Files in this directory are genome annotation files for Glycine D3 tomentella, accession G1403, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition" The D3 identifier in the name signifies an isozyme class for G. tomentella, marking this as a diploid species in a diploid/polyploid complex in the tomentella group. See Sherman-Broyles ... Doyle et al., 2014 (doi:10.3732/ajb.1400121).
Files in this directory are genome annotation files for Glycine falcata, accession G1718, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition"
Files in this directory are genome assemblies for Glycine cyrtoloba, accession G1267, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition"
Files in this directory are genome assemblies for Glycine D3 tomentella, accession G1403, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition" The D3 identifier in the name signifies an isozyme class for G. tomentella, marking this as a diploid species in a diploid/polyploid complex in the tomentella group. See Sherman-Broyles ... Doyle et al., 2014 (doi:10.3732/ajb.1400121).
Files in this directory are genome assemblies for Glycine dolichocarpa, accession G1134, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition"
Genome assembly for Glycine max accession 58-161 (SoyL04) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession Amsoy (SoyC05) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession DongNongNo_50 (SoyC12) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession FengDiHuang (SoyL07) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession HanDouNo_5 (SoyC09) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Files in this directory are genome assembly files for cultivar Hefeng 25 (Hefeng25_IGA1002 in publication; WHFS_GmHF25_1.0 in the GenBank assembly record), Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Genome assembly for Glycine max accession HeiHeNo_43 (SoyC13) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Files in this directory are genome assembly files for cultivar Huaxia 3 (Huaxia3_IGA1007; WHFS_GmHX3_1.0 in the GenBank assembly record), Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Genome assembly for Glycine max accession JiDouNo_17 (SoyC11) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession JinDouNo_23 (SoyC07) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Files in this directory are genome assembly files for cultivar Jinyuan (Jinyuan_IGA1006 in the publication; WHFS_GmJY_1.0 in the GenBank assembly record), Chu et al. (2020); https://www.ncbi.nlm.nih.gov/bioproject/?term=prjna561626. Note: the publication uses the form Jingyuan in one place, but we use the form Jinyuan (lacking g) as used in the GenBank record. This accession may be in the same lineage as others called Jinuan, e.g. https://npgsweb.ars-grin.gov/gringlobal/accessiondetail?id=1370763
Genome assembly for Glycine max accession JuXuanNo_23 (SoyC03) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession KeShanNo_1 (SoyC14) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Initial genome assembly for Glycine max cultivar Lee. The assembly incorporates Illumina sequence and optical mapping from NRGene. Pseudomolecule anchoring of scaffolds was accomplished using two dense genetic maps as well as synteny comparisons with Glycine max reference assembly for cultivar Williams 82 and Glycine soja PI 483463. This assembly corresponds to quality control round 12 (QC12), Oct 26, 2017
Genome assembly for Glycine max accession PI_398296 (SoyL05) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession PI_548362 (SoyC10) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession QiHuangNo_34 (SoyC08) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession ShiShengChangYe (SoyL09) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession TieFengNo_18 (SoyC02) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession TieJiaSiLiHuang (SoyL08) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession TongShanTianEDan (SoyL03) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession WanDouNo_28 (SoyC04) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Files in this directory are genome assembly files for cultivar Wenfeng 7 (Wenfeng7_IGA1001 in publication; WHFS_GmWF7_1.0 in the GenBank assembly redord); Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Genome assembly for Williams 82. The Williams 82 version 4 assembly (Wm82v4) builds on the widely-used assembly version 2, as well as an incremental version 3 that involved incorporation of BAC sequence to fill contig gaps in 2016. The Wm82v2 assembly was primarily Sanger-based, and new gap-filling in v3 and v4 utilized PacBio-based BAC assemblies targeted to gap regions. The Wm82v4 assembly closed 3,626 gaps and added 5,138,978 bp of sequence relative to Wm82v2, increasing the contig N50 from 233.1 kbp to 419.3 kbp.
Files in this directory are genome assembly files for cultivar Williams 82 (Wm82_IGA1008 in publication; WHFS_GmW82_1.0 in the GenBank assembly record), Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
This release (Glycine max var. Williams 82-ISU-01) is an inbred line developed by Robert Stupar (University of Minnesota) by inbreeding original W82 seed. The resulting genome is a haploid version of W82. The original W82 is from an agronomic line and contains variation between the two haplotypes. This genome can be used as an updated version of W82 -- the soybean reference genome, however, it is not an identical genotype to previous reference. Where possible, we have maintained continuity with the previous reference and the annotation is based on all available W82 transcript evidence. It is the most complete and highest quality soybean genome completed to date. Genome assembly consists of 47.07x of single haplotype CCS PACBIO coverage (17,049 bp average read size), assembled using HiFiAsm and HIC and the resulting sequence was polished using RACON. See full description at Phytozome/JGI repository (address above).
Genome assembly for Glycine max accession XuDouNo_1 (SoyC01) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession YuDouNo_22 (SoyC06) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Files in this directory are genome assembly files for cultivar Zhonghuang 13 (Zh13_IGA1005 in publication; WHFS_GmZH13_1.0 in the GenBank assembly record), Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Files in this directory are genome assembly files for cultivar Zhonghuang 35 (Zh35_IGA1004 in publication; WHFS_GmZH35_1.0 in the GenBank assembly record), Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Genome assembly for Glycine max accession ZhangChunManCangJin (SoyL06) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession Zhutwinning2 (SoyL01) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine max accession ZiHuaNo_4 (SoyL02) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Files in this directory are genome assembly files for Glycine soja F (F_IGA1003 in publication; WHFS_GsojaF_1.0 in the GenBank assembly record), Chu et al. (2021): Egiht soybean reference genome resources from varying latitudes and agronmic traits.
The aims of this project were to generate a high-quality reference genome assembly for Glycine soja accession PI 483463, which shows high genotypic diversity with respect to elite cultivars from Glycine max (soybean). The assembly incorporates Illumina sequence and optical mapping from NRGene. Pseudomolecule anchoring of scaffolds was accomplished using two dense genetic maps as well as synteny comparisons with the Glycine max reference assembly for cultivar Williams 82 (JGI Glyma.Wm82.a2) and Glycine max cultivar Lee. This assembly corresponds to quality control round 13 (QC13), Nov 7, 2017
Genome assembly for Glycine soja accession PI_549046 (SoyW02) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine soja accession PI_562565 (SoyW01) from the 26 accession pan-genome set of Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Genome assembly for Glycine soja accession PI_578357 (SoyW03) from Liu, Du et al. 2020. The 26 accessions were sequenced individually using single-molecule real-time (SMRT) sequencing with an average coverage depth of 96X, optical mapping with an average coverage depth of 277X, chromosome conformation capture (Hi-C) sequencing with an average coverage depth of 136X, and Illumina sequencing (HiSeq) with an average coverage depth of 68X.
Files in this directory are genome assemblies for Glycine stenophita, accession G1974, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition"
Files in this directory are genome assemblies for Glycine syndetika, accession G1300, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition"
Files in this directory are genome annotation files for Glycine cyrtoloba, accession G1267, from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition"
Gene annotations for Glycine max accession 58-161 (SoyL04) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Files in this directory are genome annotation files for Glycine dolichocarpa, accession G1134,from Zhuang, Wang et al. (2022): "Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition"
Files in this directory are genome annotation files for cultivar Jinyuan, Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits. Note: the publication uses the form Jingyuan in one place, but we use the form Jinyuan (lacking g) as used in the GenBank record. This accession may be in the same lineage as others called Jinuan, e.g. https://npgsweb.ars-grin.gov/gringlobal/accessiondetail?id=1370763
Gene annotations for Glycine max accession HeiHeNo_43 (SoyC13) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Files in this directory are genome annotation files for cultivar Huaxia3, Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Gene annotations for Glycine max accession JinDouNo_23 (SoyC07) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession JuXuanNo_23 (SoyC03) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession JiDouNo_17 (SoyC11) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Files in this directory are genome annotation files for cultivar F, Chu et al. (2021): Egiht soybean reference genome resources from varying latitudes and agronmic traits.
Gene annotations for Glycine soja accession PI_549046 (SoyW02) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession YuDouNo_22 (SoyC06) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession ZiHuaNo_4 (SoyL02) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Files in this directory are genome assembly files for cultivar Zhonghuang 13, Shen et al. (2019): Update soybean Zhonghuang 13 genome to a golden reference
Gene annotations for Glycine max accession Amsoy (SoyC05) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession DongNongNo_50 (SoyC12) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Files in this directory are genome annotation files for cultivar Hefeng 25, Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Gene annotations for Glycine max accession FengDiHuang (SoyL07) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession HanDouNo_5 (SoyC09) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Files in this directory are genome annotation files for cultivar Wenfeng 7, Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Gene annotations for Glycine max accession WanDouNo_28 (SoyC04) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Files in this directory are genome annotation files for cultivar William 82, Chu et al. (2021): Eight soybean reference genome resources from varying latitudes and agronmic traits.
Gene annotations for Glycine max accession KeShanNo_1 (SoyC14) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession PI_548362 (SoyC10) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession PI_398296 (SoyL05) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession ShiShengChangYe (SoyL09) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession QiHuangNo_34 (SoyC08) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
Gene annotations for Glycine max accession TieFengNo_18 (SoyC02) from Liu, Du et al. 2020. Annotations of the protein-coding and small RNA genes employed Augustus trained by FGENESH, transcript support based on RNA samples from roots, stems, leaves, flowers, and seeds at different developmental stages;and integration of ab initio and evidence-based results with MAKER.
