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Search results 1501 to 1600 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR13061:SF0 | GAMMA CARBONIC ANHYDRASE 1, MITOCHONDRIAL-RELATED
 
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Ontology Term
PANTHER:PTHR11669 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
 
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Ontology Term
Pfam:PF08542 | Replication factor C C-terminal domain
Description: This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A [1].
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Ontology Term
Pfam:PF05368 | NmrA-like family
Description: NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi [1]. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
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Ontology Term
PANTHER:PTHR12265 | UNCHARACTERIZED
 
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Ontology Term
PANTHER:PTHR12265:SF0 | EXPRESSED PROTEIN
 
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Ontology Term
Pfam:PF05705 | Eukaryotic protein of unknown function (DUF829)
Description: This family consists of several uncharacterised eukaryotic proteins.
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Ontology Term
PANTHER:PTHR19957 | SYNTAXIN
 
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Ontology Term
Pfam:PF00804 | Syntaxin
Description: Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (Pfam:PF05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A (Swiss:O35526) it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors [6].
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Ontology Term
Pfam:PF05739 | SNARE domain
Description: Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex [1].
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Ontology Term
PANTHER:PTHR22298 | ENDO-1,4-BETA-GLUCANASE
 
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Ontology Term
Pfam:PF00759 | Glycosyl hydrolase family 9
Description: NULL
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Ontology Term
PANTHER:PTHR16517 | TUBBY-RELATED
 
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Ontology Term
PANTHER:PTHR16517:SF7 | PROTEIN KING TUBBY
 
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Ontology Term
Pfam:PF01167 | Tub family
Description: NULL
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Ontology Term
PANTHER:PTHR22849 | WDSAM1 PROTEIN
 
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Ontology Term
Pfam:PF05804 | Kinesin-associated protein (KAP)
Description: This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II [1]. It includes kinesin-associated protein 3 (KAP3, also known as SMAP). In human and mouse, KAP3 is involved in tethering the chromosomes to the spindle pole and in chromosome movement. It binds to the tail domain of the KIF3A/KIF3B heterodimer to form a heterotrimeric KIF3 complex and may regulate the membrane binding of this complex [2,3].
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Ontology Term
PANTHER:PTHR23075 | PUTATIVE ATP-ASE
 
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Ontology Term
PANTHER:PTHR23075:SF0 | ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 3
 
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Ontology Term
Pfam:PF12037 | ATPase family AAA domain-containing protein 3, N-terminal
Description: This is the conserved N-terminal domain of ATPase family AAA domain-containing protein 3 (ATAD3) which is involved in dimerisation [1] and interacts with the inner surface of the outer mitochondrial membrane [2]. This domain is found associated with the AAA ATPase domain (Pfam:PF00004). ATAD3 is essential for mitochondrial network organisation, mitochondrial metabolism and cell growth at organism and cellular level. It may also play an important role in mitochondrial protein synthesis.
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Ontology Term
PANTHER:PTHR23241 | LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED
 
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Ontology Term
PANTHER:PTHR31948 | ZINC-FINGER HOMEODOMAIN PROTEIN 2
 
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Ontology Term
Pfam:PF04770 | ZF-HD protein dimerisation region
Description: This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure [1]. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger [1].
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Ontology Term
PANTHER:PTHR11711:SF26 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2
 
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Ontology Term
PANTHER:PTHR12894 | CNH DOMAIN CONTAINING
 
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Ontology Term
PANTHER:PTHR12894:SF5 | SUBFAMILY NOT NAMED
 
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Ontology Term
Pfam:PF00637 | Region in Clathrin and VPS
Description: Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
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Ontology Term
Pfam:PF00780 | CNH domain
Description: Domain found in NIK1-like kinase, mouse citron and yeast ROM1, ROM2. Unpublished observations.
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Ontology Term
Pfam:PF10366 | Vacuolar sorting protein 39 domain 1
Description: This domain is found on the vacuolar sorting protein Vps39 which is a component of the C-Vps complex [2]. Vps39 is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [3]. In Saccharomyces cerevisiae, Vps39 has been shown to stimulate nucleotide exchange [1]. The precise function of this domain has not been characterised.
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Ontology Term
Pfam:PF10367 | Vacuolar sorting protein 39 domain 2
Description: This domain is found on the vacuolar sorting protein Vps39 which is a component of the C-Vps complex [2]. Vps39 is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [3]. In Saccharomyces cerevisiae, Vps39 has been shown to stimulate nucleotide exchange [1]. This domain is involved in localisation and in mediating the interactions of Vps39 with Vps11 [1].
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Ontology Term
PANTHER:PTHR11632 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
 
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Ontology Term
Pfam:PF00890 | FAD binding domain
Description: This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
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Ontology Term
Pfam:PF02910 | Fumarate reductase flavoprotein C-term
Description: This family contains fumarate reductases, succinate dehydrogenases and L-aspartate oxidases.
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Ontology Term
Pfam:PF00176 | SNF2-related domain
Description: This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1)[1,2,3]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors.
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Ontology Term
PANTHER:PTHR14255 | CEREBLON
 
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Ontology Term
Pfam:PF01925 | Sulfite exporter TauE/SafE
Description: This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane [1] during taurine metabolism as an exporter of sulfoacetate [2]. This family used to be known as DUF81.
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Ontology Term
PANTHER:PTHR13952 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
 
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Ontology Term
Pfam:PF12220 | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
Description: This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with Pfam:PF00076. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
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Ontology Term
Pfam:PF06708 | Protein of unknown function (DUF1195)
Description: This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
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Ontology Term
PANTHER:PTHR31300 | LIPASE
 
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Ontology Term
Pfam:PF04788 | Protein of unknown function (DUF620)
Description: Family of uncharacterised proteins.
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Ontology Term
PANTHER:PTHR24063:SF148 | POLYOL TRANSPORTER 4-RELATED
 
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Ontology Term
PANTHER:PTHR12320 | PROTEIN PHOSPHATASE 2C
 
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Ontology Term
PANTHER:PTHR31189 | OS03G0336100 PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR31189:SF0 | CUPIN FAMILY PROTEIN
 
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Ontology Term
Pfam:PF00190 | Cupin
Description: This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
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Ontology Term
PANTHER:PTHR11946 | VALYL-TRNA SYNTHETASES
 
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Ontology Term
Pfam:PF00579 | tRNA synthetases class I (W and Y)
Description: NULL
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Ontology Term
PANTHER:PTHR24015:SF96 | OS01G0848300 PROTEIN
 
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Ontology Term
Pfam:PF03134 | TB2/DP1, HVA22 family
Description: This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein (e.g. Swiss:Q00765), which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Swiss:Q07764), which is thought to be a regulatory protein.
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Ontology Term
Pfam:PF03514 | GRAS domain family
Description: Proteins in the GRAS (GAI, RGA, SCR) family are known as major players in gibberellin (GA) signaling, which regulates various aspects of plant growth and development [1]. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction [2]. A sequence, structure and evolutionary analysis showed that the GRAS family emerged in bacteria and belongs to the Rossmann-fold, AdoMET (SAM)-dependent methyltransferase superfamily [3]. All bacterial, and a subset of plant GRAS proteins, are predicted to be active and function as small-molecule methylases. Several plant GRAS proteins lack one or more AdoMet (SAM)-binding residues while preserving their substrate-binding residues. Although GRAS proteins are implicated to function as transcriptional factors, the above analysis suggests that they instead might either modify or bind small molecules [3].
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Ontology Term
PANTHER:PTHR22952:SF6 | G-BOX-BINDING FACTOR 2-RELATED
 
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Ontology Term
PANTHER:PTHR30546 | FLAVODOXIN-RELATED PROTEIN WRBA-RELATED
 
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Ontology Term
PANTHER:PTHR30546:SF0 | FLAVOPROTEIN-LIKE PROTEIN YCP4-RELATED
 
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Ontology Term
Pfam:PF03358 | NADPH-dependent FMN reductase
Description: NULL
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Ontology Term
Pfam:PF01321 | Creatinase/Prolidase N-terminal domain
Description: This family includes the N-terminal non-catalytic domains from creatinase and prolidase. The exact function of this domain is uncertain.
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Ontology Term
PANTHER:PTHR31506 | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED
 
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Ontology Term
PANTHER:PTHR24067:SF39 | NEDD8-CONJUGATING ENZYME UBC12
 
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Ontology Term
PANTHER:PTHR12001 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE
 
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Ontology Term
Pfam:PF00348 | Polyprenyl synthetase
Description: NULL
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Ontology Term
PANTHER:PTHR31113 | UPF0496 PROTEIN 3-RELATED
 
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Ontology Term
Pfam:PF05055 | Protein of unknown function (DUF677)
Description: This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane [1].
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Ontology Term
PANTHER:PTHR13462 | CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL
 
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Ontology Term
PANTHER:PTHR13462:SF4 | SUBFAMILY NOT NAMED
 
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Ontology Term
Pfam:PF04678 | Mitochondrial calcium uniporter
Description: MCU functions with MICU1, an essential gatekeeper component of calcium-channel transport, to facilitate Ca2+ uptake into the mitochondrion [1,2,3].
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Ontology Term
PANTHER:PTHR12313 | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED
 
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Ontology Term
PANTHER:PTHR12313:SF0 | FI06431P-RELATED
 
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Ontology Term
PANTHER:PTHR16201 | SEVEN TRANSMEMBRANE PROTEIN 1-RELATED
 
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Ontology Term
Pfam:PF04193 | PQ loop repeat
Description: Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop [1]. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes [2]. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue [1]. Family members are membrane transporters since two members, cystinosin and PQLC2, transport cystine and cationic amino acids, respectively, across the lysosomal membrane [3]. The 2nd PQ-loop of cystinosin hosts the substrate-coupled H+ binding site underlying its H+ symport mechanism, suggesting that PQ-loop repeats have functional significance [4,5]. It is thus likely that PQ-loop-containing proteins act as a family of membrane transporters. Some transport cystine and cationic amino acids, respectively, across the lysosomal membrane. Others transport lysine and or arginine across the lysosomal membrane in order to maintain the acidic homoeostasis [6].
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Ontology Term
Pfam:PF01476 | LysM domain
Description: The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].
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Ontology Term
PANTHER:PTHR10292 | CLATHRIN HEAVY CHAIN RELATED
 
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Ontology Term
PANTHER:PTHR10292:SF1 | CLATHRIN HEAVY CHAIN
 
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Ontology Term
Pfam:PF01394 | Clathrin propeller repeat
Description: Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller [1].
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Ontology Term
Pfam:PF09268 | Clathrin, heavy-chain linker
Description: Members of this family adopt a structure consisting of alpha-alpha superhelix. They are predominantly found in clathrin, where they act as a heavy-chain linker domain [1].
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Ontology Term
Pfam:PF00412 | LIM domain
Description: This family represents two copies of the LIM structural domain.
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Ontology Term
Pfam:PF12315 | Protein DA1
Description: Proteins in this family include protein DA1 and its homologues. In Arabidopsis thaliana, DA1 is an ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. It may act maternally to control seed mass [1].
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Ontology Term
PANTHER:PTHR31060 | OSJNBA0011J08.25 PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR23054 | UNCHARACTERIZED
 
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Ontology Term
Pfam:PF04784 | Protein of unknown function, DUF547
Description: Family of uncharacterised proteins from C. elegans and A. thaliana.
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Ontology Term
Pfam:PF14389 | Leucine-zipper of ternary complex factor MIP1
Description: This leucine-zipper is towards the N-terminus of MIP1 proteins. These proteins, here largely from plants, are subunits of the TORC2 (rictor-mTOR) protein complex controlling cell growth and proliferation [2]. The leucine-zipper is likely to be the region that interacts with plant MADS-box factors [1],
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Ontology Term
PANTHER:PTHR10334 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED
 
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Ontology Term
Pfam:PF00188 | Cysteine-rich secretory protein family
Description: This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organisms, including prokaryotes [2] and non-vertebrate eukaryotes [3], The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences [4]. The Ca++-chelating function [3] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Swiss:Q91055 blocks the Ca++ transporting ryanodine receptors.
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Ontology Term
PANTHER:PTHR32021:SF1 | CASP-LIKE PROTEIN 5A1
 
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Ontology Term
Pfam:PF01716 | Manganese-stabilising protein / photosystem II polypeptide
Description: This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilising protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex [1].
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Ontology Term
PANTHER:PTHR15081 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED
 
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Ontology Term
PANTHER:PTHR15081:SF1 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN
 
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Ontology Term
Pfam:PF10516 | SHNi-TPR
Description: SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat [1].
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Ontology Term
PANTHER:PTHR31169 | OS05G0300700 PROTEIN
 
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Ontology Term
PANTHER:PTHR31169:SF1 | ZINC-FINGER DOMAIN OF MONOAMINE-OXIDASE A REPRESSOR R1 PROTEIN
 
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Ontology Term
Pfam:PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1
Description: R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [1].
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Ontology Term
PANTHER:PTHR10218 | GTP-BINDING PROTEIN ALPHA SUBUNIT
 
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Ontology Term
Pfam:PF00503 | G-protein alpha subunit
Description: G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
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Ontology Term
Pfam:PF00008 | EGF-like domain
Description: There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
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Ontology Term
PANTHER:PTHR10992:SF56 | ALPHA-HYDROXYNITRILE LYASE-RELATED
 
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Ontology Term
PANTHER:PTHR11709:SF26 | PECTINESTERASE LIKE PROTEIN-RELATED
 
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Ontology Term
PANTHER:PTHR10994:SF27 | RETICULON-LIKE PROTEIN B1-RELATED
 
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Ontology Term
Pfam:PF02453 | Reticulon
Description: Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues.
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Ontology Term
PANTHER:PTHR31003 | MYB FAMILY TRANSCRIPTION FACTOR
 
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Ontology Term
PANTHER:PTHR13391 | MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO
 
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Ontology Term
PANTHER:PTHR13391:SF0 | PROTEIN MISATO HOMOLOG 1
 
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