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Search results 5101 to 5200 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR32191:SF2 | TETRASPANIN-7
 
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Ontology Term
PANTHER:PTHR10947 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47
 
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Ontology Term
Pfam:PF03483 | B3/4 domain
Description: This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
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Ontology Term
PANTHER:PTHR23105:SF12 | H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 2
 
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Ontology Term
PANTHER:PTHR31377 | AGMATINE DEIMINASE-RELATED
 
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Ontology Term
Pfam:PF04371 | Porphyromonas-type peptidyl-arginine deiminase
Description: Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (Pfam:PF03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologues) [1]. The predicted catalytic residues in PPAD (Swiss:Q9RQJ2) are Asp130, Asp187, His236, Asp238 and Cys351 [1]. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [2].
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Ontology Term
Pfam:PF01928 | CYTH domain
Description: These sequences are functionally identified as members of the adenylate cyclase family, which catalyses the conversion of ATP to 3',5'-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of three classes of adenylyl cyclases have been solved [3].
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Ontology Term
PANTHER:PTHR11761 | 50S/60S RIBOSOMAL PROTEIN L14/L23
 
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Ontology Term
PANTHER:PTHR23344 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE
 
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Ontology Term
Pfam:PF03009 | Glycerophosphoryl diester phosphodiesterase family
Description: E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted [1]. This family appears to have weak but not significant matches to mammalian phospholipase C Pfam:PF00388, which suggests that this family may adopt a TIM barrel fold.
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Ontology Term
PANTHER:PTHR10202 | PRESENILIN
 
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Ontology Term
PANTHER:PTHR10202:SF13 | PRESENILIN HOMOLOG
 
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Ontology Term
Pfam:PF01080 | Presenilin
Description: Mutations in presenilin-1 are a major cause of early onset Alzheimer's disease [1]. It has been found that presenilin-1 (Swiss:P49768) binds to beta-catenin in-vivo [3]. This family also contains SPE proteins from C.elegans.
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Ontology Term
Pfam:PF00130 | Phorbol esters/diacylglycerol binding domain (C1 domain)
Description: This domain is also known as the Protein kinase C conserved region 1 (C1) domain.
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Ontology Term
PANTHER:PTHR21531 | LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED
 
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Ontology Term
PANTHER:PTHR19305 | SYNAPTOSOMAL ASSOCIATED PROTEIN
 
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Ontology Term
PANTHER:PTHR14363 | HEPARANASE-RELATED
 
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Ontology Term
PANTHER:PTHR14363:SF7 | HEPARANASE-LIKE PROTEIN 3
 
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Ontology Term
Pfam:PF03662 | Glycosyl hydrolase family 79, N-terminal domain
Description: Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesised as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumour cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [1].
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Ontology Term
PANTHER:PTHR31434 | S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
 
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Ontology Term
Pfam:PF01844 | HNH endonuclease
Description: His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity [4].
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Ontology Term
PANTHER:PTHR31889 | FUCOSYLTRANSFERASE 2-RELATED
 
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Ontology Term
Pfam:PF03254 | Xyloglucan fucosyltransferase
Description: Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue [1].
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Ontology Term
PANTHER:PTHR19855 | WD40 REPEAT PROTEIN 12, 37
 
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Ontology Term
PANTHER:PTHR19855:SF11 | RIBOSOME BIOGENESIS PROTEIN WDR12
 
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Ontology Term
Pfam:PF08154 | NLE (NUC135) domain
Description: This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1].
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Ontology Term
PANTHER:PTHR11699:SF18 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR13413 | YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP
 
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Ontology Term
PANTHER:PTHR18937:SF9 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2
 
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Ontology Term
Pfam:PF04982 | HPP family
Description: These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.
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Ontology Term
PANTHER:PTHR11654:SF59 | PROTEIN NRT1/ PTR FAMILY 2.10
 
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Ontology Term
PANTHER:PTHR22975 | UBIQUITIN SPECIFIC PROTEINASE
 
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Ontology Term
Pfam:PF04780 | Protein of unknown function (DUF629)
Description: This family represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
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Ontology Term
Pfam:PF04781 | Protein of unknown function (DUF627)
Description: This family represents the N-terminal region of several plant proteins of unknown function.
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Ontology Term
Pfam:PF09429 | WW domain binding protein 11
Description: The WW domain is a small protein module with a triple-stranded beta-sheet fold. This is a family of WW domain binding proteins.
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Ontology Term
PANTHER:PTHR23415 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
 
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Ontology Term
Pfam:PF03657 | UPF0113 PUA domain
Description: NULL
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Ontology Term
PANTHER:PTHR12363 | TRANSPORTIN 3 AND IMPORTIN 13
 
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Ontology Term
PANTHER:PTHR24351:SF13 | CHROMOSOMAL SERINE/THREONINE-PROTEIN KINASE JIL-1
 
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Ontology Term
PANTHER:PTHR31355 | MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1
 
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Ontology Term
PANTHER:PTHR12081:SF7 | TRANSCRIPTION FACTOR EFL-3
 
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Ontology Term
PANTHER:PTHR31760 | S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN
 
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Ontology Term
Pfam:PF02527 | rRNA small subunit methyltransferase G
Description: This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision [1]. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit [2, 3]. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA [4].
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Ontology Term
PANTHER:PTHR31760:SF0 | S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR12297 | HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED
 
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Ontology Term
PANTHER:PTHR12297:SF3 | HIG1 DOMAIN FAMILY MEMBER 2A
 
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Ontology Term
Pfam:PF04588 | Hypoxia induced protein conserved region
Description: This family is found in proteins thought to be involved in the response to hypoxia. Family members mostly come from diverse eukaryotic organisms however eubacterial members have been identified. This region is found at the N-terminus of the member proteins which are predicted to be transmembrane [1].
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Ontology Term
Pfam:PF14111 | Domain of unknown function (DUF4283)
Description: This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.
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Ontology Term
PANTHER:PTHR23058 | PEROXISOMAL MEMBRANE PROTEIN PEX14
 
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Ontology Term
PANTHER:PTHR23058:SF0 | PEROXISOMAL MEMBRANE PROTEIN PEX14
 
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Ontology Term
Pfam:PF04695 | Pex14 N-terminal domain
Description: Family of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N-terminus of the protein [1,2].
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Ontology Term
PANTHER:PTHR30525 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE
 
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Ontology Term
PANTHER:PTHR30525:SF0 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, CHLOROPLASTIC
 
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Ontology Term
Pfam:PF08436 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
Description: This domain is found to the C-terminus of Pfam:PF02670 domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases which catalyse the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH [1].
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Ontology Term
Pfam:PF13288 | DXP reductoisomerase C-terminal domain
Description: This is the C-terminal domain of the 1-deoxy-D-xylulose-5-phosphate reductoisomerase enzyme. This domain forms a left handed super-helix.
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Ontology Term
PANTHER:PTHR19854 | TRANSDUCIN BETA-LIKE 3
 
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Ontology Term
PANTHER:PTHR19854:SF22 | WD_REPEATS_REGION DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
Pfam:PF08625 | Utp13 specific WD40 associated domain
Description: Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
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Ontology Term
PANTHER:PTHR10093 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
 
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Ontology Term
Pfam:PF01592 | NifU-like N terminal domain
Description: This domain is found in NifU in combination with Pfam:PF01106. This domain is found on isolated in several bacterial species such as Swiss:O53156. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters [2].
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Ontology Term
PANTHER:PTHR12835 | BIOTIN PROTEIN LIGASE
 
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Ontology Term
PANTHER:PTHR17039 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10
 
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Ontology Term
Pfam:PF04006 | Mpp10 protein
Description: This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [3].
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Ontology Term
Pfam:PF07001 | BAT2 N-terminus
Description: This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [1].
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Ontology Term
Pfam:PF02727 | Copper amine oxidase, N2 domain
Description: This domain is the first or second structural domain in copper amine oxidases, it is known as the N2 domain. Its function is uncertain. The catalytic domain can be found in Pfam:PF01179. Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ).
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Ontology Term
PANTHER:PTHR20930 | OVARIAN CARCINOMA ANTIGEN CA125-RELATED
 
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Ontology Term
PANTHER:PTHR20930:SF0 | PROTEIN ILRUN
 
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Ontology Term
PANTHER:PTHR16509 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR24012:SF161 | 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC
 
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Ontology Term
PANTHER:PTHR11579:SF0 | PROTEIN-L-ISOASPARTATE(D-ASPARTATE) O-METHYLTRANSFERASE
 
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Ontology Term
Pfam:PF09415 | CENP-S associating Centromere protein X
Description: The centromere, essential for faithful chromosome segregation during mitosis, has a network of constitutive centromere-associated (CCAN) proteins associating with it during mitosis. So far in vertebrates at least 15 centromere proteins have been identified, which are divided into several subclasses based on functional and biochemical analyses. These provide a platform for the formation of a functional kinetochore during mitosis. CENP-S is one that does not associate with the CENP-H-containing complex but rather interacts with CENP-X to form a stable assembly of outer kinetochore proteins that functions downstream of other components of the CCAN. This complex may directly allow efficient and stable formation of the outer kinetochore on the CCAN platform.
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Ontology Term
PANTHER:PTHR19878 | AUTOPHAGY PROTEIN 16-LIKE
 
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Ontology Term
Pfam:PF10441 | Urb2/Npa2 family
Description: This family includes the Urb2 protein from yeast that are involved in ribosome biogenesis [1].
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Ontology Term
Pfam:PF10602 | 26S proteasome subunit RPN7
Description: RPN7 (known as the non ATPase regulatory subunit 6 in higher eukaryotes) is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae to be required for structural integrity [1]. The 26S proteasome is is involved in the ATP-dependent degradation of ubiquitinated proteins.
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Ontology Term
PANTHER:PTHR32116:SF3 | GALACTURONOSYLTRANSFERASE 3-RELATED
 
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Ontology Term
PANTHER:PTHR14503 | MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER
 
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Ontology Term
Pfam:PF00468 | Ribosomal protein L34
Description: NULL
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Ontology Term
PANTHER:PTHR24031:SF68 | ATP-DEPENDENT RNA HELICASE DDX51
 
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Ontology Term
PANTHER:PTHR21631 | ISOCITRATE LYASE/MALATE SYNTHASE
 
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Ontology Term
PANTHER:PTHR21631:SF1 | MALATE SYNTHASE
 
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Ontology Term
Pfam:PF01274 | Malate synthase
Description: NULL
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Ontology Term
PANTHER:PTHR10894 | NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
 
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Ontology Term
Pfam:PF01798 | snoRNA binding domain, fibrillarin
Description: This family consists of various Pre RNA processing ribonucleoproteins. The function of the aligned region is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Nop5p (Nop58p) Swiss:Q12499 from yeast is the protein component of a ribonucleoprotein required for pre-18s rRNA processing and is suggested to function with Nop1p in a snoRNA complex [1]. Nop56p Swiss:O00567 and Nop5p interact with Nop1p and are required for ribosome biogenesis [2]. Prp31p Swiss:p49704 is required for pre-mRNA splicing in S. cerevisiae [3]. Fibrillarin, or Nop, is the catalytic subunit responsible for the methyl transfer reaction of the site-specific 2'-O-methylation of ribosomal and spliceosomal RNA [4].
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Ontology Term
Pfam:PF08156 | NOP5NT (NUC127) domain
Description: This N terminal domain is found in RNA-binding proteins of the NOP5 family [1].
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Ontology Term
PANTHER:PTHR12961 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2
 
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Ontology Term
PANTHER:PTHR12961:SF0 | CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 2
 
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Ontology Term
Pfam:PF12022 | COG complex component, COG2, C-terminal
Description: The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function [1]. It is necessary for retrograde trafficking in the Golgi apparatus and for protein glycosylation [2]. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins. In Arabidopsis, COG2 forms a complex with FPP3/VETH1 and FPP2/VETH2 and ensures the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition [2].
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Ontology Term
Pfam:PF06148 | COG (conserved oligomeric Golgi) complex component, COG2
Description: The COG complex comprises eight proteins COG1-8. The COG complex plays critical roles in Golgi structure and function [1]. The proposed function of the complex is to mediate the initial physical contact between transport vesicles and their membrane targets. A comparable role in tethering vesicles has been suggested for at least six additional large multisubunit complexes, including the exocyst, a complex that mediates trafficking to the plasma membrane. COG2 structure reveals a six-helix bundle with few conserved surface features but a general resemblance to recently determined crystal structures of four different exocyst subunits. These bundles inCOG2 may act as platforms for interaction with other trafficing proteins including SNAREs (soluble N-ethylmaleimide factor attachment protein receptors) and Rabs [2].
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Ontology Term
PANTHER:PTHR11910 | ATP SYNTHASE DELTA CHAIN
 
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Ontology Term
PANTHER:PTHR10953:SF9 | UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 5
 
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Ontology Term
Pfam:PF00899 | ThiF family
Description: This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3].
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Ontology Term
PANTHER:PTHR11086 | DEOXYCYTIDYLATE DEAMINASE-RELATED
 
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Ontology Term
PANTHER:PTHR13121 | GPI TRANSAMIDASE COMPONENT PIG-U
 
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Ontology Term
PANTHER:PTHR13121:SF0 | PHOSPHATIDYLINOSITOL GLYCAN ANCHOR BIOSYNTHESIS CLASS U PROTEIN
 
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Ontology Term
Pfam:PF06728 | GPI transamidase subunit PIG-U
Description: Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the carboxyl-terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [1].
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Ontology Term
PANTHER:PTHR23322 | FAS-ASSOCIATED PROTEIN
 
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Ontology Term
PANTHER:PTHR23322:SF3 | ARA4-INTERACTING PROTEIN
 
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Ontology Term
Pfam:PF14555 | UBA-like domain
Description: NULL
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Ontology Term
PANTHER:PTHR13906 | PORCUPINE
 
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Ontology Term
PANTHER:PTHR13906:SF4 | OYSGEDART, ISOFORM A
 
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