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Search results 1601 to 1700 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0001678 | regulatory_promoter_element
Description: A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region.
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SO Term
SO:0001668 | proximal_promoter_element
Description: DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor).
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SO Term
SO:0001670 | distal_promoter_element
Description: A regulatory promoter element that is distal from the TSS.
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SO Term
SO:0001672 | bacterial_RNApol_promoter_sigma54_element
Description: A DNA sequence to which bacterial RNA polymerase sigma 54 binds, to begin transcription.
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SO Term
SO:0001673 | minus_12_signal
Description: A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54.
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SO Term
SO:0001674 | minus_24_signal
Description: A conserved region about 24-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54.
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SO Term
SO:0001675 | A_box_type_1
Description: An A box within an RNA polymerase III type 1 promoter.
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SO Term
SO:0001676 | A_box_type_2
Description: An A box within an RNA polymerase III type 2 promoter.
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SO Term
SO:0001677 | intermediate_element
Description: A core promoter region of RNA polymerase III type 1 promoters.
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SO Term
SO:0001681 | recombination_regulatory_region
Description: A regulatory region that is involved in the control of the process of recombination.
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SO Term
SO:0001682 | replication_regulatory_region
Description: A regulatory region that is involved in the control of the process of nucleotide replication.
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SO Term
SO:0001684 | experimental_feature_attribute
Description: An attribute of an experimentally derived feature.
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SO Term
SO:0001685 | score
Description: The score of an experimentally derived feature such as a p-value.
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SO Term
SO:0001686 | quality_value
Description: An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score.
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SO Term
SO:0001954 | restriction_enzyme_region
Description: A region related to restriction enzyme function.
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SO Term
SO:0001687 | restriction_enzyme_recognition_site
Description: The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site.
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SO Term
SO:0002204 | nucleotide_cleavage_site
Description: A point in nucleic acid where a cleavage event occurs.
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SO Term
SO:0001688 | restriction_enzyme_cleavage_junction
Description: The boundary at which a restriction enzyme breaks the nucleotide sequence.
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SO Term
SO:0001694 | single_strand_restriction_enzyme_cleavage_site
Description: A restriction enzyme cleavage site whereby only one strand is cut.
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SO Term
SO:0001689 | five_prime_restriction_enzyme_junction
Description: The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence.
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SO Term
SO:0001692 | sticky_end_restriction_enzyme_cleavage_site
Description: A site where restriction enzymes can cleave that will produce an overhang or 'sticky end'.
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SO Term
SO:0001690 | three_prime_restriction_enzyme_junction
Description: The restriction enzyme cleavage junction on the 3' strand of the nucleotide sequence.
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SO Term
SO:0001691 | blunt_end_restriction_enzyme_cleavage_site
Description: A restriction enzyme recognition site that, when cleaved, results in no overhangs.
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SO Term
SO:0001693 | blunt_end_restriction_enzyme_cleavage_junction
Description: A restriction enzyme cleavage site where both strands are cut at the same position.
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SO Term
SO:0001695 | restriction_enzyme_single_strand_overhang
Description: A terminal region of DNA sequence where the end of the region is not blunt ended.
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SO Term
SO:0001696 | experimentally_defined_binding_region
Description: A region that has been implicated in binding although the exact coordinates of binding may be unknown.
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SO Term
SO:0001697 | ChIP_seq_region
Description: A region of sequence identified by CHiP seq technology to contain a protein binding site.
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SO Term
SO:0001698 | ASPE_primer
Description: "A primer containing an SNV at the 3' end for accurate genotyping.
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SO Term
SO:0001699 | dCAPS_primer
Description: A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site.
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SO Term
SO:0001700 | histone_modification
Description: Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation.
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SO Term
SO:0001701 | histone_methylation_site
Description: A histone modification site where the modification is the methylation of the residue.
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SO Term
SO:0001702 | histone_acetylation_site
Description: A histone modification where the modification is the acylation of the residue.
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SO Term
SO:0001973 | histone_3_acetylation_site
Description: A histone 3 modification where the modification is the acetylation of the residue.
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SO Term
SO:0001703 | H3K9_acetylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001704 | H3K14_acetylation_site
Description: A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001734 | H3K4_methylation_site
Description: A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated.
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SO Term
SO:0001705 | H3K4_monomethylation_site
Description: A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated.
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SO Term
SO:0001706 | H3K4_trimethylation
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated.
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SO Term
SO:0001736 | H3K9_methylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001707 | H3K9_trimethylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001732 | H3K27_methylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001708 | H3K27_monomethylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
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SO Term
SO:0001709 | H3K27_trimethylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001735 | H3K79_methylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001710 | H3K79_monomethylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated.
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SO Term
SO:0001711 | H3K79_dimethylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated.
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SO Term
SO:0001712 | H3K79_trimethylation_site
Description: A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001713 | H4K20_monomethylation_site
Description: A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated.
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SO Term
SO:0001714 | H2BK5_monomethylation_site
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated.
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SO Term
SO:0001715 | ISRE
Description: An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding.
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SO Term
SO:0001716 | histone_ubiqitination_site
Description: A histone modification site where ubiquitin may be added.
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SO Term
SO:0001717 | H2B_ubiquitination_site
Description: A histone modification site on H2B where ubiquitin may be added.
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SO Term
SO:0001718 | H3K18_acetylation_site
Description: A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001719 | H3K23_acetylation_site
Description: A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated.
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SO Term
SO:0001733 | H3K36_methylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated.
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SO Term
SO:0001722 | H3K36_monomethylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
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SO Term
SO:0001723 | H3K36_dimethylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated.
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SO Term
SO:0001724 | H3K36_trimethylation_site
Description: A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated.
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SO Term
SO:0001725 | H3K4_dimethylation_site
Description: A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated.
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SO Term
SO:0001726 | H3K27_dimethylation_site
Description: A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated.
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SO Term
SO:0001727 | H3K9_monomethylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated.
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SO Term
SO:0001728 | H3K9_dimethylation_site
Description: A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated.
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SO Term
SO:0001972 | histone_4_acetylation_site
Description: A histone 4 modification where the modification is the acetylation of the residue.
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SO Term
SO:0001729 | H4K16_acetylation_site
Description: A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001730 | H4K5_acetylation_site
Description: A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001731 | H4K8_acetylation_site
Description: A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated.
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SO Term
SO:0001737 | histone_acylation_region
Description: A histone modification, whereby the histone protein is acylated at multiple sites in a region.
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SO Term
SO:0001738 | H4K_acylation_region
Description: A region of the H4 histone whereby multiple lysines are acylated.
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SO Term
SO:0001739 | gene_with_non_canonical_start_codon
Description: A gene with a start codon other than AUG.
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SO Term
SO:0001740 | gene_with_start_codon_CUG
Description: A gene with a translational start codon of CUG.
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SO Term
SO:3000000 | gene_segment
Description: A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination.
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SO Term
SO:0001741 | pseudogenic_gene_segment
Description: A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product.
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SO Term
SO:0001742 | copy_number_gain
Description: A sequence alteration whereby the copy number of a given regions is greater than the reference sequence.
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SO Term
SO:0001743 | copy_number_loss
Description: A sequence alteration whereby the copy number of a given region is less than the reference sequence.
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SO Term
SO:0001744 | UPD
Description: Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent.
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SO Term
SO:0001745 | maternal_uniparental_disomy
Description: Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the mother and no copies of the same chromosome or region from the father.
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SO Term
SO:0001746 | paternal_uniparental_disomy
Description: Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the father and no copies of the same chromosome or region from the mother.
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SO Term
SO:0001747 | open_chromatin_region
Description: A DNA sequence that in the normal state of the chromosome corresponds to an unfolded, un-complexed stretch of double-stranded DNA.
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SO Term
SO:0001748 | SL3_acceptor_site
Description: A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0001749 | SL4_acceptor_site
Description: A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0001750 | SL5_acceptor_site
Description: A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0001751 | SL6_acceptor_site
Description: A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0001752 | SL7_acceptor_site
Description: A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0001753 | SL8_acceptor_site
Description: A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0001754 | SL9_acceptor_site
Description: A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO:0001755 | SL10_acceptor_site
Description: A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO:0001756 | SL11_acceptor_site
Description: A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO:0001757 | SL12_acceptor_site
Description: A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts.
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SO Term
SO:0001758 | duplicated_pseudogene
Description: A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence.
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SO Term
SO:0001759 | unitary_pseudogene
Description: A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional.
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SO Term
SO:0001761 | variant_quality
Description: A dependent entity that inheres in a bearer, a sequence variant.
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SO Term
SO:0001762 | variant_origin
Description: A quality inhering in a variant by virtue of its origin.
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SO Term
SO:0001763 | variant_frequency
Description: A physical quality which inheres to the variant by virtue of the number instances of the variant within a population.
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SO Term
SO:0001764 | unique_variant
Description: A physical quality which inheres to the variant by virtue of the number instances of the variant within a population.
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SO Term
SO:0001765 | rare_variant
Description: When a variant from the genomic sequence is rarely found in the general population. The threshold for 'rare' varies between studies.
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SO Term
SO:0001766 | polymorphic_variant
Description: A variant that affects one of several possible alleles at that location, such as the major histocompatibility complex (MHC) genes.
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SO Term
SO:0001767 | common_variant
Description: When a variant from the genomic sequence is commonly found in the general population.
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SO Term
SO:0001768 | fixed_variant
Description: When a variant has become fixed in the population so that it is now the only variant.
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SO Term
SO:0001769 | variant_phenotype
Description: A quality inhering in a variant by virtue of its phenotype.
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SO Term
SO:0001770 | benign_variant
Description: A variant that does not affect the function of the gene or cause disease.
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