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Search results 801 to 900 out of 202262 for *

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Categories

Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR19446:SF107 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR31351 | EXPRESSED PROTEIN
 
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Ontology Term
Pfam:PF05703 | Auxin canalisation
Description: This domain is frequently found at the N-terminus of proteins containing Pfam:PF08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalisation by recruitment of the PIN1 auxin efflux protein to the cell membrane [1].
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Ontology Term
Pfam:PF08458 | Plant pleckstrin homology-like region
Description: This family describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
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Ontology Term
PANTHER:PTHR23421 | BETA-GALACTOSIDASE RELATED
 
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Ontology Term
PANTHER:PTHR11624 | DEHYDROGENASE RELATED
 
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Ontology Term
PANTHER:PTHR11624:SF21 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF02779 | Transketolase, pyrimidine binding domain
Description: This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases.
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Ontology Term
Pfam:PF02780 | Transketolase, C-terminal domain
Description: The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site [2].
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Ontology Term
PANTHER:PTHR11802 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE
 
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Ontology Term
Pfam:PF00450 | Serine carboxypeptidase
Description: NULL
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Ontology Term
PANTHER:PTHR19316 | PROTEIN FOLDING REGULATOR
 
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Ontology Term
PANTHER:PTHR12620 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
 
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Ontology Term
Pfam:PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Description: NULL
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Ontology Term
Pfam:PF13893 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Description: The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins.
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Ontology Term
PANTHER:PTHR10178:SF14 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR22844 | F-BOX AND WD40 DOMAIN PROTEIN
 
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Ontology Term
PANTHER:PTHR11236 | AMINOBENZOATE/ANTHRANILATE SYNTHASE
 
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Ontology Term
PANTHER:PTHR11236:SF3 | ISOCHORISMATE SYNTHASE 1, CHLOROPLASTIC-RELATED
 
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Ontology Term
Pfam:PF00425 | chorismate binding enzyme
Description: This family includes the catalytic regions of the chorismate binding enzymes anthranilate synthase, isochorismate synthase, aminodeoxychorismate synthase and para-aminobenzoate synthase.
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Ontology Term
PANTHER:PTHR12640 | RIBOPHORIN II
 
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Ontology Term
PANTHER:PTHR12640:SF0 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2
 
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Ontology Term
Pfam:PF05817 | Oligosaccharyltransferase subunit Ribophorin II
Description: This family contains eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of the following proteins: ribophorins I and II (RI and RII), OST48, and Dadl, N33/IAP, OST4, STT3. The family also includes the SWP1 protein from yeast. In yeast the oligosaccharyltransferase complex is composed 7 or 8 subunits, SWP1, being one of them [2][3].
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Ontology Term
PANTHER:PTHR11599:SF16 | PROTEASOME SUBUNIT ALPHA TYPE-2
 
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Ontology Term
Pfam:PF10584 | Proteasome subunit A N-terminal signature
Description: This domain is conserved in the A subunits of the proteasome complex proteins.
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Ontology Term
PANTHER:PTHR14009 | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN
 
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Ontology Term
PANTHER:PTHR14009:SF1 | MITOCHONDRIAL PROTON/CALCIUM EXCHANGER PROTEIN
 
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Ontology Term
Pfam:PF07766 | LETM1-like, RBD
Description: Members of this entry are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange [3]. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans [1]. This entry represents the ribosome-binding domain (RBD) of LETM1/MDM38 proteins [4].
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Ontology Term
PANTHER:PTHR10994 | RETICULON
 
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Ontology Term
Pfam:PF03407 | Nucleotide-diphospho-sugar transferase
Description: Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases.
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Ontology Term
PANTHER:PTHR11101 | PHOSPHATE TRANSPORTER
 
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Ontology Term
Pfam:PF01384 | Phosphate transporter family
Description: This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter [1]. This family also contains the leukaemia virus receptor Swiss:Q08344.
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Ontology Term
PANTHER:PTHR20852 | GLUTAMINE SYNTHETASE
 
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Ontology Term
PANTHER:PTHR20852:SF14 | GLUTAMINE SYNTHETASE 2 CYTOPLASMIC
 
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Ontology Term
Pfam:PF00120 | Glutamine synthetase, catalytic domain
Description: NULL
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Ontology Term
PANTHER:PTHR31677 | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR
 
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Ontology Term
PANTHER:PTHR31677:SF0 | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10-RELATED
 
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Ontology Term
PANTHER:PTHR32370 | OS12G0117600 PROTEIN
 
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Ontology Term
Pfam:PF03000 | NPH3 family
Description: Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay [1].
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Ontology Term
PANTHER:PTHR22870 | REGULATOR OF CHROMOSOME CONDENSATION
 
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Ontology Term
Pfam:PF00415 | Regulator of chromosome condensation (RCC1) repeat
Description: NULL
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Ontology Term
PANTHER:PTHR31969 | GEM-LIKE PROTEIN 2
 
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Ontology Term
PANTHER:PTHR31969:SF0 | GEM-LIKE PROTEIN 1-RELATED
 
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Ontology Term
Pfam:PF02893 | GRAM domain
Description: The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Note the alignment is lacking the last two beta strands and alpha helix.
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Ontology Term
Pfam:PF04059 | RNA recognition motif 2
Description: NULL
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Ontology Term
Pfam:PF07386 | Protein of unknown function (DUF1499)
Description: This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.
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Ontology Term
PANTHER:PTHR12280 | PANTOTHENATE KINASE
 
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Ontology Term
Pfam:PF03630 | Fumble
Description: Fumble is required for cell division in Drosophila. Mutants lacking fumble exhibit abnormalities in bipolar spindle organisation, chromosome segregation, and contractile ring formation. Analyses have demonstrated that encodes three protein isoforms, all of which contain a domain with high similarity to the pantothenate kinases of A. nidulans and mouse[1]. A role of fumble in membrane synthesis has been proposed[1].
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Ontology Term
PANTHER:PTHR31385 | PUTATIVE (DUF220)-RELATED
 
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Ontology Term
Pfam:PF02713 | Domain of unknown function DUF220
Description: This is family consists of a region in several Arabidopsis thaliana hypothetical proteins none of which have any known function. The aligned region contains two cysteine residues. This domain shows structural similarity to members of the Bet v1-like superfamily [1] and may be involved in lipid binding.
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Ontology Term
PANTHER:PTHR11941 | ENOYL-COA HYDRATASE-RELATED
 
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Ontology Term
Pfam:PF00378 | Enoyl-CoA hydratase/isomerase
Description: This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase.
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Ontology Term
PANTHER:PTHR31375 | FAMILY NOT NAMED
 
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Ontology Term
Pfam:PF00295 | Glycosyl hydrolases family 28
Description: Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.
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Ontology Term
Pfam:PF13812 | Pentatricopeptide repeat domain
Description: This family matches additional variants of the PPR repeat that were not captured by the model for Pfam:PF01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana [1].
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Ontology Term
Pfam:PF12708 | Pectate lyase superfamily protein
Description: This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
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Ontology Term
PANTHER:PTHR23402 | PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED
 
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Ontology Term
PANTHER:PTHR23402:SF1 | RE07960P
 
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Ontology Term
Pfam:PF01470 | Pyroglutamyl peptidase
Description: NULL
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Ontology Term
PANTHER:PTHR31675 | PROTEIN YABBY 6-RELATED
 
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Ontology Term
Pfam:PF04690 | YABBY protein
Description: YABBY proteins are a group of plant-specific transcription involved in the specification of abaxial polarity in lateral organs [1,2].
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Ontology Term
Pfam:PF13961 | Domain of unknown function (DUF4219)
Description: This domain is very short and is found at the N-terminal of many Gag-pol polyprotein and related proteins. There is a highly conserved YxxWxxxM sequence motif.
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Ontology Term
PANTHER:PTHR11751 | ALANINE AMINOTRANSFERASE
 
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Ontology Term
PANTHER:PTHR11751:SF29 | AT04676P
 
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Ontology Term
Pfam:PF00155 | Aminotransferase class I and II
Description: NULL
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Ontology Term
PANTHER:PTHR11749 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE
 
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Ontology Term
Pfam:PF00834 | Ribulose-phosphate 3 epimerase family
Description: This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
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Ontology Term
PANTHER:PTHR32285 | PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED
 
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Ontology Term
Pfam:PF13839 | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Description: The PC-Esterase family [1] is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/cold acclimatization proteins typified by Arabidopsis thaliana ESKIMO1 [2][3], animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily [1]. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins [1][3]. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity [1]. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes [1]. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by PC-Esterase domain [1].
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Ontology Term
Pfam:PF14416 | PMR5 N terminal Domain
Description: The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich predicted sugar binding domain followed by the PC-Esterase (acyl esterase) domain [1].
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Ontology Term
PANTHER:PTHR14094 | SIGNAL RECOGNITION PARTICLE 72
 
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Ontology Term
PANTHER:PTHR14094:SF9 | SIGNAL RECOGNITION PARTICLE SUBUNIT SRP72
 
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Ontology Term
Pfam:PF00133 | tRNA synthetases class I (I, L, M and V)
Description: Other tRNA synthetase sub-families are too dissimilar to be included.
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Ontology Term
Pfam:PF01657 | Salt stress response/antifungal
Description: This domain is often found in association with the kinase domains Pfam:PF00069 or Pfam:PF07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges [1]. It has a role in salt stress response [2] and has antifungal activity [3].
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Ontology Term
PANTHER:PTHR24003 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR24003:SF321 | INNER MEMBRANE PROTEIN YBJJ-RELATED
 
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Ontology Term
Pfam:PF07690 | Major Facilitator Superfamily
Description: NULL
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Ontology Term
PANTHER:PTHR11220 | HEME-BINDING PROTEIN-RELATED
 
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Ontology Term
Pfam:PF04832 | SOUL heme-binding protein
Description: This family represents a group of putative heme-binding proteins [1]. Our family includes archaeal and bacterial homologues.
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Ontology Term
PANTHER:PTHR24015:SF27 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR11998 | CLATHRIN COAT ASSEMBLY PROTEIN
 
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Ontology Term
Pfam:PF00928 | Adaptor complexes medium subunit family
Description: This family also contains members which are coatomer subunits.
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Ontology Term
Pfam:PF01217 | Clathrin adaptor complex small chain
Description: NULL
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Ontology Term
PANTHER:PTHR11880 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR11880:SF2 | 40S RIBOSOMAL PROTEIN S15
 
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Ontology Term
Pfam:PF12681 | Glyoxalase-like domain
Description: This domain is related to the Glyoxalase domain Pfam:PF00903.
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Ontology Term
PANTHER:PTHR16301 | IMPACT-RELATED
 
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Ontology Term
PANTHER:PTHR16301:SF0 | IMPACT FAMILY MEMBER YIGZ
 
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Ontology Term
Pfam:PF01205 | Uncharacterized protein family UPF0029
Description: NULL
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Ontology Term
PANTHER:PTHR23291 | BAX INHIBITOR-RELATED
 
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Ontology Term
Pfam:PF01027 | Inhibitor of apoptosis-promoting Bax1
Description: Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress [2]. BI-1 appears to exert its effect through an interaction with calmodulin [3]. The budding yeast member of this family has been found unexpectedly to encode a BH3 domain-containing protein (Ybh3p) that regulates the mitochondrial pathway of apoptosis in a phylogenetically conserved manner [4]. Examination of the crystal structure of a bacterial member of this family shows that these proteins mediate a calcium leak across the membrane that is pH-dependent. Calcium homoeostasis balances passive calcium leak with active calcium uptake. The structure exists in a pore-closed and pore-open conformation, at pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline transition; together these findings suggest that pH controls the conformational transition [5].
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Ontology Term
PANTHER:PTHR10177 | CYCLINS
 
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Ontology Term
Pfam:PF00134 | Cyclin, N-terminal domain
Description: Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.
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Ontology Term
Pfam:PF02984 | Cyclin, C-terminal domain
Description: Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the C-terminal domain.
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Ontology Term
PANTHER:PTHR18937 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR13697 | PHOSPHOFRUCTOKINASE
 
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Ontology Term
Pfam:PF00365 | Phosphofructokinase
Description: NULL
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Ontology Term
PANTHER:PTHR23317 | DEDICATOR OF CYTOKINESIS DOCK
 
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Ontology Term
PANTHER:PTHR11002 | CARBONIC ANHYDRASE
 
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Ontology Term
Pfam:PF00484 | Carbonic anhydrase
Description: This family includes carbonic anhydrases as well as a family of non-functional homologues related to YbcF.
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