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Search results 3501 to 3600 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
Pfam:PF11935 | Symplekin/PTA1 N-terminal
Description: This is the N-terminal domain found in the symplekin protein from animals and PTA1 protein from budding yeasts and is typically between 239 to 261 amino acids in length. Symplekin is a scaffold protein that functions as a component of a multimolecular complex involved in histone mRNA 3'-end processing [1,2]. PTA1 is involved in pre-tRNA processing. PTA1 is a subunit of the cleavage and polyadenylation factor (CPF), which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB [3]. This domain has the ARM or HEAT fold, with seven pairs of antiparallel alpha-helices arranged in the shape of an arc. It is important for interaction with Ssu72 and stimulates Ssu72 C-terminal domain phosphatase activity in vitro [4].
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Ontology Term
Pfam:PF04488 | Glycosyltransferase sugar-binding region containing DXD motif
Description: The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [1].
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Ontology Term
PANTHER:PTHR10121 | COATOMER SUBUNIT DELTA
 
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Ontology Term
Pfam:PF00542 | Ribosomal protein L7/L12 C-terminal domain
Description: NULL
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Ontology Term
PANTHER:PTHR13312 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE
 
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Ontology Term
PANTHER:PTHR13312:SF0 | UBIQUITIN THIOESTERASE OTU1
 
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Ontology Term
Pfam:PF02338 | OTU-like cysteine protease
Description: This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases.
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Ontology Term
Pfam:PF00335 | Tetraspanin family
Description: NULL
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Ontology Term
PANTHER:PTHR10898 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9
 
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Ontology Term
PANTHER:PTHR10285:SF46 | URACIL PHOSPHORIBOSYLTRANSFERASE, CHLOROPLASTIC
 
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Ontology Term
Pfam:PF14681 | Uracil phosphoribosyltransferase
Description: This family includes the enzyme uracil phosphoribosyltransferase (EC:2.4.2.9). This enzyme catalyzes the first step of UMP biosynthesis.
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Ontology Term
PANTHER:PTHR24348 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
 
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Ontology Term
Pfam:PF01194 | RNA polymerases N / 8 kDa subunit
Description: NULL
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Ontology Term
Pfam:PF01809 | Putative membrane protein insertion efficiency factor
Description: This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting [1].
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Ontology Term
PANTHER:PTHR19961 | FIMBRIN/PLASTIN
 
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Ontology Term
PANTHER:PTHR14552 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR14552:SF2 | DCTP PYROPHOSPHATASE 1
 
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Ontology Term
Pfam:PF03819 | MazG nucleotide pyrophosphohydrolase domain
Description: This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in some proteins as well as associated with Pfam:PF00590. This domain is clearly related to Pfam:PF01503 another pyrophosphohydrolase involved in histidine biosynthesis. This family may be structurally related to the NUDIX domain Pfam:PF00293 (Bateman A pers. obs.).
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Ontology Term
Pfam:PF14159 | CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Description: This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids [1]. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localised in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.
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Ontology Term
Pfam:PF03017 | TNP1/EN/SPM transposase
Description: NULL
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Ontology Term
PANTHER:PTHR31871 | OS02G0137100 PROTEIN
 
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Ontology Term
Pfam:PF09713 | Plant protein 1589 of unknown function (A_thal_3526)
Description: This plant-specific family of proteins is defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown.
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Ontology Term
Pfam:PF10230 | Lipid-droplet associated hydrolase
Description: This family of proteins is conserved from plants to humans. The function is as a lipid-droplet hydrolase. Human LDAH plays a role in cholesterol homeostasis [3].
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Ontology Term
PANTHER:PTHR21493:SF9 | GOLGI TRANSPORT PROTEIN 1-RELATED
 
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Ontology Term
Pfam:PF14108 | ABA DEFICIENT 4-like
Description: This family of proteins is found in bacteria and plants. It includes abscisic acid (ABA)-deficient 4 protein (ABA4) from Arabidopsis thaliana, which has a role in neoxanthin synthesis [1] and may be important for the de novo ABA synthesis specifically during dehydration [1].
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Ontology Term
PANTHER:PTHR32044 | GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9
 
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Ontology Term
Pfam:PF13641 | Glycosyltransferase like family 2
Description: Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis [1][2].
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Ontology Term
Pfam:PF13632 | Glycosyl transferase family group 2
Description: Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [1][2].
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Ontology Term
PANTHER:PTHR24360:SF21 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1
 
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Ontology Term
PANTHER:PTHR14107 | WD REPEAT PROTEIN
 
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Ontology Term
PANTHER:PTHR11109:SF0 | GTP CYCLOHYDROLASE 1
 
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Ontology Term
PANTHER:PTHR10953 | UBIQUITIN-ACTIVATING ENZYME E1
 
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Ontology Term
PANTHER:PTHR10953:SF4 | UBIQUITIN-ACTIVATING ENZYME E1
 
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Ontology Term
PANTHER:PTHR11760 | 30S/40S RIBOSOMAL PROTEIN S3
 
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Ontology Term
Pfam:PF00189 | Ribosomal protein S3, C-terminal domain
Description: This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.
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Ontology Term
Pfam:PF00146 | NADH dehydrogenase
Description: NULL
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Ontology Term
Pfam:PF13237 | 4Fe-4S dicluster domain
Description: This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
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Ontology Term
PANTHER:PTHR30071 | HEME EXPORTER PROTEIN C
 
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Ontology Term
PANTHER:PTHR30071:SF1 | CYTOCHROME B/B6 PROTEIN-RELATED
 
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Ontology Term
Pfam:PF01578 | Cytochrome C assembly protein
Description: This family consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium[3], CcmC from E. coli and Paracoccus denitrificans [2,1] and orf240 from wheat mitochondria [4]. The members of this family are probably integral membrane proteins with six predicted transmembrane helices. It has been proposed that members of this family comprise a membrane component of an ABC (ATP binding cassette) transporter complex. It is also proposed that this transporter is necessary for transport of some component needed for cytochrome c assembly. One member CycK contains a putative heme-binding motif [3], orf240 also contains a putative heme-binding motif and is a proposed ABC transporter with c-type heme as its proposed substrate [4]. However it seems unlikely that all members of this family transport heme nor c-type apocytochromes because CcmC in the putative CcmABC transporter transports neither [1]. CcmF forms a working module with CcmH and CcmI, CcmFHI, and itself is unlikely to bind haem directly [5].
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Ontology Term
PANTHER:PTHR11205 | RIBOSOMAL PROTEIN S7
 
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Ontology Term
Pfam:PF00177 | Ribosomal protein S7p/S5e
Description: This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.
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Ontology Term
PANTHER:PTHR11993 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT
 
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Ontology Term
PANTHER:PTHR31442 | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR11141 | PROTEIN TRANSPORT PROTEIN SEC23
 
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Ontology Term
Pfam:PF04815 | Sec23/Sec24 helical domain
Description: COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices.
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Ontology Term
Pfam:PF04810 | Sec23/Sec24 zinc finger
Description: COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain.
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Ontology Term
Pfam:PF04811 | Sec23/Sec24 trunk domain
Description: COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface.
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Ontology Term
PANTHER:PTHR11254:SF73 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12
 
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Ontology Term
PANTHER:PTHR10366:SF95 | ROSSMANN-FOLD NAD(P)-BINDING DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
PANTHER:PTHR10836 | GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
 
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Ontology Term
Pfam:PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Description: GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.
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Ontology Term
Pfam:PF00044 | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Description: GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
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Ontology Term
PANTHER:PTHR31956 | NON-SPECIFIC PHOSPHOLIPASE C4-RELATED
 
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Ontology Term
Pfam:PF04185 | Phosphoesterase family
Description: This family includes both bacterial phospholipase C enzymes EC:3.1.4.3, but also eukaryotic acid phosphatases EC:3.1.3.2.
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Ontology Term
PANTHER:PTHR10395 | URICASE AND TRANSTHYRETIN-RELATED
 
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Ontology Term
PANTHER:PTHR10395:SF7 | 5-HYDROXYISOURATE HYDROLASE
 
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Ontology Term
Pfam:PF00576 | HIUase/Transthyretin family
Description: This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [2,3]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [4]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence.
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Ontology Term
Pfam:PF09349 | OHCU decarboxylase
Description: The proteins in this family are OHCU decarboxylase - enzymes of the purine catabolism that catalyse the conversion of OHCU into S(+)-allantoin [1]. This is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (Pfam:PF01014) and step two is catalysed by HIUases (Pfam:PF00576).
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Ontology Term
PANTHER:PTHR22812 | CHROMOBOX PROTEIN
 
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Ontology Term
PANTHER:PTHR31149 | EXPRESSED PROTEIN
 
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Ontology Term
PANTHER:PTHR32319 | BACTERIAL HEMOLYSIN-LIKE PROTEIN
 
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Ontology Term
Pfam:PF01728 | FtsJ-like methyltransferase
Description: This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping [2].
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Ontology Term
PANTHER:PTHR14957 | UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10
 
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Ontology Term
PANTHER:PTHR14957:SF1 | UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10
 
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Ontology Term
Pfam:PF03987 | Autophagocytosis associated protein, active-site domain
Description: Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [2].
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Ontology Term
PANTHER:PTHR24067:SF0 | UBIQUITIN-CONJUGATING ENZYME E2 H
 
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Ontology Term
Pfam:PF08777 | RNA binding motif
Description: This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif [1].
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Ontology Term
PANTHER:PTHR11695:SF5 | PROSTAGLANDIN REDUCTASE 1
 
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Ontology Term
PANTHER:PTHR21243 | PROTEIN SCAI
 
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Ontology Term
Pfam:PF12070 | Protein SCAI
Description: SCAI is a transcriptional cofactor and tumour suppressor that suppresses MKL1-induced SRF transcriptional activity. It may function in the RHOA-DIAPH1 signal transduction pathway and regulate cell migration through transcriptional regulation of ITGB1 [1].
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Ontology Term
PANTHER:PTHR10119 | GLUTAMYL/GLUTAMINYL-TRNA SYNTHETASE
 
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Ontology Term
Pfam:PF00749 | tRNA synthetases class I (E and Q), catalytic domain
Description: Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
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Ontology Term
PANTHER:PTHR11639 | S100 CALCIUM-BINDING PROTEIN
 
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Ontology Term
PANTHER:PTHR21576 | UNCHARACTERIZED NODULIN-LIKE PROTEIN
 
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Ontology Term
PANTHER:PTHR21576:SF7 | MAJOR FACILITATOR SUPERFAMILY PROTEIN
 
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Ontology Term
Pfam:PF03209 | PUCC protein
Description: This protein is required for high-level transcription of the PUC operon.
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Ontology Term
Pfam:PF06813 | Nodulin-like
Description: This family represents a conserved region within plant nodulin-like proteins.
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Ontology Term
Pfam:PF02390 | Putative methyltransferase
Description: This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
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Ontology Term
PANTHER:PTHR21192 | NUCLEAR PROTEIN E3-3
 
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Ontology Term
Pfam:PF04430 | Protein of unknown function (DUF498/DUF598)
Description: This is a large family of uncharacterised proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid [1].
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Ontology Term
PANTHER:PTHR10210 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR10210:SF32 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE
 
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Ontology Term
Pfam:PF14572 | Phosphoribosyl synthetase-associated domain
Description: This family includes several examples of enzymes from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
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Ontology Term
PANTHER:PTHR11863 | STEROL DESATURASE
 
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Ontology Term
Pfam:PF12076 | WAX2 C-terminal domain
Description: This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with Pfam:PF04116. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [1].
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Ontology Term
PANTHER:PTHR12507 | REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED
 
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Ontology Term
Pfam:PF08737 | Rgp1
Description: Rgp1 forms heterodimer with Ric1 (Pfam:PF07064) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [1].
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Ontology Term
PANTHER:PTHR23359 | NUCLEOTIDE KINASE
 
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Ontology Term
Pfam:PF00406 | Adenylate kinase
Description: NULL
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Ontology Term
PANTHER:PTHR13914 | PROLINE OXIDASE
 
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Ontology Term
PANTHER:PTHR13914:SF0 | PROLINE DEHYDROGENASE 1, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF01619 | Proline dehydrogenase
Description: NULL
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Ontology Term
Pfam:PF05687 | BES1/BZR1 plant transcription factor, N-terminal
Description: This family consists of the N terminal regions of several plant transcription factors. It is classified as BES1/BZR1, a plant-specific transcription factor that cooperates with transcription factors such as BIM1 to regulate brassinosteroid-induced genes [1].
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Ontology Term
Pfam:PF12600 | Protein of unknown function (DUF3769)
Description: This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 560 and 931 amino acids in length.
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Ontology Term
PANTHER:PTHR23323 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
 
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Ontology Term
PANTHER:PTHR23323:SF24 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG
 
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Ontology Term
Pfam:PF12451 | Vacuolar protein sorting protein 11 C terminal
Description: This domain family is found in eukaryotes, and is approximately 50 amino acids in length. Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion.
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Ontology Term
Pfam:PF12047 | Cytosine specific DNA methyltransferase replication foci domain
Description: This domain is part of a cytosine specific DNA methyltransferase enzyme. It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties. [1]
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Ontology Term
Pfam:PF00536 | SAM domain (Sterile alpha motif)
Description: It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains.
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