Search our database by keyword

- or -

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, pathways, authors, ontology terms, etc. (e.g. eve, embryo, zen, allele)
  • Use OR to search for either of two terms (e.g. fly OR drosophila) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. dros* for partial matches or fly AND NOT embryo to exclude a term

Search results 401 to 500 out of 2386 for *

Category restricted to SOTerm (x)

<< First    < Previous  |  Next >    Last >>
0.009s

Categories

Category: SOTerm
« show all
Type Details Score
SO Term
SO:0000283 | engineered_foreign_transposable_element_gene
Description: A transposable_element that is engineered and foreign.
•
•
•
•
•
SO Term
SO:0000286 | long_terminal_repeat
Description: A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses.
•
•
•
•
•
SO Term
SO:0000287 | fusion_gene
Description: A gene that is a fusion.
•
•
•
•
•
SO Term
SO:0000806 | fusion
Description: When two regions of DNA are joined together that are not normally together.
•
•
•
•
•
SO Term
SO:0000288 | engineered_fusion_gene
Description: A fusion gene that is engineered.
•
•
•
•
•
SO Term
SO:0000289 | microsatellite
Description: A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem.
•
•
•
•
•
SO Term
SO:0000290 | dinucleotide_repeat_microsatellite_feature
Description: A region of a repeating dinucleotide sequence (two bases).
•
•
•
•
•
SO Term
SO:0000291 | trinucleotide_repeat_microsatellite_feature
Description: A region of a repeating trinucleotide sequence (three bases).
•
•
•
•
•
SO Term
SO:0000293 | engineered_foreign_repetitive_element
Description: A repetitive element that is engineered and foreign.
•
•
•
•
•
SO Term
SO:0000294 | inverted_repeat
Description: The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC.
•
•
•
•
•
SO Term
SO:0000295 | U12_intron
Description: A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs.
•
•
•
•
•
SO Term
SO:0000296 | origin_of_replication
Description: A region of nucleic acid from which replication initiates; includes sequences that are recognized by replication proteins, the site from which the first separation of complementary strands occurs, and specific replication start sites.
•
•
•
•
•
SO Term
SO:0000297 | D_loop
Description: Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein.
•
•
•
•
•
SO Term
SO:0000298 | recombination_feature
Description: A feature where there has been exchange of genetic material in the event of mitosis or meiosis
•
•
•
•
•
SO Term
SO:0000669 | sequence_rearrangement_feature
Description: A feature where a segment of DNA has been rearranged from what it was in the parent cell.
•
•
•
•
•
SO Term
SO:0000299 | specific_recombination_site
Description: A location where recombination or occurs during mitosis or meiosis.
•
•
•
•
•
SO Term
SO:0000300 | recombination_feature_of_rearranged_gene
Description: A location where a gene is rearranged due to recombination during mitosis or meiosis.
•
•
•
•
•
SO Term
SO:0000301 | vertebrate_immune_system_gene_recombination_feature
Description: A feature where recombination has occurred for the purpose of generating a diversity in the immune system.
•
•
•
•
•
SO Term
SO:0000939 | vertebrate_immune_system_gene_recombination_signal_feature
Description: Feature used for the recombination of genomic material for the purpose of generating diversity of the immune system.
•
•
•
•
•
SO Term
SO:0000302 | J_gene_recombination_feature
Description: Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence.
•
•
•
•
•
SO Term
SO:0000303 | clip
Description: Part of the primary transcript that is clipped off during processing.
•
•
•
•
•
SO Term
SO:0000307 | CpG_island
Description: Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes.
•
•
•
•
•
SO Term
SO:0000789 | validated
Description: An attribute to describe a feature that has been proven.
•
•
•
•
•
SO Term
SO:0000312 | experimentally_determined
Description: Attribute to describe a feature that has been experimentally verified.
•
•
•
•
•
SO Term
SO:0000905 | status
Description: An attribute describing the status of a feature, based on the available evidence.
•
•
•
•
•
SO Term
SO:0000313 | stem_loop
Description: A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences.
•
•
•
•
•
SO Term
SO:0000314 | direct_repeat
Description: A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA.
•
•
•
•
•
SO Term
SO:0000315 | TSS
Description: The first base where RNA polymerase begins to synthesize the RNA transcript.
•
•
•
•
•
SO Term
SO:0000756 | cDNA
Description: DNA synthesized by reverse transcriptase using RNA as a template.
•
•
•
•
•
SO Term
SO:0000317 | cDNA_clone
Description: Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host.
•
•
•
•
•
SO Term
SO:0000318 | start_codon
Description: First codon to be translated by a ribosome.
•
•
•
•
•
SO Term
SO:0000319 | stop_codon
Description: In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis.
•
•
•
•
•
SO Term
SO:0000841 | spliceosomal_intron_region
Description: A region within an intron.
•
•
•
•
•
SO Term
SO:0000320 | intronic_splice_enhancer
Description: Sequences within the intron that modulate splice site selection for some introns.
•
•
•
•
•
SO Term
SO:0000344 | splice_enhancer
Description: Region of a transcript that regulates splicing.
•
•
•
•
•
SO Term
SO:0001056 | splicing_regulatory_region
Description: A regulatory_region that modulates splicing.
•
•
•
•
•
SO Term
SO:0000868 | plus_1_frameshift
Description: A frameshift caused by inserting one base.
•
•
•
•
•
SO Term
SO:0000321 | mRNA_with_plus_1_frameshift
Description: An mRNA with a plus 1 frameshift.
•
•
•
•
•
SO Term
SO:0002331 | accessible_DNA_region
Description: A region of DNA that is depleted of nucleosomes and accessible to DNA-binding proteins including transcription factors and nucleases.
•
•
•
•
•
SO Term
SO:0000322 | nuclease_hypersensitive_site
Description: A region of nucleotide sequence targeted by a nuclease enzyme that is found cleaved more than would be expected by chance.
•
•
•
•
•
SO Term
SO:0000684 | nuclease_sensitive_site
Description: A region of nucleotide sequence targeted by a nuclease enzyme.
•
•
•
•
•
SO Term
SO:0000323 | coding_start
Description: The first base to be translated into protein.
•
•
•
•
•
SO Term
SO:0000324 | tag
Description: A nucleotide sequence that may be used to identify a larger sequence.
•
•
•
•
•
SO Term
SO:0000325 | rRNA_large_subunit_primary_transcript
Description: A primary transcript encoding a large ribosomal subunit RNA.
•
•
•
•
•
SO Term
SO:0000326 | SAGE_tag
Description: A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts.
•
•
•
•
•
SO Term
SO:0000327 | coding_end
Description: The last base to be translated into protein. It does not include the stop codon.
•
•
•
•
•
SO Term
SO:0000328 | microarray_oligo
Description: A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid.
•
•
•
•
•
SO Term
SO:0000869 | plus_2_framshift
Description: A frameshift caused by inserting two bases.
•
•
•
•
•
SO Term
SO:0000329 | mRNA_with_plus_2_frameshift
Description: An mRNA with a plus 2 frameshift.
•
•
•
•
•
SO Term
SO:0000330 | conserved_region
Description: Region of sequence similarity by descent from a common ancestor.
•
•
•
•
•
SO Term
SO:0000331 | STS
Description: Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known.
•
•
•
•
•
SO Term
SO:0000332 | coding_conserved_region
Description: Coding region of sequence similarity by descent from a common ancestor.
•
•
•
•
•
SO Term
SO:0000333 | exon_junction
Description: The boundary between two exons in a processed transcript.
•
•
•
•
•
SO Term
SO:0000334 | nc_conserved_region
Description: Non-coding region of sequence similarity by descent from a common ancestor.
•
•
•
•
•
SO Term
SO:0000335 | mRNA_with_minus_2_frameshift
Description: A mRNA with a minus 2 frameshift.
•
•
•
•
•
SO Term
SO:0000867 | minus_2_frameshift
Description: A frameshift caused by deleting two bases.
•
•
•
•
•
SO Term
SO:0000442 | ds_oligo
Description: A double stranded oligonucleotide.
•
•
•
•
•
SO Term
SO:0000337 | RNAi_reagent
Description: A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference.
•
•
•
•
•
SO Term
SO:0000338 | MITE
Description: A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins.
•
•
•
•
•
SO Term
SO:0000339 | recombination_hotspot
Description: A region in a genome which promotes recombination.
•
•
•
•
•
SO Term
SO:0000341 | chromosome_band
Description: A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark.
•
•
•
•
•
SO Term
SO:0000342 | site_specific_recombination_target_region
Description: A region specifically recognised by a recombinase where recombination can occur during mitosis or meiosis.
•
•
•
•
•
SO Term
SO:0000345 | EST
Description: A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long.
•
•
•
•
•
SO Term
SO:0000947 | resolution_site
Description: A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles.
•
•
•
•
•
SO Term
SO:0000346 | loxP_site
Description: Cre-Recombination target sequence.
•
•
•
•
•
SO Term
SO:0000349 | protein_match
Description: A match against a protein sequence.
•
•
•
•
•
SO Term
SO:0000948 | inversion_site
Description: A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites.
•
•
•
•
•
SO Term
SO:0000350 | FRT_site
Description: An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid.
•
•
•
•
•
SO Term
SO:0000351 | synthetic_sequence
Description: An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence.
•
•
•
•
•
SO Term
SO:0000354 | group_1_intron_homing_endonuclease_target_region
Description: A region of intronic nucleotide sequence targeted by a nuclease enzyme.
•
•
•
•
•
SO Term
SO:0000355 | haplotype_block
Description: A region of the genome which is co-inherited as the result of the lack of historic recombination within it.
•
•
•
•
•
SO Term
SO:0000356 | RNA
Description: An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a D-ribose ring connected to a phosphate backbone.
•
•
•
•
•
SO Term
SO:0000357 | flanked
Description: An attribute describing a region that is bounded either side by a particular kind of region.
•
•
•
•
•
SO Term
SO:0000359 | floxed
Description: An attribute describing sequence that is flanked by Lox-P sites.
•
•
•
•
•
SO Term
SO:0000361 | FRT_flanked
Description: An attribute to describe sequence that is flanked by the FLP recombinase recognition site, FRT.
•
•
•
•
•
SO Term
SO:0000790 | invalidated
Description: An attribute describing a feature that is invalidated.
•
•
•
•
•
SO Term
SO:0000362 | invalidated_by_chimeric_cDNA
Description: A cDNA clone constructed from more than one mRNA. Usually an experimental artifact.
•
•
•
•
•
SO Term
SO:0000363 | floxed_gene
Description: A transgene that is floxed.
•
•
•
•
•
SO Term
SO:0000902 | transgene
Description: A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another.
•
•
•
•
•
SO Term
SO:0000781 | transgenic
Description: Attribute describing sequence that has been integrated with foreign sequence.
•
•
•
•
•
SO Term
SO:0000364 | transposable_element_flanking_region
Description: The region of sequence surrounding a transposable element.
•
•
•
•
•
SO Term
SO:0000365 | integron
Description: A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site.
•
•
•
•
•
SO Term
SO:0000366 | insertion_site
Description: The junction where an insertion occurred.
•
•
•
•
•
SO Term
SO:0000946 | integration_excision_site
Description: A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site.
•
•
•
•
•
SO Term
SO:0000367 | attI_site
Description: A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place.
•
•
•
•
•
SO Term
SO:0000368 | transposable_element_insertion_site
Description: The junction in a genome where a transposable_element has inserted.
•
•
•
•
•
SO Term
SO:0000371 | conjugative_transposon
Description: A transposon that encodes function required for conjugation.
•
•
•
•
•
SO Term
SO:0001185 | enzymatic
Description: An attribute describing the sequence of a transcript that has catalytic activity with or without an associated ribonucleoprotein.
•
•
•
•
•
SO Term
SO:0000372 | enzymatic_RNA
Description: An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein.
•
•
•
•
•
SO Term
SO:0000456 | recombinationally_rearranged_gene
Description: A gene that is recombinationally rearranged.
•
•
•
•
•
SO Term
SO:0000373 | recombinationally_inverted_gene
Description: A recombinationally rearranged gene by inversion.
•
•
•
•
•
SO Term
SO:1000036 | inversion
Description: A continuous nucleotide sequence is inverted in the same position.
•
•
•
•
•
SO Term
SO:0000940 | recombinationally_rearranged
Description: A gene that is recombinationally rearranged.
•
•
•
•
•
SO Term
SO:0000374 | ribozyme
Description: An RNA with catalytic activity.
•
•
•
•
•
SO Term
SO:0001186 | ribozymic
Description: An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein.
•
•
•
•
•
SO Term
SO:0000651 | cytosolic_LSU_rRNA
Description: Cytosolic LSU rRNA is an RNA component of the large subunit of cytosolic ribosomes.
•
•
•
•
•
SO Term
SO:0000375 | cytosolic_5_8S_rRNA
Description: Cytosolic 5.8S rRNA is an RNA component of the large subunit of cytosolic ribosomes in eukaryotes.
•
•
•
•
•
SO Term
SO:0002343 | cytosolic_rRNA
Description: Cytosolic rRNA is an RNA component of the small or large subunits of cytosolic ribosomes.
•
•
•
•
•
SO Term
SO:0000376 | RNA_6S
Description: A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase.
•
•
•
•
•
SO Term
SO:0000377 | CsrB_RsmB_RNA
Description: An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family.
•
•
•
•
•
USDA
InterMine logo
The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
LegumeMine || ArachisMine | CicerMine | GlycineMine | LensMine | LupinusMine | PhaseolusMine | VignaMine | MedicagoMine
InterMine © 2002 - 2022 Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, United Kingdom