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Search results 2901 to 3000 out of 44733 for *

Category restricted to GOTerm (x)

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Category: GOTerm
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Type Details Score
GO Term
GO:0001017 | bacterial-type RNA polymerase regulatory region DNA binding
Description: Interacting selectively and non-covalently with a DNA region that controls the transcription of a gene or operon by a bacterial-type RNA polymerase. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
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GO Term
GO:0000985 | bacterial-type RNA polymerase core promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a DNA sequence that is part of the core promoter of a bacterial gene.
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GO Term
GO:0000986 | bacterial-type proximal promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a bacterial gene (or cistron, or operon). The proximal promoter is in cis with and relatively close to the core promoter.
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GO Term
GO:0000992 | polymerase III regulatory region sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
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GO Term
GO:0001016 | RNA polymerase III regulatory region DNA binding
Description: Interacting selectively and non-covalently with a DNA region that controls the transcription of a gene by RNA polymerase III. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
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GO Term
GO:0000994 | RNA polymerase III core binding
Description: Interacting selectively and non-covalently with RNA polymerase III core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits.
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GO Term
GO:0001050 | single-subunit type RNA polymerase binding
Description: Interacting selectively and non-covalently with a single subunit RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.
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GO Term
GO:0001001 | mitochondrial single-subunit type RNA polymerase binding
Description: Interacting selectively and non-covalently with a single subunit mitochondrial RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.
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GO Term
GO:0001030 | RNA polymerase III type 1 promoter DNA binding
Description: Interacting selectively and non-covalently with a region of DNA that is a part of a type 1 promoter that controls transcription by RNA polymerase III. Type 1 promoters are found in 5S rRNA genes, downstream of the transcription start site within the sequence of the mature RNA, and require TFIIIA for recognition.
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GO Term
GO:0001002 | RNA polymerase III type 1 promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 1 promoter that controls transcription by RNA polymerase III. Type 1 promoters are found in 5S rRNA genes, downstream of the transcription start site within the sequence of the mature RNA, and require TFIIIA for recognition.
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GO Term
GO:0080084 | 5S rDNA binding
Description: Interacting selectively and non-covalently with the 5S rDNA sequence encoding ribosomal 5S rRNA, which is individually transcribed by RNA polymerase III, rather than by RNA polymerase I, in species where it exists.
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GO Term
GO:0001003 | RNA polymerase III type 2 promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
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GO Term
GO:0001031 | RNA polymerase III type 2 promoter DNA binding
Description: Interacting selectively and non-covalently with a region of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
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GO Term
GO:0001134 | transcription regulator recruiting activity
Description: The function of binding to an RNA polymerase (RNAP) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation.
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GO Term
GO:0001004 | RNA polymerase III transcription regulator recruiting activity
Description: Initiating the assembly of the RNA polymerase III pre-initiation complex by binding to a control sequence in the intragenic region. This allows to recruit TFIIIB to the DNA at a site centered approximately 26 base pairs upstream of the start site of transcription. For tRNA genes, TFIIIC first associates with DNA, and then recruits TFIIIB. For 5S rRNA genes, TFIIIA binds to DNA first, followed by TFIIIC, which then recruits TFIIIB.
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GO Term
GO:0001032 | RNA polymerase III type 3 promoter DNA binding
Description: Interacting selectively and non-covalently with a region of DNA that is a part of a type 3 promoter that controls transcription by RNA polymerase III. A type 3 Pol III promoter is composed of elements upstream of the transcription start site, including a TATA box. The human U6 snRNA gene has a type 3 promoter. Type 3 Pol III promoters have not been observed in S. cerevisiae.
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GO Term
GO:0001006 | RNA polymerase III type 3 promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 3 promoter that controls transcription by RNA polymerase III (Pol III). A type 3 Pol III promoter is composed of elements upstream of the transcription start site, including a TATA box. The human U6 snRNA gene has a type 3 promoter. Type 3 Pol III promoters have not been observed in S. cerevisiae.
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GO Term
GO:0001010 | RNA polymerase II sequence-specific DNA-binding transcription factor recruiting activity
Description: The function of binding to a specific DNA sequence and recruiting another transcription factor to the DNA in order to modulate transcription. The recruited factor may bind DNA directly, or may be colocalized via protein-protein interactions.
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GO Term
GO:0001013 | RNA polymerase I regulatory region DNA binding
Description: Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by RNA polymerase I. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
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GO Term
GO:0009302 | snoRNA transcription
Description: The synthesis of small nucleolar RNA (snoRNA) from a DNA template.
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GO Term
GO:0001014 | snoRNA transcription by RNA polymerase III
Description: The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase III, originating at a type 2 RNA polymerase III promoter.
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GO Term
GO:0001015 | snoRNA transcription by RNA polymerase II
Description: The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
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GO Term
GO:0001018 | mitochondrial promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA.
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GO Term
GO:0001019 | plastid RNA polymerase regulatory region DNA binding
Description: Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by a plastid RNA polymerase. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
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GO Term
GO:0140296 | general transcription initiation factor binding
Description: Interacting selectively and non-covalently with a general transcription initiation factor, a protein that contributes to transcription start site selection and transcription initiation.
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GO Term
GO:0001025 | RNA polymerase III general transcription initiation factor binding
Description: Interacting selectively and non-covalently with an RNA polymerase III transcription factor, any protein required to initiate or regulate transcription by RNA polymerase III.
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GO Term
GO:0001037 | RNA polymerase III hybrid type promoter DNA binding
Description: Interacting selectively and non-covalently with a region of DNA that is a part of a hybrid promoter that controls transcription by RNA polymerase III (Pol III). A hybrid Pol III promoter contains both regulatory elements both upstream and downstream of the transcription initiation site. An example gene with such a promoter is the S. cerevisiae U6 gene.
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GO Term
GO:0001039 | RNA polymerase III hybrid type promoter sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is a part of a hybrid type promoter that controls transcription by RNA polymerase III (Pol III). A hybrid Pol III promoter contains both regulatory elements both upstream and downstream of the transcription initiation site. An example gene with such a promoter is the S. cerevisiae U6 gene.
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GO Term
GO:0001042 | RNA polymerase I core binding
Description: Interacting selectively and non-covalently with RNA polymerase I core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits.
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GO Term
GO:0001048 | RNA polymerase IV core binding
Description: Interacting selectively and non-covalently with RNA polymerase IV core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in siRNA production.
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GO Term
GO:0001049 | RNA polymerase V core binding
Description: Interacting selectively and non-covalently with RNA polymerase V core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in production of noncoding transcripts at target loci for silencing.
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GO Term
GO:0001051 | plastid single-subunit type RNA polymerase binding
Description: Interacting selectively and non-covalently with a single subunit plastid RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.
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GO Term
GO:0001052 | plastid PEP RNA polymerase core enzyme binding
Description: Interacting selectively and non-covalently with the bacterial-type plastid PEP RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one double prime subunit.
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GO Term
GO:0034062 | 5'-3' RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template, via extension of the 3'-end.
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GO Term
GO:0097747 | RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template.
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GO Term
GO:0001057 | RNA polymerase IV activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase IV specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001058 | RNA polymerase V activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase V specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001059 | transcription by RNA polymerase IV
Description: The synthesis of RNA from a DNA template by RNA polymerase IV, originating at a Pol IV-specific promoter.
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GO Term
GO:0001060 | transcription by RNA polymerase V
Description: The synthesis of RNA from a DNA template by RNA polymerase V, originating at a Pol V-specific promoter.
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GO Term
GO:0001061 | bacterial-type RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a bacterial-type specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001062 | plastid PEP-A RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-A RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001063 | plastid PEP-B RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-B RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001064 | single subunit type RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001065 | mitochondrial single subunit type RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type mitochondrial RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001066 | plastid single subunit type RNA polymerase activity
Description: Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single subunit type plastid RNA polymerase specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
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GO Term
GO:0001069 | regulatory region RNA binding
Description: Interacting selectively and non-covalently with a RNA region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.
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GO Term
GO:0001068 | transcription regulatory region RNA binding
Description: Interacting selectively and non-covalently with a RNA region within the transcript that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon.
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GO Term
GO:0001072 | transcription antitermination factor activity, RNA binding
Description: Binds to RNA, typically within the nascent RNA transcript, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind the nascent RNA include the lambda N protein and the HIV-1 tat protein.
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GO Term
GO:0001073 | transcription antitermination factor activity, DNA binding
Description: Binds to DNA, typically within region of the promoter and transcribed region, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind DNA include the lambda Q protein.
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GO Term
GO:0001079 | nitrogen catabolite regulation of transcription from RNA polymerase II promoter
Description: A transcription regulation process in which the presence of one nitrogen source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
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GO Term
GO:0090293 | nitrogen catabolite regulation of transcription
Description: A transcription regulation process in which the presence of one nitrogen source leads to the modulation of the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources.
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GO Term
GO:0001080 | nitrogen catabolite activation of transcription from RNA polymerase II promoter
Description: A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
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GO Term
GO:0090294 | nitrogen catabolite activation of transcription
Description: A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources.
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GO Term
GO:0001081 | nitrogen catabolite repression of transcription from RNA polymerase II promoter
Description: A transcription regulation process in which the presence of one nitrogen source leads to a decrease in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
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GO Term
GO:0090295 | nitrogen catabolite repression of transcription
Description: A transcription regulation process in which the presence of one nitrogen source leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources.
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GO Term
GO:0001085 | RNA polymerase II transcription factor binding
Description: Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II.
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GO Term
GO:0001092 | TFIIA-class transcription factor complex binding
Description: Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.
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GO Term
GO:0001093 | TFIIB-class transcription factor binding
Description: Interacting selectively and non-covalently with a general RNA polymerase II transcription factor of the TFIIB class, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
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GO Term
GO:0001094 | TFIID-class transcription factor complex binding
Description: Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIID complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
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GO Term
GO:0001095 | TFIIE-class transcription factor complex binding
Description: Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIE complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
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GO Term
GO:0001096 | TFIIF-class transcription factor complex binding
Description: Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIF complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
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GO Term
GO:0001097 | TFIIH-class transcription factor complex binding
Description: Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIH complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
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GO Term
GO:0010458 | exit from mitosis
Description: The cell cycle transition where a cell leaves M phase and enters a new G1 phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.
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GO Term
GO:0001101 | response to acid chemical
Description: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form.
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GO Term
GO:0033613 | activating transcription factor binding
Description: Interacting selectively and non-covalently with an activating transcription factor, any protein whose activity is required to initiate or upregulate transcription.
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GO Term
GO:0001102 | RNA polymerase II activating transcription factor binding
Description: Interacting selectively and non-covalently with an RNA polymerase II transcription activating factor, a protein involved in positive regulation of transcription.
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GO Term
GO:0070491 | repressing transcription factor binding
Description: Interacting selectively and non-covalently with a transcription repressor, any protein whose activity is required to prevent or downregulate transcription.
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GO Term
GO:0001103 | RNA polymerase II repressing transcription factor binding
Description: Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription.
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GO Term
GO:0001108 | bacterial-type RNA polymerase holo enzyme binding
Description: Interacting selectively and non-covalently with the basal transcription machinery which is composed of a bacterial-type RNA polymerase core enzyme and a sigma factor, the minimal set of factors required for formation of the preinitiation complex (PIC) by a bacterial-type RNA polymerase.
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GO Term
GO:0001109 | promoter clearance during DNA-templated transcription
Description: Any process involved in the transition from the initiation to the elongation phases of transcription by a DNA-dependent RNA polymerase, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors.
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GO Term
GO:0001110 | promoter clearance from RNA polymerase III promoter
Description: Any process involved in the transition from the initiation to the elongation phases of transcription by RNA polymerase III, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase.
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GO Term
GO:0001111 | promoter clearance from RNA polymerase II promoter
Description: Any process involved in the transition from the initiation to the elongation phases of transcription by RNA polymerase II, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors.
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GO Term
GO:0001112 | DNA-templated transcriptional open complex formation
Description: Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble.
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GO Term
GO:0001120 | protein-DNA complex remodeling
Description: The acquisition, loss, or modification of macromolecules within a protein-DNA complex, resulting in the alteration of an existing complex.
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GO Term
GO:0034367 | protein-containing complex remodeling
Description: The acquisition, loss, or modification of macromolecules within a complex, resulting in the alteration of an existing complex.
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GO Term
GO:0001113 | transcriptional open complex formation at RNA polymerase II promoter
Description: Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase II preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble.
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GO Term
GO:0001114 | protein-DNA-RNA complex
Description: A macromolecular complex containing protein, DNA, and RNA molecules.
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GO Term
GO:0001115 | protein-DNA-RNA complex subunit organization
Description: Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA-RNA complex.
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GO Term
GO:0001116 | protein-DNA-RNA complex assembly
Description: The aggregation, arrangement and bonding together of proteins, DNA, and RNA molecules to form a protein-DNA-RNA complex.
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GO Term
GO:0001117 | protein-DNA-RNA complex disassembly
Description: The disaggregation of a protein-DNA-RNA complex into its constituent components.
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GO Term
GO:0001118 | transcription ternary complex disassembly
Description: The disaggregation of a transcription ternary complex, composed of RNA polymerase, template DNA, and an RNA transcript, into its constituent components.
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GO Term
GO:0001119 | protein-DNA-RNA complex remodeling
Description: The acquisition, loss, or modification of macromolecules within a protein-DNA-RNA complex, resulting in the alteration of an existing complex.
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GO Term
GO:0001121 | bacterial transcription
Description: The synthesis of RNA from a DNA template by a bacterial-type RNA polymerase, originating at a bacterial-type promoter.
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GO Term
GO:0001122 | promoter clearance from bacterial-type RNA polymerase promoter
Description: Any process involved in the transition from the initiation to the elongation phase of transcription by a bacterial-type RNA polymerase, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance generally involves dissociation of the sigma initiation factor.
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GO Term
GO:0001123 | transcription initiation from bacterial-type RNA polymerase promoter
Description: Any process involved in the assembly of bacterial-type RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
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GO Term
GO:0001124 | transcription elongation from bacterial-type RNA polymerase promoter
Description: The extension of an RNA molecule after transcription initiation and promoter clearance at a bacterial-type RNA polymerase promoter by the addition of ribonucleotides catalyzed by a bacterial-type RNA polymerase.
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GO Term
GO:0001125 | transcription termination from bacterial-type RNA polymerase promoter
Description: The process in which the synthesis of an RNA molecule by a bacterial-type RNA polymerase using a DNA template is completed.
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GO Term
GO:0001126 | bacterial-type RNA polymerase preinitiation complex assembly
Description: The aggregation, arrangement and bonding together of proteins on a bacterial-type RNA polymerase promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription.
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GO Term
GO:0001127 | transcriptional open complex formation at bacterial-type RNA polymerase promoter
Description: Any process involved in the melting of the DNA hybrid of the core promoter region within a bacterial-type RNA polymerase promoter to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble.
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GO Term
GO:0001135 | RNA polymerase II transcription regulator recruiting activity
Description: The function of binding to an RNA polymerase II (RNAP II) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation.
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GO Term
GO:0001139 | RNA polymerase II complex recruiting activity
Description: Interacting selectively and non-covalently with an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way in order to facilitate the aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase.
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GO Term
GO:0001147 | transcription termination site sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that promotes termination by RNA polymerase. The transcribed region might be described as a gene, cistron, or operon.
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GO Term
GO:0001145 | mitochondrial RNA polymerase termination site sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a DNA sequence that controls mitochondrial transcription termination.
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GO Term
GO:0001160 | transcription termination site DNA binding
Description: Interacting selectively and non-covalently with a region of DNA that promotes termination by RNA polymerase. The transcribed region might be described as a gene, cistron, or operon.
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GO Term
GO:0001148 | bacterial-type RNA polymerase termination site sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is a terminator for bacterial-type RNA polymerase.
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GO Term
GO:0001150 | bacterial-type RNA polymerase enhancer sequence-specific DNA binding
Description: Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site, although they can be further away or may be downstream of the promoter. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.
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GO Term
GO:0001154 | TFIIIB-class transcription factor complex binding
Description: Interacting selectively and non-covalently with a general RNA polymerase III transcription factor belonging to the TFIIB complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III.
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GO Term
GO:0001155 | TFIIIA-class transcription factor binding
Description: Interacting selectively and non-covalently with an RNA polymerase III transcription factor of the TFIIIA class, one of the factors involved in formation of the preinitiation complex (PIC) at RNA polymerase III promoters.
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GO Term
GO:0001156 | TFIIIC-class transcription factor complex binding
Description: Interacting selectively and non-covalently with a general RNA polymerase III transcription factor belonging to the TFIIC complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III.
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GO Term
GO:0044213 | intronic transcription regulatory region DNA binding
Description: Interacting selectively and non-covalently with an intronic DNA region that regulates the transcription of the transcript it is contained within.
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USDA
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