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Search results 901 to 1000 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0000856 | conserved
Description: A region that is similar or identical across more than one species.
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SO Term
SO:0000859 | paralogous
Description: An attribute describing a kind of homology where divergence occurred after a duplication event.
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SO Term
SO:0000854 | paralogous_region
Description: A homologous_region that is paralogous to another region.
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SO Term
SO:0000855 | orthologous_region
Description: A homologous_region that is orthologous to another region.
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SO Term
SO:0000858 | orthologous
Description: An attribute describing a kind of homology where divergence occurred after a speciation event.
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SO Term
SO:0000860 | syntenic
Description: Attribute describing sequence regions occurring in same order on chromosome of different species.
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SO Term
SO:0000861 | capped_primary_transcript
Description: A primary transcript that is capped.
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SO Term
SO:0000862 | capped_mRNA
Description: An mRNA that is capped.
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SO Term
SO:0000872 | trans_spliced_mRNA
Description: An mRNA that is trans-spliced.
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SO Term
SO:0000977 | anchor_binding_site
 
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SO Term
SO:0000874 | edited_transcript_by_A_to_I_substitution
Description: A transcript that has been edited by A to I substitution.
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SO Term
SO:0000877 | alternatively_spliced
Description: An attribute describing a situation where a gene may encode for more than 1 transcript.
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SO Term
SO:0000882 | codon_redefined
Description: An attribute describing the alteration of codon meaning.
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SO Term
SO:0000888 | maternally_imprinted_gene
Description: A gene that is maternally_imprinted.
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SO Term
SO:0000889 | paternally_imprinted_gene
Description: A gene that is paternally imprinted.
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SO Term
SO:0000890 | post_translationally_regulated_gene
Description: A gene that is post translationally regulated.
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SO Term
SO:0000891 | negatively_autoregulated_gene
Description: A gene that is negatively autoreguated.
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SO Term
SO:0000892 | positively_autoregulated_gene
Description: A gene that is positively autoregulated.
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SO Term
SO:0000896 | translationally_regulated_gene
Description: A gene that is translationally regulated.
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SO Term
SO:0000897 | allelically_excluded_gene
Description: A gene that is allelically_excluded.
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SO Term
SO:0000906 | independently_known
Description: Attribute to describe a feature that is independently known - not predicted.
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SO Term
SO:0000907 | supported_by_sequence_similarity
Description: An attribute to describe a feature that has been predicted using sequence similarity techniques.
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SO Term
SO:0000908 | supported_by_domain_match
Description: An attribute to describe a feature that has been predicted using sequence similarity of a known domain.
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SO Term
SO:0000909 | supported_by_EST_or_cDNA
Description: An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data.
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SO Term
SO:0000910 | orphan
Description: A gene whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence.
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SO Term
SO:0000911 | predicted_by_ab_initio_computation
Description: An attribute describing a feature that is predicted by a computer program that did not rely on sequence similarity.
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SO Term
SO:0001128 | polypeptide_turn_motif
Description: A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues.
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SO Term
SO:0000912 | asx_turn
Description: A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2).
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SO Term
SO:0001078 | polypeptide_secondary_structure
Description: A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain.
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SO Term
SO:0000913 | cloned_cDNA_insert
Description: A clone insert made from cDNA.
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SO Term
SO:0000914 | cloned_genomic_insert
Description: A clone insert made from genomic DNA.
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SO Term
SO:0000915 | engineered_insert
Description: A clone insert that is engineered.
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SO Term
SO:0000929 | edited_mRNA
Description: An mRNA that is edited.
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SO Term
SO:0000930 | guide_RNA_region
Description: A region of guide RNA.
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SO Term
SO:0000931 | anchor_region
Description: A region of a guide_RNA that base-pairs to a target mRNA.
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SO Term
SO:0000932 | pre_edited_mRNA
Description: A primary transcript that, at least in part, encodes one or more proteins that has not been edited.
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SO Term
SO:0000933 | intermediate
Description: An attribute to describe a feature between stages of processing.
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SO Term
SO:0001655 | nucleotide_binding_site
Description: A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues.
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SO Term
SO:0000934 | miRNA_target_site
Description: A miRNA target site is a binding site where the molecule is a micro RNA.
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SO Term
SO:0000935 | edited_CDS
Description: A CDS that is edited.
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SO Term
SO:0000941 | recombinationally_rearranged_vertebrate_immune_system_gene
Description: A recombinationally rearranged gene of the vertebrate immune system.
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SO Term
SO:0001042 | phage_sequence
Description: The nucleotide sequence of a virus that infects bacteria.
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SO Term
SO:0000942 | attP_site
Description: An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome.
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SO Term
SO:0001041 | viral_sequence
Description: The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell.
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SO Term
SO:0000943 | attB_site
Description: An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site.
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SO Term
SO:0000944 | attL_site
Description: A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site.
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SO Term
SO:0000945 | attR_site
Description: A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site.
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SO Term
SO:0000949 | dif_site
Description: A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase.
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SO Term
SO:0000950 | attC_site
Description: An attC site is a sequence required for the integration of a DNA of an integron.
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SO Term
SO:0000952 | oriV
Description: An origin of vegetative replication in plasmids and phages.
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SO Term
SO:0000953 | oriC
Description: An origin of bacterial chromosome replication.
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SO Term
SO:0000954 | DNA_chromosome
Description: Structural unit composed of a self-replicating, DNA molecule.
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SO Term
SO:0000955 | double_stranded_DNA_chromosome
Description: Structural unit composed of a self-replicating, double-stranded DNA molecule.
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SO Term
SO:0000985 | double
Description: When a nucleotide polymer has two strands that are reverse-complement to one another and pair together.
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SO Term
SO:0000983 | strand_attribute
Description: The attribute of how many strands are present in a nucleotide polymer.
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SO Term
SO:0000956 | single_stranded_DNA_chromosome
Description: Structural unit composed of a self-replicating, single-stranded DNA molecule.
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SO Term
SO:0000984 | single
Description: When a nucleotide polymer has only one strand.
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SO Term
SO:0000957 | linear_double_stranded_DNA_chromosome
Description: Structural unit composed of a self-replicating, double-stranded, linear DNA molecule.
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SO Term
SO:0000987 | linear
Description: A quality of a nucleotide polymer that has a 3'-terminal residue and a 5'-terminal residue.
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SO Term
SO:0000958 | circular_double_stranded_DNA_chromosome
Description: Structural unit composed of a self-replicating, double-stranded, circular DNA molecule.
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SO Term
SO:0000959 | linear_single_stranded_DNA_chromosome
Description: Structural unit composed of a self-replicating, single-stranded, linear DNA molecule.
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SO Term
SO:0000960 | circular_single_stranded_DNA_chromosome
Description: Structural unit composed of a self-replicating, single-stranded, circular DNA molecule.
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SO Term
SO:0000961 | RNA_chromosome
Description: Structural unit composed of a self-replicating, RNA molecule.
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SO Term
SO:0000962 | single_stranded_RNA_chromosome
Description: Structural unit composed of a self-replicating, single-stranded RNA molecule.
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SO Term
SO:0000963 | linear_single_stranded_RNA_chromosome
Description: Structural unit composed of a self-replicating, single-stranded, linear RNA molecule.
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SO Term
SO:0000964 | linear_double_stranded_RNA_chromosome
Description: Structural unit composed of a self-replicating, double-stranded, linear RNA molecule.
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SO Term
SO:0000965 | double_stranded_RNA_chromosome
Description: Structural unit composed of a self-replicating, double-stranded RNA molecule.
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SO Term
SO:0000966 | circular_single_stranded_RNA_chromosome
Description: Structural unit composed of a self-replicating, single-stranded, circular DNA molecule.
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SO Term
SO:0000967 | circular_double_stranded_RNA_chromosome
Description: Structural unit composed of a self-replicating, double-stranded, circular RNA molecule.
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SO Term
SO:0000973 | insertion_sequence
Description: A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats.
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SO Term
SO:0000975 | minicircle_gene
Description: A gene found within a minicircle.
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SO Term
SO:0000976 | cryptic
Description: A feature_attribute describing a feature that is not manifest under normal conditions.
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SO Term
SO:0000978 | template_region
Description: A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA.
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SO Term
SO:0000979 | gRNA_encoding
Description: A non-protein_coding gene that encodes a guide_RNA.
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SO Term
SO:0000981 | rho_dependent_bacterial_terminator
Description: A transcription terminator that is dependent upon Rho.
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SO Term
SO:0000982 | rho_independent_bacterial_terminator
Description: A transcription terminator that is not dependent upon Rho. Rather, the mRNA contains a sequence that allows it to base-pair with itself and make a stem-loop structure.
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SO Term
SO:0000989 | class_II_RNA
Description: Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm.
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SO Term
SO:0000990 | class_I_RNA
Description: Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm.
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SO Term
SO:0000992 | BAC_cloned_genomic_insert
Description: A region of DNA that has been inserted into the bacterial genome using a bacterial artificial chromosome.
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SO Term
SO:0000993 | consensus
Description: A sequence produced from an aligment algorithm that uses multiple sequences as input.
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SO Term
SO:0000994 | consensus_region
Description: A region that has a known consensus sequence.
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SO Term
SO:0000995 | consensus_mRNA
Description: An mRNA sequence produced from an aligment algorithm that uses multiple sequences as input.
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SO Term
SO:0000996 | predicted_gene
Description: A region of the genome that has been predicted to be a gene but has not been confirmed by laboratory experiments.
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SO Term
SO:0000997 | gene_fragment
Description: A portion of a gene that is not the complete gene.
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SO Term
SO:0000998 | recursive_splice_site
Description: A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons.
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SO Term
SO:0000999 | BAC_end
Description: A region of sequence from the end of a BAC clone that may provide a highly specific marker.
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SO Term
SO:0001000 | cytosolic_16S_rRNA
Description: Cytosolic 16S rRNA is an RNA component of the small subunit of cytosolic ribosomes in prokaryotes.
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SO Term
SO:0001001 | cytosolic_23S_rRNA
Description: Cytosolic 23S rRNA is an RNA component of the large subunit of cytosolic ribosomes in prokaryotes.
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SO Term
SO:0001002 | cytosolic_25S_rRNA
Description: Cytosolic 25S rRNA is an RNA component of the large subunit of cytosolic ribosomes most eukaryotes.
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SO Term
SO:0001003 | solo_LTR
Description: A recombination product between the 2 LTR of the same element.
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SO Term
SO:0001004 | low_complexity
Description: When a sequence does not contain an equal distribution of all four possible nucleotide bases or does not contain all nucleotide bases.
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SO Term
SO:0001005 | low_complexity_region
Description: A region where the DNA does not contain an equal distrubution of all four possible nucleotides or does not contain all four nucleotides.
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SO Term
SO:0001006 | prophage
Description: A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated "island".
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SO Term
SO:0001007 | cryptic_prophage
Description: A remnant of an integrated prophage in the host genome or an "island" in the host genome that includes phage like-genes.
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SO Term
SO:0001008 | tetraloop
Description: A base-paired stem with loop of 4 non-hydrogen bonded nucleotides.
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SO Term
SO:0001009 | DNA_constraint_sequence
Description: A double-stranded DNA used to control macromolecular structure and function.
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SO Term
SO:0001010 | i_motif
Description: A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH.
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SO Term
SO:0001184 | PNA
Description: An attribute describing a sequence composed of peptide nucleic acid (CHEBI:48021), a chemical consisting of nucleobases bound to a backbone composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds.
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SO Term
SO:0001011 | PNA_oligo
Description: Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds.
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SO Term
SO:0001012 | DNAzyme
Description: A DNA sequence with catalytic activity.
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