGER DOMAIN-CONTAINING
 
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Ontology Term
PANTHER:PTHR23041:SF50 | E3 UBIQUITIN-PROTEIN LIGASE BAH1
 
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Ontology Term
PANTHER:PTHR15224 | NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5
 
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Ontology Term
PANTHER:PTHR15224:SF1 | NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5
 
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Ontology Term
Pfam:PF10200 | NADH:ubiquinone oxidoreductase, NDUFS5-15kDa
Description: This is a family of short, approximately 105 amino acid residue, proteins which form part of NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The protein carries four highly conserved cysteine residues but these do not appear to be in a configuration which would favour metal binding so the exact function of the protein is uncertain [1].
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Ontology Term
Pfam:PF04072 | Leucine carboxyl methyltransferase
Description: Family of leucine carboxyl methyltransferases EC:2.1.1.- . This family may need divides a the full alignment contains a significantly shorter mouse sequence.
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Ontology Term
PANTHER:PTHR14150 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14
 
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Ontology Term
PANTHER:PTHR14150:SF12 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG A-RELATED
 
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Ontology Term
Pfam:PF04615 | Utp14 protein
Description: This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA [1]. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome [1].
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Ontology Term
PANTHER:PTHR13793 | PHD FINGER PROTEINS
 
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Ontology Term
PANTHER:PTHR13793:SF5 | HISTONE-LYSINE N-METHYLTRANSFERASE ATX3-RELATED
 
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Ontology Term
Pfam:PF13832 | PHD-zinc-finger like domain
Description: NULL
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Ontology Term
PANTHER:PTHR21262:SF0 | GTP DIPHOSPHOKINASE RSH3, CHLOROPLASTIC-RELATED
 
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Ontology Term
Pfam:PF02824 | TGS domain
Description: The TGS domain is named after ThrRS, GTPase, and SpoT [1]. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role [1].
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Ontology Term
PANTHER:PTHR24089:SF133 | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED
 
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Ontology Term
Pfam:PF08292 | RNA polymerase III subunit Rpc25
Description: Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [1].
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Ontology Term
PANTHER:PTHR22904:SF7 | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
Pfam:PF01624 | MutS domain I
Description: This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4].
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Ontology Term
Pfam:PF05188 | MutS domain II
Description: This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF01624, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. This domain corresponds to domain II in Thermus aquaticus MutS as characterised in [4], and has similarity resembles RNAse-H-like domains (see Pfam:PF00075).
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Ontology Term
Pfam:PF05190 | MutS family domain IV
Description: This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF00488. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds in part with globular domain IV, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4].
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Ontology Term
Pfam:PF05192 | MutS domain III
Description: This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [4].
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Ontology Term
PANTHER:PTHR11731 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
 
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Ontology Term
PANTHER:PTHR11731:SF5 | GLUTAMYL ENDOPEPTIDASE, CHLOROPLASTIC-RELATED
 
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Ontology Term
Pfam:PF00326 | Prolyl oligopeptidase family
Description: NULL
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Ontology Term
PANTHER:PTHR21561 | INO80 COMPLEX SUBUNIT B
 
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Ontology Term
Pfam:PF04438 | HIT zinc finger
Description: This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein Swiss:P46973. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) Swiss:Q15649 that specifically interact with the ligand binding domain of the thyroid receptor.
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Ontology Term
Pfam:PF04795 | PAPA-1-like conserved region
Description: Family of proteins with a conserved region found in PAPA-1, a PAP-1 binding protein.
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Ontology Term
PANTHER:PTHR24031:SF125 | ATP-DEPENDENT RNA HELICASE DDX42
 
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Ontology Term
PANTHER:PTHR23303 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING
 
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Ontology Term
Pfam:PF05738 | Cna protein B-type domain
Description: This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved [1] and forms a beta sandwich structure.
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Ontology Term
Pfam:PF13620 | Carboxypeptidase regulatory-like domain
Description: NULL
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Ontology Term
Pfam:PF00397 | WW domain
Description: The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.
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Ontology Term
PANTHER:PTHR12855 | DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR30115 | NITROGEN REGULATORY PROTEIN P-II
 
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Ontology Term
Pfam:PF00543 | Nitrogen regulatory protein P-II
Description: P-II modulates the activity of glutamine synthetase.
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Ontology Term
Pfam:PF06108 | Protein of unknown function (DUF952)
Description: This family consists of several hypothetical bacterial and plant proteins of unknown function.
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Ontology Term
PANTHER:PTHR11655 | 60S/50S RIBOSOMAL PROTEIN L6/L9
 
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Ontology Term
Pfam:PF00347 | Ribosomal protein L6
Description: NULL
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Ontology Term
PANTHER:PTHR22938 | ZINC FINGER PROTEIN 598
 
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Ontology Term
PANTHER:PTHR14344 | WD REPEAT PROTEIN
 
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Ontology Term
Pfam:PF02773 | S-adenosylmethionine synthetase, C-terminal domain
Description: The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold.
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Ontology Term
PANTHER:PTHR11075:SF9 | PEPTIDE CHAIN RELEASE FACTOR 1, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR24222 | ABC TRANSPORTER B FAMILY
 
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Ontology Term
PANTHER:PTHR11451 | THREONINE-TRNA LIGASE
 
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Ontology Term
PANTHER:PTHR11451:SF6 | SUBFAMILY NOT NAMED
 
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Ontology Term
Pfam:PF00587 | tRNA synthetase class II core domain (G, H, P, S and T)
Description: tRNA-synt_2b is a family of largely threonyl-tRNA members.
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Ontology Term
Pfam:PF09180 | Prolyl-tRNA synthetase, C-terminal
Description: Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif [1].
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Ontology Term
PANTHER:PTHR22761 | CHARGED MULTIVESICULAR BODY PROTEIN
 
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Ontology Term
PANTHER:PTHR22572:SF10 | GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 2, CHLOROPLASTIC-RELATED
 
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Ontology Term
Pfam:PF14566 | Inositol hexakisphosphate
Description: Inositol hexakisphosphate, often called phytate, is found in abundance in seeds and acting as an inorganic phosphate reservoir. Phytases are phosphatases that hydrolyze phytate to less-phosphorylated myo-inositol derivatives and inorganic phosphate. The active-site sequence (HCXXGXGR) of the phytase identified from the gut micro-organism Selenomonas ruminantium forms a loop (P loop) at the base of a substrate binding pocket that is characteristic of protein tyrosine phosphatases (PTPs). The depth of this pocket is an important determinant of the substrate specificity of PTPs. In humans this enzyme is thought to aid bone mineralization and salvage the inositol moiety prior to apoptosis [3].
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Ontology Term
PANTHER:PTHR12411:SF16 | CATHEPSIN B
 
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Ontology Term
Pfam:PF08127 | Peptidase family C1 propeptide
Description: This motif is found at the N terminal of some members of the Peptidase_C1 family (Pfam:PF00112) and is involved in activation of this peptidase [1].
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Ontology Term
Pfam:PF08152 | GUCT (NUC152) domain
Description: This is the C terminal domain found in the RNA helicase II / Gu protein family [1].
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Ontology Term
PANTHER:PTHR23115:SF41 | PROTEIN F46B6.6, ISOFORM A
 
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Ontology Term
Pfam:PF11987 | Translation-initiation factor 2
Description: IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyses the hydrolysis of GTP following initiation-complex formation [2].
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Ontology Term
PANTHER:PTHR17614 | ZINC FINGER-CONTAINING
 
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Ontology Term
Pfam:PF01585 | G-patch domain
Description: This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.
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Ontology Term
Pfam:PF12171 | Zinc-finger double-stranded RNA-binding
Description: This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation.
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Ontology Term
PANTHER:PTHR14379:SF3 | MEIOSIS REGULATOR AND MRNA STABILITY FACTOR 1
 
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Ontology Term
Pfam:PF12330 | Haspin like kinase domain
Description: This family represents the haspin-like kinase domains.
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Ontology Term
PANTHER:PTHR24057 | GLYCOGEN SYNTHASE KINASE-3 ALPHA
 
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Ontology Term
PANTHER:PTHR23429 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD
 
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Ontology Term
Pfam:PF00479 | Glucose-6-phosphate dehydrogenase, NAD binding domain
Description: NULL
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Ontology Term
Pfam:PF02781 | Glucose-6-phosphate dehydrogenase, C-terminal domain
Description: NULL
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Ontology Term
PANTHER:PTHR11998:SF4 | CARMINE
 
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Ontology Term
PANTHER:PTHR31916 | FAMILY NOT NAMED
 
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Ontology Term
Pfam:PF12899 | Alkaline and neutral invertase
Description: This is a family of bacterial and plant alkaline and neutral invertases, EC:3.2.1.26, previously known as Invertase_neut Pfam:PF04853.
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Ontology Term
PANTHER:PTHR32116:SF7 | GALACTURONOSYLTRANSFERASE 4-RELATED
 
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Ontology Term
PANTHER:PTHR10468 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE
 
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Ontology Term
Pfam:PF03071 | GNT-I family
Description: Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) EC:2.4.1.101 transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localised to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C-terminus [1].
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Ontology Term
Pfam:PF00187 | Chitin recognition protein
Description: NULL
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Ontology Term
PANTHER:PTHR11777 | ALANYL-TRNA SYNTHETASE
 
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Ontology Term
Pfam:PF01411 | tRNA synthetases class II (A)
Description: Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only alanyl-tRNA synthetases.
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Ontology Term
Pfam:PF07973 | Threonyl and Alanyl tRNA synthetase second additional domain
Description: The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [1].
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Ontology Term
PANTHER:PTHR21680 | UNCHARACTERIZED
 
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Ontology Term
PANTHER:PTHR21680:SF0 | COILED-COIL DOMAIN-CONTAINING PROTEIN 124
 
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Ontology Term
Pfam:PF06244 | Coiled-coil domain-containing protein 124 /Oxs1
Description: Oxs1 (oxidative stress transcription corepressor Oxs1) and Pap1 form a complex to regulate transcription when cells are exposed to diamide or Cd that causes disulfide stress. In fission yeast such as S. pombe, heterologous Oxs1-like proteins can enhance diamide stress tolerance. Furthermore, human and arabidopsis Oxs1 can interchangeably bind Pap1 or Pap1 homologues from human (cJun) and arabidopsis (bZIP10), suggesting that Oxs1 may be a component of an evolutionarily-conserved stress response pathway [1]. Family members found in human such as Ccdc124 (Coiled-Coil Domain Containing Protein 124), were identified as a novel component of the centrosome during interphase and G2/M transition and is involved in cytokinesis [1, 2].
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Ontology Term
Pfam:PF07819 | PGAP1-like protein
Description: The sequences found in this family are similar to PGAP1 (Swiss:Q765A7). This is an endoplasmic reticulum membrane protein with a catalytic serine containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [1]. This entry also includes Tgl2, a mitochondria protein that serves as a triacylglycerol lipase in budding yeasts [2].
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Ontology Term
PANTHER:PTHR11229 | 50S RIBOSOMAL PROTEIN L3
 
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Ontology Term
Pfam:PF00297 | Ribosomal protein L3
Description: NULL
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Ontology Term
PANTHER:PTHR12040 | ANTI-SILENCING PROTEIN 1
 
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Ontology Term
Pfam:PF04729 | ASF1 like histone chaperone
Description: This family includes the yeast and human ASF1 protein. These proteins have histone chaperone activity [1]. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [2].
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Ontology Term
PANTHER:PTHR24031:SF35 | ATP-DEPENDENT RNA HELICASE DDX28-RELATED
 
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Ontology Term
PANTHER:PTHR31742 | RPA-INTERACTING PROTEIN RPAIN
 
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Ontology Term
PANTHER:PTHR31742:SF1 | RPA-INTERACTING PROTEIN
 
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Ontology Term
Pfam:PF14767 | Replication protein A interacting middle
Description: This family of proteins represents the middle domain of replication protein A (RPA) interacting protein. RPA interacting protein is involved in the import of RPA into the nucleus. This domain is responsible for interaction with RPA [1-2].
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Ontology Term
Pfam:PF14768 | Replication protein A interacting C-terminal
Description: This family of proteins represents the C-terminal domain of replication protein A (RPA) interacting protein. RPA interacting protein is involved in the import of RPA into the nucleus. The C-terminal domain is a putative zinc finger [1-2].
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Ontology Term
PANTHER:PTHR11986:SF5 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
 
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Ontology Term
PANTHER:PTHR12596:SF2 | EXPORTIN 7
 
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Ontology Term
PANTHER:PTHR21704 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED
 
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Ontology Term
Pfam:PF05278 | Arabidopsis phospholipase-like protein (PEARLI 4)
Description: This family contains several phospholipase-like proteins from Arabidopsis thaliana which are homologous to PEARLI 4.
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Ontology Term
Pfam:PF03824 | High-affinity nickel-transport protein
Description: High affinity nickel transporters involved in the incorporation of nickel into H2-uptake hydrogenase [2] and urease [3] enzymes. Essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Alcaligenes eutrophus is thought to be an integral membrane protein with seven transmembrane helices [4]. The family also includes a cobalt transporter.
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Ontology Term
PANTHER:PTHR22814:SF14 | ATFP6-LIKE PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR13454 | PROTEIN MCM10 HOMOLOG
 
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Ontology Term
Pfam:PF09329 | Primase zinc finger
Description: This zinc finger is found in yeast Mcm10 proteins and DnaG-type primases [1].
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Ontology Term
Pfam:PF13364 | Beta-galactosidase jelly roll domain
Description: This domain is found in beta galactosidase enzymes. It has a jelly roll fold [1].
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