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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR18860 | 14-3-3 PROTEIN
 
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Ontology Term
PANTHER:PTHR12902:SF1 | WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR31645 | OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED
 
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Ontology Term
PANTHER:PTHR31645:SF0 | OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED
 
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Ontology Term
Pfam:PF03169 | OPT oligopeptide transporter protein
Description: The OPT family of oligopeptide transporters is distinct from the ABC Pfam:PF00005 and PTR Pfam:PF00854 transporter families. OPT transporters were first recognised in fungi (Candida albicans and Schizosaccharomyces pombe), but this alignment also includes orthologues from Arabidopsis thaliana. OPT transporters are thought to have 12-14 transmembrane domains and contain the following motif: SPYxEVRxxVxxxDDP [1].
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Ontology Term
PANTHER:PTHR31314:SF1 | OS05G0491500 PROTEIN
 
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Ontology Term
Pfam:PF05097 | Protein of unknown function (DUF688)
Description: This family contains several uncharacterised proteins found in Arabidopsis thaliana.
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Ontology Term
PANTHER:PTHR24015:SF105 | SUBFAMILY NOT NAMED
 
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Ontology Term
Pfam:PF03004 | Plant transposase (Ptta/En/Spm family)
Description: Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.
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Ontology Term
Pfam:PF02620 | Large ribosomal RNA subunit accumulation protein YceD
Description: This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria [1].
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Ontology Term
PANTHER:PTHR13194 | COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30
 
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Ontology Term
PANTHER:PTHR13194:SF7 | ROSSMANN-FOLD NAD(P)-BINDING DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
Pfam:PF08547 | Complex I intermediate-associated protein 30 (CIA30)
Description: This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation [1][2].
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Ontology Term
PANTHER:PTHR32077 | FASCICLIN-LIKE ARABINOGALACTAN PROTEIN
 
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Ontology Term
PANTHER:PTHR21212 | BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN
 
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Ontology Term
PANTHER:PTHR21212:SF0 | SEIPIN
 
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Ontology Term
Pfam:PF06775 | Putative adipose-regulatory protein (Seipin)
Description: Seipin is a protein of approximately 400 residues, in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in human, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [1].
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Ontology Term
PANTHER:PTHR11566:SF21 | DYNAMIN-1-LIKE PROTEIN
 
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Ontology Term
PANTHER:PTHR11654:SF21 | OS12G0231000 PROTEIN
 
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Ontology Term
Pfam:PF07823 | Cyclic phosphodiesterase-like protein
Description: Cyclic phosphodiesterase (CPDase, Swiss:O04147) is involved in the tRNA splicing pathway. This protein exhibits a bilobal arrangement of two alpha-beta modules. Two antiparallel helices are found on the outer side of each lobe and frame an antiparallel beta-sheet that is wrapped around an accessible cleft. Moreover, the beta-strands of each lobe interact with the other lobe. The central water-filled cavity houses the enzyme's active site [1].
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Ontology Term
PANTHER:PTHR10830 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT
 
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Ontology Term
Pfam:PF03345 | Oligosaccharyltransferase 48 kDa subunit beta
Description: Members of this family are involved in asparagine-linked protein glycosylation. In particular, dolichyl-diphosphooligosaccharide-protein glycosyltransferase (DDOST), also known as oligosaccharyltransferase EC:2.4.1.119, transfers the high-mannose sugar GlcNAc(2)-Man(9)-Glc(3) from a dolichol-linked donor to an asparagine acceptor in a consensus Asn-X-Ser/Thr motif. In most eukaryotes, the DDOST complex is composed of three subunits, which in humans are described as a 48kD subunit, ribophorin I, and ribophorin II. However, the yeast DDOST appears to consist of six subunits (alpha, beta, gamma, delta, epsilon, zeta). The yeast beta subunit is a 45kD polypeptide, previously discovered as the Wbp1 protein, with known sequence similarity to the human 48kD subunit and the other orthologues. This family includes the 48kD-like subunits from several eukaryotes; it also includes the yeast DDOST beta subunit Wbp1.
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Ontology Term
PANTHER:PTHR12436 | 80 KDA MCM3-ASSOCIATED PROTEIN
 
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Ontology Term
PANTHER:PTHR12436:SF4 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 8
 
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Ontology Term
PANTHER:PTHR11081 | FLAP ENDONUCLEASE FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR11081:SF8 | EXONUCLEASE 1
 
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Ontology Term
Pfam:PF00752 | XPG N-terminal domain
Description: NULL
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Ontology Term
Pfam:PF00867 | XPG I-region
Description: NULL
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Ontology Term
PANTHER:PTHR23115 | TRANSLATION FACTOR
 
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Ontology Term
PANTHER:PTHR23115:SF38 | HBS1-LIKE PROTEIN
 
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Ontology Term
Pfam:PF00009 | Elongation factor Tu GTP binding domain
Description: This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
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Ontology Term
Pfam:PF03143 | Elongation factor Tu C-terminal domain
Description: Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2].
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Ontology Term
Pfam:PF03144 | Elongation factor Tu domain 2
Description: Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
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Ontology Term
Pfam:PF14604 | Variant SH3 domain
Description: NULL
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Ontology Term
Pfam:PF05512 | AWPM-19-like family
Description: Members of this family are 19 kDa membrane proteins. The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing [1].
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Ontology Term
Pfam:PF05562 | Cold acclimation protein WCOR413
Description: This family consists of several WCOR413-like plant cold acclimation proteins.
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Ontology Term
PANTHER:PTHR32060 | TAIL-SPECIFIC PROTEASE
 
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Ontology Term
PANTHER:PTHR32060:SF0 | TAIL-SPECIFIC PROTEASE
 
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Ontology Term
Pfam:PF03572 | Peptidase family S41
Description: NULL
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Ontology Term
PANTHER:PTHR12758 | APOPTOSIS INHIBITOR 5-RELATED
 
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Ontology Term
PANTHER:PTHR12758:SF13 | SUBFAMILY NOT NAMED
 
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Ontology Term
Pfam:PF06972 | GBF-interacting protein 1 N-terminal
Description: This entry represents the N-terminal domain of GBF1-interacting protein 1 (GIP1, AT3G13222) from Arabidopsis. GIP1 may act as a coactivator that regulates transcription factors involved in lateral organ development of plants, such as bZIP transcription factors and LBD18 [1,2].
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Ontology Term
Pfam:PF01412 | Putative GTPase activating protein for Arf
Description: Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
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Ontology Term
PANTHER:PTHR10903 | GTPASE, IMAP FAMILY MEMBER-RELATED
 
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Ontology Term
Pfam:PF04548 | AIG1 family
Description: Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
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Ontology Term
Pfam:PF11886 | Translocase of chloroplast 159/132, membrane anchor domain
Description: This is the membrane-anchor domain of translocase of chloroplast 159, TOC159/132. This domain is present in plants at the C-terminus of the GTPase, AIG1, Pfam:PF04548, and anchors the GTPas region to the outer membrane of the chloroplast. The domain may carry a very C-terminal sequence motif that resembles a transit peptide [1].
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Ontology Term
Pfam:PF08670 | MEKHLA domain
Description: The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
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Ontology Term
PANTHER:PTHR12357 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
 
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Ontology Term
Pfam:PF04146 | YT521-B-like domain
Description: A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells [3]. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein Swiss:Q9QY02 YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner [1]. The YTH domain has been identified as part of the PUA superfamily [4].
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Ontology Term
PANTHER:PTHR17130 | MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25
 
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Ontology Term
PANTHER:PTHR10183 | CALPAIN
 
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Ontology Term
PANTHER:PTHR23257:SF80 | PAS DOMAIN-CONTAINING PROTEIN TYROSINE KINASE FAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR14003 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY
 
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Ontology Term
PANTHER:PTHR14003:SF1 | GENE 12845-RELATED
 
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Ontology Term
Pfam:PF13465 | Zinc-finger double domain
Description: NULL
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Ontology Term
Pfam:PF13894 | C2H2-type zinc finger
Description: This family contains a number of divergent C2H2 type zinc fingers.
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Ontology Term
PANTHER:PTHR21650:SF2 | KINETOCHORE PROTEIN NUF2
 
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Ontology Term
Pfam:PF03800 | Nuf2 family
Description: Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex [1]. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Swiss:Q9C953. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.
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Ontology Term
PANTHER:PTHR22959 | PYM PROTEIN
 
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Ontology Term
PANTHER:PTHR22959:SF0 | PARTNER OF Y14 AND MAGO
 
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Ontology Term
Pfam:PF09282 | Mago binding
Description: Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions [1].
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Ontology Term
PANTHER:PTHR10366:SF186 | UDP-ARABINOSE 4-EPIMERASE 1-RELATED
 
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Ontology Term
PANTHER:PTHR22848 | WD40 REPEAT PROTEIN
 
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Ontology Term
PANTHER:PTHR22848:SF0 | WD40 REPEAT-CONTAINING PROTEIN SMU1
 
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Ontology Term
Pfam:PF05964 | F/Y-rich N-terminus
Description: This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.
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Ontology Term
Pfam:PF05965 | F/Y rich C-terminus
Description: This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00542.
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Ontology Term
PANTHER:PTHR11615 | NITRATE, FORMATE, IRON DEHYDROGENASE
 
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Ontology Term
PANTHER:PTHR10644 | DNA REPAIR/RNA PROCESSING CPSF FAMILY
 
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Ontology Term
PANTHER:PTHR10644:SF3 | DNA DAMAGE-BINDING PROTEIN 1
 
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Ontology Term
Pfam:PF03178 | CPSF A subunit region
Description: This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs [1]. The function of the aligned region is unknown but may be involved in RNA/DNA binding.
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Ontology Term
Pfam:PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term
Description: MMS1 is a protein that protects against replication-dependent DNA damage in Saccharomyces cerevisiae [1]. MMS1 belongs to the DDB1 family of cullin 4 adaptors and the two proteins are homologous. MMS1 bridges the interaction of MMS22 and Crt10 with Cul8/Rtt101 [2]. Cul8/Rtt101 is a cullin protein involved in the regulation of DNA replication subsequent to DNA damage. The N-terminal region of MMS1 and the C-terminal of MMS22 are required for the the MMS1-MMS22 interaction [3]. The human HIV-1 virion-associated protein Vpr assembles with DDB1 through interaction with DCAF1 (chromatin assembly factor) to form an E3 ubiquitin ligase that targets cellular substrates for proteasome-mediated degradation and subsequent G2 arrest [4].
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Ontology Term
Pfam:PF10517 | Electron transfer DM13
Description: The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins [1]. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [1].
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Ontology Term
PANTHER:PTHR31279 | PROTEIN EXORDIUM-LIKE 5
 
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Ontology Term
PANTHER:PTHR13929 | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
 
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Ontology Term
PANTHER:PTHR13929:SF0 | UBIA PRENYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1
 
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Ontology Term
PANTHER:PTHR20961 | GLYCOSYLTRANSFERASE
 
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Ontology Term
Pfam:PF04577 | Glycosyltransferase 61
Description: This family represents the Glycosyltransferase Family 61. Members in this family are further processed into a mature form. It includes O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 (POMGnT2, also known as AGO61 or EOGLT) [1] and EGF domain-specific O-linked N-acetylglucosamine transferase (EOGT) [2]. This family also includes plant beta-1,2-xylosyltransferases [3].
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Ontology Term
PANTHER:PTHR11365 | 5-OXOPROLINASE RELATED
 
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Ontology Term
Pfam:PF01968 | Hydantoinase/oxoprolinase
Description: This family includes the enzymes hydantoinase and oxoprolinase EC:3.5.2.9. Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [1].
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Ontology Term
Pfam:PF02538 | Hydantoinase B/oxoprolinase
Description: This family includes N-methylhydaintoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase (Swiss:P97608) EC:3.5.2.9 which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to Pfam:PF01968.
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Ontology Term
Pfam:PF05378 | Hydantoinase/oxoprolinase N-terminal region
Description: This family is found at the N-terminus of the Pfam:PF01968 family.
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Ontology Term
PANTHER:PTHR17901 | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1
 
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Ontology Term
Pfam:PF12689 | Acid Phosphatase
Description: This family contains phosphatase enzymes and other proteins of the HAD superfamily. It includes MDP-1 which is a eukaryotic magnesium-dependent acid phosphatase [1-2].
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Ontology Term
Pfam:PF08507 | COPI associated protein
Description: Proteins in this family colocalise with COPI vesicle coat proteins [1].
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Ontology Term
PANTHER:PTHR23088 | NITRILASE-RELATED
 
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Ontology Term
Pfam:PF00795 | Carbon-nitrogen hydrolase
Description: This family contains hydrolases that break carbon-nitrogen bonds [1]. The family includes: Nitrilase EC:3.5.5.1 Swiss:Q42965, Aliphatic amidase EC:3.5.1.4 Swiss:Q01360, Biotidinase EC:3.5.1.12 Swiss:P43251, Beta-ureidopropionase EC:3.5.1.6 Swiss:Q03248. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins [2].
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Ontology Term
Pfam:PF12014 | Cyclin D1 binding domain
Description: Ubiquitin-dependent proteolysis of cyclin D1 is associated with normal and tumour cell proliferation and survival. The best characterised member of this family is the SCF FBXO31 (Skp1-Cul1-Rbx1-FBXO31) ubiquitin ligase complex mediates genotoxic stress-induced cyclin D1 degradation [1]. FBXO31 possesses a unique substrate-binding beta barrel domain, whereas cyclin D1 binds to FBXO31 by tucking its free C-terminal carboxylate tail into an open cavity of the C-terminal FBXO31 beta-barrel. Biophysical and functional studies demonstrated that SCFFBXO31 is capable of recruiting and ubiquitinating cyclin D1 in a phosphorylation-independent manner.
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Ontology Term
PANTHER:PTHR22739 | STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED
 
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Ontology Term
PANTHER:PTHR22739:SF0 | COSTARS FAMILY PROTEIN ABRACL
 
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Ontology Term
Pfam:PF14705 | Costars
Description: This domain is found both alone and at the C-terminus of actin-binding Rho-activating protein (ABRA). It binds to actin, and in muscle regulates the actin cytoskeleton and cell motility [1-2]. It has a winged helix-like fold consisting of three alpha-helices and four antiparallel beta strands. Unlike typical winged helix proteins it does not bind to DNA, but contains a hydrophobic groove which may be responsible for interaction with other proteins [3].
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Ontology Term
PANTHER:PTHR13523 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77
 
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Ontology Term
PANTHER:PTHR11699:SF27 | METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR31422 | BNAANNG28530D PROTEIN
 
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Ontology Term
PANTHER:PTHR31422:SF0 | MYOSIN-BINDING PROTEIN 7
 
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Ontology Term
PANTHER:PTHR22601 | ISP4 LIKE PROTEIN
 
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Ontology Term
Pfam:PF00745 | Glutamyl-tRNAGlu reductase, dimerisation domain
Description: NULL
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Ontology Term
Pfam:PF01488 | Shikimate / quinate 5-dehydrogenase
Description: This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
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Ontology Term
Pfam:PF05201 | Glutamyl-tRNAGlu reductase, N-terminal domain
Description: NULL
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Ontology Term
PANTHER:PTHR16254 | POTASSIUM/PROTON ANTIPORTER-RELATED
 
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Ontology Term
Pfam:PF02254 | TrkA-N domain
Description: This domain is found in a wide variety of proteins. These protein include potassium channels Swiss:P31069, phosphoesterases Swiss:Q59027, and various other transporters. This domain binds to NAD.
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