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Search results 2101 to 2200 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
Pfam:PF01636 | Phosphotransferase enzyme family
Description: This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation [2]. This family also includes homoserine kinase. This family is related to fructosamine kinase Pfam:PF03881.
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Ontology Term
Pfam:PF04450 | Peptidase of plants and bacteria
Description: These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [1].
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Ontology Term
PANTHER:PTHR10436 | RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN
 
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Ontology Term
Pfam:PF00849 | RNA pseudouridylate synthase
Description: Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD Swiss:P33643, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA [1].
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Ontology Term
PANTHER:PTHR19302 | GAMMA TUBULIN COMPLEX PROTEIN
 
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Ontology Term
Pfam:PF04130 | Gamma tubulin complex component C-terminal
Description: This is the C-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthermore, family members such as human GCP4 (Gamma-tubulin complex component 4) have been structurally elucidated Swiss:Q9UGJ1 . Structure-based sequence analysis revealed the existence of an exposed surface area conserved in all human GCPs and in GCP4 orthologs. This area is located in the C-terminal domain of GCP4, which was confirmed in vitro to bind directly to gamma-tubulin. Sequence alignment of human GCPs based on the GCP4 structure helped delineate conserved regions in the N- and C-terminal domains [2].
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Ontology Term
PANTHER:PTHR31118 | CYCLASE-LIKE PROTEIN 2
 
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Ontology Term
Pfam:PF04199 | Putative cyclase
Description: Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.
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Ontology Term
PANTHER:PTHR10024:SF126 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR10799:SF208 | DNA REPAIR AND RECOMBINATION PROTEIN RAD54-LIKE
 
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Ontology Term
PANTHER:PTHR11851:SF68 | PRESEQUENCE PROTEASE, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF08367 | Peptidase M16C associated
Description: This domain appears in eukaryotes as well as bacteria and tends to be found near the C-terminus of the metalloprotease M16C (Pfam:PF05193).
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Ontology Term
Pfam:PF00850 | Histone deacetylase domain
Description: Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1].
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Ontology Term
Pfam:PF14308 | X-domain of DnaJ-containing
Description: IN certain plant and yeast proteins, the DnaJ-1 proteins have a three-domain structure. The x-domain lies between the N-terminal DnaJ and the C-terminal Z domains. The exact function is not known.
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Ontology Term
PANTHER:PTHR24076 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR13808 | CBP/P300-RELATED
 
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Ontology Term
Pfam:PF00569 | Zinc finger, ZZ type
Description: Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure [2].
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Ontology Term
Pfam:PF08214 | Histone acetylation protein
Description: Histone acetylation is required in many cellular processes including transcription, DNA repair, and chromatin assembly. This family contains the fungal KAT11 protein (previously known as RTT109) which is required for H3K56 acetylation. Loss of KAT11 results in the loss of H3K56 acetylation, both on bulk histone and on chromatin [1]. KAT11 and H3K56 acetylation appear to correlate with actively transcribed genes and associate with the elongating form of Pol II in yeast [1]. This family also incorporates the p300/CBP histone acetyltransferase domain which has different catalytic properties and cofactor regulation to KAT11 [3].
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Ontology Term
PANTHER:PTHR24006 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
 
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Ontology Term
PANTHER:PTHR31288 | O-FUCOSYLTRANSFERASE FAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR10621 | UV EXCISION REPAIR PROTEIN RAD23
 
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Ontology Term
Pfam:PF09280 | XPC-binding domain
Description: Members of this family adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair [1].
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Ontology Term
PANTHER:PTHR24279 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR13890:SF0 | MAGNESIUM TRANSPORTER MRS2 HOMOLOG, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR24015:SF227 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR15840 | CGI-121 FAMILY MEMBER
 
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Ontology Term
Pfam:PF08617 | Kinase binding protein CGI-121
Description: CGI-121 has been shown to bind to the p53-related protein kinase (PRPK) [1]. PRPK is a novel protein kinase which binds to and induces phosphorylation of the tumour suppressor protein p53. CGI-121 is part of a conserved protein complex, KEOPS. The KEOPS complex is involved in telomere uncapping and telomere elongation [2]. Interestingly this family also include archaeal homologues, formerly in the DUF509 family. A structure for these proteins has been solved by structural genomics.
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Ontology Term
PANTHER:PTHR11843 | 40S RIBOSOMAL PROTEIN S12
 
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Ontology Term
Pfam:PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Description: This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
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Ontology Term
PANTHER:PTHR31194 | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR
 
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Ontology Term
PANTHER:PTHR12813 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR24007 | BRCA1-ASSOCIATED PROTEIN
 
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Ontology Term
Pfam:PF07576 | BRCA1-associated protein 2
Description: These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening [1]. These proteins share a region of sequence similarity at their N terminus. They also have Pfam:PF02148 at the C terminus.
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Ontology Term
PANTHER:PTHR23205 | SPLICING FACTOR 3A SUBUNIT 2
 
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Ontology Term
PANTHER:PTHR23205:SF0 | SPLICING FACTOR 3A SUBUNIT 2
 
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Ontology Term
PANTHER:PTHR12816 | RETINOBLASTOMA BINDING PROTEIN 5
 
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Ontology Term
PANTHER:PTHR23056 | CALCINEURIN B
 
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Ontology Term
PANTHER:PTHR10371 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR10371:SF3 | NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 2, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin
Description: NULL
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Ontology Term
PANTHER:PTHR22993 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE
 
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Ontology Term
Pfam:PF01149 | Formamidopyrimidine-DNA glycosylase N-terminal domain
Description: Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the N-terminal domain contains eight beta-strands, forming a beta-sandwich with two alpha-helices parallel to its edges [1].
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Ontology Term
Pfam:PF06831 | Formamidopyrimidine-DNA glycosylase H2TH domain
Description: Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the central domain containing the DNA-binding helix-two turn-helix domain [1].
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Ontology Term
Pfam:PF02892 | BED zinc finger
Description: NULL
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Ontology Term
Pfam:PF14372 | Domain of unknown function (DUF4413)
Description: This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases.
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Ontology Term
PANTHER:PTHR11564 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54
 
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Ontology Term
PANTHER:PTHR11564:SF5 | SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN
 
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Ontology Term
Pfam:PF00448 | SRP54-type protein, GTPase domain
Description: This family includes relatives of the G-domain of the SRP54 family of proteins.
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Ontology Term
Pfam:PF02881 | SRP54-type protein, helical bundle domain
Description: NULL
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Ontology Term
Pfam:PF02978 | Signal peptide binding domain
Description: NULL
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Ontology Term
PANTHER:PTHR31245 | UBIQUITIN SYSTEM COMPONENT CUE PROTEIN
 
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Ontology Term
PANTHER:PTHR11140 | PRE-MRNA SPLICING FACTOR PRP8
 
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Ontology Term
PANTHER:PTHR11140:SF0 | PRE-MRNA-PROCESSING-SPLICING FACTOR 8
 
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Ontology Term
Pfam:PF08082 | PRO8NT (NUC069), PrP8 N-terminal domain
Description: The PRO8NT domain is found at the N-terminus of pre-mRNA splicing factors of PRO8 family [1]. The NLS or nuclear localisation signal for these spliceosome proteins begins at the start and runs for 60 residues. N-terminal to this domain is a highly variable proline-rich region [4].
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Ontology Term
Pfam:PF08083 | PROCN (NUC071) domain
Description: The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [1].
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Ontology Term
Pfam:PF08084 | PROCT (NUC072) domain
Description: The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1].
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Ontology Term
Pfam:PF10596 | U6-snRNA interacting domain of PrP8
Description: This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [1].
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Ontology Term
Pfam:PF10597 | U5-snRNA binding site 2 of PrP8
Description: The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [1]. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [2].
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Ontology Term
Pfam:PF10598 | RNA recognition motif of the spliceosomal PrP8
Description: The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molecular rearrangements that occur there, and has recently come under the spotlight for its role in the inherited human disease, Retinitis Pigmentosa [1]. The RNA-recognition motif of PrP8 is highly conserved and provides a possible RNA binding centre for the 5-prime SS, BP, or 3-prime SS of pre-mRNA which are known to contact with Prp8. The most conserved regions of an RRM are defined as the RNP1 and RNP2 sequences. Recognition of RNA targets can also be modulated by a number of other factors, most notably the two loops beta1-alpha1, beta2-beta3 and the amino acid residues C-terminal to the RNP2 domain [2].
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Ontology Term
Pfam:PF12134 | PRP8 domain IV core
Description: This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core.
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Ontology Term
Pfam:PF01429 | Methyl-CpG binding domain
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [1]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [1]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [2].
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Ontology Term
PANTHER:PTHR32444 | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
PANTHER:PTHR26312 | TETRATRICOPEPTIDE REPEAT PROTEIN 5
 
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Ontology Term
PANTHER:PTHR26312:SF53 | F18B13.21 PROTEIN-RELATED
 
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Ontology Term
Pfam:PF13432 | Tetratricopeptide repeat
Description: This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
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Ontology Term
PANTHER:PTHR18896:SF11 | PHOSPHOLIPASE D
 
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Ontology Term
PANTHER:PTHR31194:SF0 | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF069-RELATED
 
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Ontology Term
PANTHER:PTHR11043 | ZETA-COAT PROTEIN
 
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Ontology Term
PANTHER:PTHR11043:SF1 | TSET COMPLEX MEMBER TSTD
 
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Ontology Term
Pfam:PF06232 | Embryo-specific protein 3, (ATS3)
Description: This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 (Arabidopsis thaliana seed gene 3) is expressed in a pattern similar to the Arabidopsis seed storage protein genes [1].
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Ontology Term
PANTHER:PTHR31736 | FAMILY NOT NAMED
 
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Ontology Term
Pfam:PF04134 | DCC1-like thiol-disulfide oxidoreductase
Description: Members of this family have two highly conserved cysteine residues within the DxxCxxC motif at the N-terminal. This motif is conserved in the thiol-disulfide oxidoreductase family [1]. This family includes At5g50100 (also known as DCC1) from Arabidopsis thaliana, a thioredoxin that modulates ROS homeostasis resulting in de novo shoot initiation and may be involved in the improvement of the capacity of plant regeneration [1]. Uncharacterised proteins from bacteria are also included in this family.
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Ontology Term
PANTHER:PTHR10806 | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11
 
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Ontology Term
Pfam:PF05553 | Cotton fibre expressed protein
Description: This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins [1]. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
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Ontology Term
PANTHER:PTHR10458 | PEPTIDE DEFORMYLASE
 
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Ontology Term
Pfam:PF01327 | Polypeptide deformylase
Description: NULL
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Ontology Term
PANTHER:PTHR11225 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
 
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Ontology Term
PANTHER:PTHR11225:SF4 | NUCLEAR PORE COMPLEX PROTEIN NUP93
 
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Ontology Term
Pfam:PF04097 | Nup93/Nic96
Description: Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex [1]. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 [3]. The structure of Nic96 has revealed a mostly alpha helical structure [4].
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Ontology Term
Pfam:PF01177 | Asp/Glu/Hydantoin racemase
Description: This family contains aspartate racemase, maleate isomerases EC:5.2.1.1 [1], glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76 [2].
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Ontology Term
PANTHER:PTHR18866 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
 
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Ontology Term
Pfam:PF00364 | Biotin-requiring enzyme
Description: This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins.
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Ontology Term
PANTHER:PTHR10410 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
 
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Ontology Term
PANTHER:PTHR10410:SF2 | LYS-63-SPECIFIC DEUBIQUITINASE BRCC36-RELATED
 
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Ontology Term
Pfam:PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Description: Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archael protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
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Ontology Term
PANTHER:PTHR10293 | GLUTAREDOXIN FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR10655 | LYSOPHOSPHOLIPASE-RELATED
 
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Ontology Term
Pfam:PF02230 | Phospholipase/Carboxylesterase
Description: This family consists of both phospholipases [1] and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases Pfam:PF00561 [2].
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Ontology Term
PANTHER:PTHR10122 | CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR10122:SF0 | CYTOCHROME C OXIDASE SUBUNIT 5B, ISOFORM A-RELATED
 
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Ontology Term
Pfam:PF01215 | Cytochrome c oxidase subunit Vb
Description: NULL
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Ontology Term
PANTHER:PTHR31265 | OS02G0527500 PROTEIN-RELATED
 
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Ontology Term
Pfam:PF04862 | Protein of unknown function (DUF642)
Description: This family represents a duplicated conserved region found in a number of uncharacterised plant proteins, potentially in the stem. There is a conserved CGP sequence motif.
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Ontology Term
PANTHER:PTHR11453 | ANION EXCHANGE PROTEIN
 
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Ontology Term
Pfam:PF00955 | HCO3- transporter family
Description: This family contains Band 3 anion exchange proteins that exchange CL-/HCO3- such as Swiss:P48751. This family also includes cotransporters of Na+/HCO3- such as Swiss:O15153.
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Ontology Term
PANTHER:PTHR10992:SF149 | ALPHA/BETA-HYDROLASE DOMAIN-CONTAINING PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR31187 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR31187:SF0 | ADP,ATP CARRIER PROTEIN 1, CHLOROPLASTIC-RELATED
 
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Ontology Term
Pfam:PF03219 | TLC ATP/ADP transporter
Description: NULL
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Ontology Term
Pfam:PF08370 | Plant PDR ABC transporter associated
Description: This domain is found on the C-terminus of ABC-2 type transporter domains (Pfam:PF01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [1, also Pfam:PF06422]. The PDR family is characterised by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain [1].
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