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Search results 2301 to 2400 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR12765:SF5 | PROTEIN RED
 
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Ontology Term
Pfam:PF07807 | RED-like protein C-terminal region
Description: This family contains sequences that are similar to the C-terminal region of Red protein (Swiss:Q13123). This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements [1]. The region in question has several conserved NLS sequences [1]. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [1].
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Ontology Term
Pfam:PF07808 | RED-like protein N-terminal region
Description: This family contains sequences that are similar to the N-terminal region of Red protein (Swiss:Q13123). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements [1]. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [1], suggesting that these proteins are expressed in the nucleus [1]. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently [1].
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Ontology Term
PANTHER:PTHR11200:SF9 | POLYPHOSPHOINOSITIDE PHOSPHATASE
 
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Ontology Term
PANTHER:PTHR12526:SF27 | SUCROSE SYNTHASE 2-RELATED
 
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Ontology Term
Pfam:PF00862 | Sucrose synthase
Description: Sucrose synthases catalyse the synthesis of sucrose from UDP-glucose and fructose. This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family Pfam:PF00534.
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Ontology Term
PANTHER:PTHR31339 | PECTIN LYASE-RELATED
 
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Ontology Term
PANTHER:PTHR31339:SF0 | PECTIN LYASE-LIKE SUPERFAMILY PROTEIN
 
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Ontology Term
Pfam:PF09425 | Jas motif
Description: This entry represents the Jas motif. The Jas motif can bind to jasmonate as a partially unwound helix. It can also bind to Myc proteins which are key mediators of josmonate signalling in plants [1].
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Ontology Term
PANTHER:PTHR10772 | 10 KDA HEAT SHOCK PROTEIN
 
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Ontology Term
PANTHER:PTHR10772:SF0 | 10 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF00166 | Chaperonin 10 Kd subunit
Description: This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1].
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Ontology Term
PANTHER:PTHR24031:SF89 | ATP-DEPENDENT RNA HELICASE DDX31-RELATED
 
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Ontology Term
Pfam:PF13959 | Domain of unknown function (DUF4217)
Description: This short domain is found at the C-terminus of many helicase proteins.
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Ontology Term
Pfam:PF00059 | Lectin C-type domain
Description: This family includes both long and short form C-type
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Ontology Term
PANTHER:PTHR23423 | ORGANIC SOLUTE TRANSPORTER-RELATED
 
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Ontology Term
Pfam:PF03619 | Organic solute transporter Ostalpha
Description: This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters [1]. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death [2].
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Ontology Term
PANTHER:PTHR10578 | S -2-HYDROXY-ACID OXIDASE-RELATED
 
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Ontology Term
Pfam:PF00631 | GGL domain
Description: G-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins [1]. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA [2]. G-gamma likely shares a common origin with the helical N-terminal unit of G-beta [2]. All organisms that posses a G-beta possess a G-gamma [2].
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Ontology Term
PANTHER:PTHR12411 | CYSTEINE PROTEASE FAMILY C1-RELATED
 
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Ontology Term
Pfam:PF00112 | Papain family cysteine protease
Description: NULL
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Ontology Term
Pfam:PF08246 | Cathepsin propeptide inhibitor domain (I29)
Description: This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin Swiss:Q70SU8. This family is classified as I29 by MEROPS.
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Ontology Term
PANTHER:PTHR31592 | TRANSMEMBRANE PROTEIN 192
 
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Ontology Term
PANTHER:PTHR31592:SF1 | TRANSMEMBRANE PROTEIN 192
 
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Ontology Term
Pfam:PF14802 | TMEM192 family
Description: The function of this family of transmembrane proteins is unknown. In vertebrates, proteins in this family are located in the lysosomal membrane and late endosome [1-2]. In Arabidopsis, a member of this family has been found to weakly interact with FRIGIDA, a determinant of flowering time [3].
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Ontology Term
PANTHER:PTHR12241 | TUBULIN POLYGLUTAMYLASE
 
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Ontology Term
PANTHER:PTHR12241:SF13 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12
 
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Ontology Term
Pfam:PF03133 | Tubulin-tyrosine ligase family
Description: Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) [2]. The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness [3]. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [4]. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain [6].
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Ontology Term
PANTHER:PTHR15288 | DENN DOMAIN-CONTAINING PROTEIN 2
 
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Ontology Term
Pfam:PF02141 | DENN (AEX-3) domain
Description: DENN (after differentially expressed in neoplastic vs normal cells) is a domain which occurs in several proteins involved in Rab- mediated processes or regulation of MAPK signalling pathways [1].
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Ontology Term
Pfam:PF03456 | uDENN domain
Description: This region is always found associated with Pfam:PF02141. It is predicted to form an all beta domain [1].
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Ontology Term
Pfam:PF07876 | Stress responsive A/B Barrel Domain
Description: The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera ([1]). It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Swiss:Q9ZA13; [2]). Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved (Swiss:Q9LUV2) and the domain forms an a/b barrel dimer ([3]). Although there is a clear duplication within the domain it is not obviously detectable in the sequence.
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Ontology Term
Pfam:PF07011 | Early Flowering 4 domain
Description: This domain forms an alpha-helical homodimer in ELF4 proteins. Protein EARLY FLOWERING 4 (Elf4) is a component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles [1, 2].
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Ontology Term
Pfam:PF04057 | Replication factor-A protein 1, N-terminal domain
Description: NULL
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Ontology Term
Pfam:PF06596 | Photosystem II reaction centre X protein (PsbX)
Description: This family consists of several photosystem II reaction centre X protein (PsbX) sequences from both prokaryotes and eukaryotes.
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Ontology Term
PANTHER:PTHR31618 | MECHANOSENSITIVE ION CHANNEL PROTEIN 5
 
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Ontology Term
Pfam:PF00924 | Mechanosensitive ion channel
Description: Two members of this protein family: Swiss:Q57634 and Swiss:Q58543 of M. jannaschii have been functionally characterised. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.
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Ontology Term
PANTHER:PTHR10476:SF4 | CHARGED MULTIVESICULAR BODY PROTEIN 2A
 
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Ontology Term
PANTHER:PTHR12632 | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED
 
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Ontology Term
PANTHER:PTHR12632:SF6 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
 
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Ontology Term
Pfam:PF02045 | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Description: NULL
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Ontology Term
PANTHER:PTHR31201 | OS01G0585100 PROTEIN
 
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Ontology Term
PANTHER:PTHR31201:SF1 | GLYCEROPHOSPHOCHOLINE ACYLTRANSFERASE 1
 
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Ontology Term
Pfam:PF10998 | Protein of unknown function (DUF2838)
Description: This bacterial family of proteins has no known function.
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Ontology Term
PANTHER:PTHR13047 | PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT
 
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Ontology Term
Pfam:PF13869 | Nucleotide hydrolase
Description: Nudix hydrolases are found in all classes of organism and hydrolyse a wide range of organic pyrophosphates, including nucleoside di- and triphosphates, di-nucleoside and diphospho-inositol polyphosphates, nucleotide sugars and RNA caps, with varying degrees of substrate specificity.
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Ontology Term
PANTHER:PTHR24360 | MAPKK/MEKK
 
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Ontology Term
PANTHER:PTHR31115 | OS05G0107300 PROTEIN
 
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Ontology Term
PANTHER:PTHR31115:SF0 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR24358 | SERINE/THREONINE-PROTEIN KINASE 38
 
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Ontology Term
PANTHER:PTHR24358:SF0 | SERINE/THREONINE-PROTEIN KINASE TRICORNER
 
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Ontology Term
Pfam:PF00433 | Protein kinase C terminal domain
Description: NULL
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Ontology Term
Pfam:PF05834 | Lycopene cyclase protein
Description: This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [1,2].
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Ontology Term
PANTHER:PTHR20856:SF7 | DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
 
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Ontology Term
Pfam:PF04560 | RNA polymerase Rpb2, domain 7
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp [1]. The clamp region (C-terminal) contains a zinc-binding motif [1]. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription [1].
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Ontology Term
Pfam:PF04561 | RNA polymerase Rpb2, domain 2
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain [1]. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).
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Ontology Term
Pfam:PF04563 | RNA polymerase beta subunit
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain [1]. The other lobe (Pfam:PF04561) is nested within this domain.
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Ontology Term
Pfam:PF04565 | RNA polymerase Rpb2, domain 3
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site [1].
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Ontology Term
Pfam:PF04566 | RNA polymerase Rpb2, domain 4
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain [1].
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Ontology Term
Pfam:PF04567 | RNA polymerase Rpb2, domain 5
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain [1].
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Ontology Term
PANTHER:PTHR11377 | N-MYRISTOYL TRANSFERASE
 
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Ontology Term
Pfam:PF02799 | Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
Description: The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold.
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Ontology Term
PANTHER:PTHR10408 | STEROL O-ACYLTRANSFERASE
 
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Ontology Term
Pfam:PF03062 | MBOAT, membrane-bound O-acyltransferase family
Description: The MBOAT (membrane bound O-acyl transferase) family of membrane proteins contains a variety of acyltransferase enzymes. A conserved histidine has been suggested to be the active site residue [1].
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Ontology Term
PANTHER:PTHR31250 | IQ DOMAIN-CONTAINING PROTEIN IQM3
 
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Ontology Term
PANTHER:PTHR12919 | 30S RIBOSOMAL PROTEIN S16
 
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Ontology Term
Pfam:PF00886 | Ribosomal protein S16
Description: NULL
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Ontology Term
PANTHER:PTHR22942 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR22942:SF1 | MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG
 
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Ontology Term
Pfam:PF00154 | recA bacterial DNA recombination protein
Description: RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination [1].
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Ontology Term
PANTHER:PTHR12789 | DENSITY-REGULATED PROTEIN HOMOLOG
 
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Ontology Term
Pfam:PF01253 | Translation initiation factor SUI1
Description: NULL
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Ontology Term
PANTHER:PTHR10336 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
 
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Ontology Term
Pfam:PF00388 | Phosphatidylinositol-specific phospholipase C, X domain
Description: This associates with Pfam:PF00387 to form a single structural unit.
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Ontology Term
Pfam:PF05915 | Transmembrane proteins 230/134
Description: This family consists of the eukaryotic transmembrane proteins 230 and 134 (TMEM230 and 134). TMEM134 function is unknown, but it has been shown to interact with E virus ORF2 [1]. TMEM 230 is involved in trafficking and recycling of synaptic vesicles [2].
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Ontology Term
PANTHER:PTHR31752 | AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED
 
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Ontology Term
PANTHER:PTHR11524 | 60S RIBOSOMAL PROTEIN L7
 
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Ontology Term
Pfam:PF00327 | Ribosomal protein L30p/L7e
Description: This family includes prokaryotic L30 and eukaryotic L7.
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Ontology Term
PANTHER:PTHR21481 | UNCHARACTERIZED
 
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Ontology Term
PANTHER:PTHR21481:SF0 | PROTEIN CLEC16A
 
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Ontology Term
Pfam:PF09758 | Uncharacterised conserved protein
Description: This entry represents an N-terminal region of approximately 150 residues of a family of proteins of unknown function. It contains a highly conserved FPL motif.
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Ontology Term
PANTHER:PTHR11638:SF69 | CLP AMINO TERMINAL DOMAIN-CONTAINING PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR10459 | DNA LIGASE
 
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Ontology Term
PANTHER:PTHR10459:SF7 | DNA LIGASE 4
 
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Ontology Term
Pfam:PF01068 | ATP dependent DNA ligase domain
Description: This domain belongs to a more diverse superfamily, including Pfam:PF01331 and Pfam:PF01653 [3].
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Ontology Term
Pfam:PF04679 | ATP dependent DNA ligase C terminal region
Description: This region is found in many but not all ATP-dependent DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute part of the catalytic core of ATP dependent DNA ligase [1].
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Ontology Term
Pfam:PF04675 | DNA ligase N terminus
Description: This region is found in many but not all ATP-dependent DNA ligase enzymes (EC:6.5.1.1). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (Swiss:P18858), and in Saccharomyces cerevisiae (Swiss:P04819), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In vaccinia virus (Swiss:P16272) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation [1].
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Ontology Term
PANTHER:PTHR22951 | CLATHRIN ASSEMBLY PROTEIN
 
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Ontology Term
Pfam:PF07651 | ANTH domain
Description: AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [1,2].
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Ontology Term
PANTHER:PTHR22957 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
 
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Ontology Term
PANTHER:PTHR22957:SF24 | SUBFAMILY NOT NAMED
 
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Ontology Term
Pfam:PF00566 | Rab-GTPase-TBC domain
Description: Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.
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Ontology Term
PANTHER:PTHR14440 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
 
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Ontology Term
Pfam:PF06870 | A49-like RNA polymerase I associated factor
Description: Saccharomyces cerevisiae A49 is a specific subunit associated with RNA polymerase I (Pol I) in eukaryotes. Pol I maintains transcription activities in A49 deletion mutants. However, such mutants are deficient in transcription activity at low temperatures. Deletion analysis of the fusion yeast homolog indicate that only the C-terminal two thirds are required for function. Transcript analysis has demonstrated that A49 is maximising transcription of ribosomal DNA [1].
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Ontology Term
PANTHER:PTHR13266 | PROTEASOME INHIBITOR
 
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Ontology Term
Pfam:PF04674 | Phosphate-induced protein 1 conserved region
Description: Family of conserved plant proteins. Conserved region identified in a phosphate-induced protein of unknown function [1].
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Ontology Term
Pfam:PF11566 | PI31 proteasome regulator N-terminal
Description: PI31 is a regulatory subunit of the immuno-proteasome which is an inhibitor of the 20 S proteasome in vitro.PI31 is also an F-box protein Fbxo7.Skp1 binding partner which requires an N terminal FP domain in both proteins for the interaction to occur via the FP beta sheets. The structure of PI31 FP domain contains a novel alpha/beta-fold and two intermolecular contact surfaces [1]. This is the N-terminal domain of the members.
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Ontology Term
Pfam:PF06280 | Fn3-like domain
Description: Fn3_5 is an fn3-like domain which is frequently found as the first of three on streptococcal C5a peptidase (SCP), a highly specific protease and adhesin/invasin. The family is found in conjunction with Pfam:PF00082, Pfam:PF02225 and Pfam:PF00746 [1].
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Ontology Term
Pfam:PF07333 | S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Description: This family consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein [1].
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Ontology Term
PANTHER:PTHR12537 | RNA BINDING PROTEIN PUMILIO-RELATED
 
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