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Search results 1701 to 1800 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR31096 | ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED
 
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Ontology Term
Pfam:PF01842 | ACT domain
Description: This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95 Swiss:P08328, which is inhibited by serine [1]. Aspartokinase EC:2.7.2.4 Swiss:P53553, which is regulated by lysine. Acetolactate synthase small regulatory subunit Swiss:P00894, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1 Swiss:P00439, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51 Swiss:P21203. formyltetrahydrofolate deformylase EC:3.5.1.10, Swiss:P37051, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5 Swiss:P11585
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Ontology Term
PANTHER:PTHR21477 | ZGC:172139
 
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Ontology Term
Pfam:PF06404 | Phytosulfokine precursor protein (PSK)
Description: This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [1].
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Ontology Term
PANTHER:PTHR11751:SF26 | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE
 
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Ontology Term
PANTHER:PTHR10641:SF30 | MYB TRANSCRIPTION FACTOR
 
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Ontology Term
PANTHER:PTHR31908 | PROTEIN CROWDED NUCLEI 4
 
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Ontology Term
PANTHER:PTHR11601 | CYSTEINE DESULFURYLASE FAMILY MEMBER
 
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Ontology Term
Pfam:PF00266 | Aminotransferase class-V
Description: This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.
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Ontology Term
Pfam:PF00056 | lactate/malate dehydrogenase, NAD binding domain
Description: L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
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Ontology Term
PANTHER:PTHR23042 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
 
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Ontology Term
PANTHER:PTHR11014 | PEPTIDASE M20 FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR11014:SF7 | ACETYLORNITHINE DEACETYLASE
 
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Ontology Term
PANTHER:PTHR26374 | ZINC FINGER PROTEIN ZAT5
 
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Ontology Term
PANTHER:PTHR31747 | PROTEIN LSD1
 
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Ontology Term
Pfam:PF06943 | LSD1 zinc finger
Description: This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death [1].
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Ontology Term
PANTHER:PTHR31086 | ALUMINUM-ACTIVATED MALATE TRANSPORTER 10
 
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Ontology Term
Pfam:PF11744 | Aluminium activated malate transporter
Description: NULL
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Ontology Term
PANTHER:PTHR30508 | FES CLUSTER ASSEMBLY PROTEIN SUF
 
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Ontology Term
PANTHER:PTHR30508:SF0 | FES CLUSTER ASSEMBLY PROTEIN SUFD
 
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Ontology Term
Pfam:PF01458 | SUF system FeS cluster assembly, SufBD
Description: Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] [1]. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA [2]. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. SufA is homologous to IscA [3], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. This entry represents SufB and SufD proteins, which are homologous, and form part of the SufBCD complex in the SUF system [4]. SufB accepts sulfur transferred from SufE [5], whereas SufD may play a role in iron acquisition [6].
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Ontology Term
PANTHER:PTHR11715 | GLYCINE CLEAVAGE SYSTEM H PROTEIN
 
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Ontology Term
Pfam:PF01597 | Glycine cleavage H-protein
Description: This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
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Ontology Term
PANTHER:PTHR24286:SF12 | CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED
 
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Ontology Term
PANTHER:PTHR11817 | PYRUVATE KINASE
 
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Ontology Term
Pfam:PF00224 | Pyruvate kinase, barrel domain
Description: This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
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Ontology Term
Pfam:PF02887 | Pyruvate kinase, alpha/beta domain
Description: As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
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Ontology Term
Pfam:PF03372 | Endonuclease/Exonuclease/phosphatase family
Description: This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling [1]. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g Swiss:P27695, DNase I proteins EC:3.1.21.1 e.g. Swiss:P24855, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56 Swiss:O43426, Sphingomyelinase EC:3.1.4.12 Swiss:P11889 and Nocturnin Swiss:O35710.
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Ontology Term
PANTHER:PTHR19282 | TETRASPANIN
 
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Ontology Term
PANTHER:PTHR31312 | TRANSCRIPTION ACTIVATOR GLK1
 
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Ontology Term
PANTHER:PTHR12050 | LEPTIN RECEPTOR-RELATED
 
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Ontology Term
Pfam:PF04133 | Vacuolar protein sorting 55
Description: Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [1].
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Ontology Term
Pfam:PF00408 | Phosphoglucomutase/phosphomannomutase, C-terminal domain
Description: NULL
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Ontology Term
PANTHER:PTHR18901 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2
 
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Ontology Term
PANTHER:PTHR31692 | EXPANSIN-B3
 
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Ontology Term
PANTHER:PTHR32246 | INGRESSION PROTEIN FIC1
 
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Ontology Term
PANTHER:PTHR11702 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
 
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Ontology Term
Pfam:PF01018 | GTP1/OBG
Description: The N-terminal domain of Swiss:P20964 has the OBG fold, which is formed by three glycine-rich regions inserted into a small 8-stranded beta-sandwich these regions form six left-handed collagen-like helices packed and H-bonded together.
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Ontology Term
Pfam:PF01926 | 50S ribosome-binding GTPase
Description: The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.
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Ontology Term
PANTHER:PTHR24073:SF8 | RAS-RELATED PROTEIN RAB-21
 
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Ontology Term
PANTHER:PTHR10887 | DNA2/NAM7 HELICASE FAMILY
 
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Ontology Term
Pfam:PF09416 | RNA helicase (UPF2 interacting domain)
Description: UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) [1].
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Ontology Term
Pfam:PF13086 | AAA domain
Description: This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.
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Ontology Term
Pfam:PF13087 | AAA domain
Description: This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.
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Ontology Term
PANTHER:PTHR22884:SF96 | HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH5-RELATED
 
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Ontology Term
Pfam:PF02182 | SAD/SRA domain
Description: The domain goes by several names including SAD [1], SRA [2] and YDG [3]. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria [4]. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix [5].The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base [4][5]. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks [2]. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination [4]. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions [4]. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains [6]. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA [4].
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Ontology Term
PANTHER:PTHR31513 | EPHRIN TYPE-B RECEPTOR
 
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Ontology Term
PANTHER:PTHR10046 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR10046:SF24 | LON PROTEASE HOMOLOG 2, PEROXISOMAL
 
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Ontology Term
Pfam:PF05362 | Lon protease (S16) C-terminal proteolytic domain
Description: The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
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Ontology Term
Pfam:PF02190 | ATP-dependent protease La (LON) substrate-binding domain
Description: This domain has been shown to be part of the PUA superfamily [2]. This domain represents a general protein and polypeptide interaction domain for the ATP-dependent serine peptidase, LON, Peptidase_S16, Pfam:PF05362. ATP-dependent Lon proteases are conserved in all living organisms and catalyse rapid turnover of short-lived regulatory proteins and many damaged or denatured proteins.
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Ontology Term
PANTHER:PTHR16166 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
 
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Ontology Term
Pfam:PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13
Description: SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44 [1].
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Ontology Term
Pfam:PF06101 | Vacuolar protein sorting-associated protein 62
Description: Vps62 is a vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins [1].
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Ontology Term
Pfam:PF00169 | PH domain
Description: PH stands for pleckstrin homology.
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Ontology Term
Pfam:PF12624 | N-terminal region of Chorein or VPS13
Description: Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport.
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Ontology Term
Pfam:PF04570 | zinc-finger of the FCS-type, C2-C2
Description: zf-FLZ is a FCS-like zinc-finger domain found in higher plants. It is bryophitic in origin. It carries a zf-FCS-like C2-C2 zinc finger, consisting of a consensus cysteine-signature sequence with conserved phenyl alanine and serine residue associated with a third cysteine. It acts as a protein-protein interaction module [1].
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Ontology Term
PANTHER:PTHR14493 | UNKEMPT FAMILY MEMBER
 
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Ontology Term
PANTHER:PTHR31352 | BETA-AMYLASE 1, CHLOROPLASTIC
 
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Ontology Term
Pfam:PF01373 | Glycosyl hydrolase family 14
Description: This family are beta amylases.
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Ontology Term
PANTHER:PTHR11517 | 60S RIBOSOMAL PROTEIN L37A
 
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Ontology Term
Pfam:PF01780 | Ribosomal L37ae protein family
Description: This ribosomal protein is found in archaebacteria and eukaryotes. It contains four conserved cysteine residues that may bind to zinc.
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Ontology Term
PANTHER:PTHR11740 | CASEIN KINASE II SUBUNIT BETA
 
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Ontology Term
Pfam:PF01214 | Casein kinase II regulatory subunit
Description: NULL
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Ontology Term
PANTHER:PTHR12395 | DOM-3 RELATED
 
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Ontology Term
PANTHER:PTHR12395:SF9 | DECAPPING AND EXORIBONUCLEASE PROTEIN
 
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Ontology Term
Pfam:PF08652 | RAI1 like PD-(D/E)XK nuclease
Description: RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease [1]. It is required for 5.8S rRNA processing [1]. Profile-profile comparison tools demonstrate this to be a PD-(D/E)XK nuclease, with a full set of canonical active site signature motifs characteristic to the PD-(D/E)XK nuclease superfamily [2].
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Ontology Term
PANTHER:PTHR24343 | SERINE/THREONINE KINASE
 
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Ontology Term
PANTHER:PTHR24343:SF55 | SERINE/THREONINE-PROTEIN KINASE SRK2C
 
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Ontology Term
Pfam:PF06200 | tify domain
Description: This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.
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Ontology Term
PANTHER:PTHR10150 | DNA REPAIR ENDONUCLEASE XPF
 
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Ontology Term
Pfam:PF02732 | ERCC4 domain
Description: This domain is a family of nucleases. The family includes EME1 which is an essential component of a Holliday junction resolvase [2-3]. EME1 interacts with MUS81 to form a DNA structure-specific endonuclease.
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Ontology Term
Pfam:PF13906 | C-terminus of AA_permease
Description: This is the C-terminus of AA-permease enzymes that is not captured by the models Pfam:PF00324 and Pfam:PF13520.
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Ontology Term
PANTHER:PTHR11606 | GLUTAMATE DEHYDROGENASE
 
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Ontology Term
Pfam:PF00208 | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Description: NULL
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Ontology Term
Pfam:PF02812 | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
Description: NULL
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Ontology Term
Pfam:PF13919 | Asx homology domain
Description: A conserved alpha helical domain with a characteristic LXXLL motif [1] [2]. The LXXLL motif is detected in diverse transcription factors, coactivators and corepressors and is implicated in mediating interactions between them [3]. The ASXH domain is found in animals, fungi and plants [4] and is predicted to play a role in mediating contact between transcription factors and chromatin-associated complexes. In Drosophila Asx and Human ASXL1, the ASXH domain is predicted to mediate interactions with the Calypso and BAP1 deubiquitinases (DUBs) which further belong to the UCHL5/UCH37 clade of DUBs [4].
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Ontology Term
PANTHER:PTHR23291:SF4 | BAX INHIBITOR 1
 
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Ontology Term
PANTHER:PTHR15680 | RIBOSOMAL PROTEIN L19
 
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Ontology Term
Pfam:PF01245 | Ribosomal protein L19
Description: NULL
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Ontology Term
Pfam:PF01494 | FAD binding domain
Description: This domain is involved in FAD binding in a number of enzymes.
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Ontology Term
PANTHER:PTHR31403 | PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC
 
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Ontology Term
PANTHER:PTHR22597 | POLYCOMB GROUP PROTEIN
 
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Ontology Term
PANTHER:PTHR22597:SF0 | POLYCOMB PROTEIN SUZ12
 
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Ontology Term
Pfam:PF09733 | VEFS-Box of polycomb protein
Description: The VEFS-Box (VRN2-EMF2-FIS2-Su(z)12) box is the C-terminal region of these proteins, characterised by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain [1]. Some of these sequences are associated with a zinc-finger domain about 100 residues towards the N-terminus. This protein is one of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression [2].
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Ontology Term
PANTHER:PTHR10589 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
 
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Ontology Term
Pfam:PF01088 | Ubiquitin carboxyl-terminal hydrolase, family 1
Description: NULL
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Ontology Term
PANTHER:PTHR13994 | NUDIX HYDROLASE RELATED
 
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Ontology Term
PANTHER:PTHR11247:SF8 | PALMITOYL-PROTEIN THIOESTERASE 1
 
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Ontology Term
PANTHER:PTHR24326:SF105 | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14
 
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Ontology Term
Pfam:PF02183 | Homeobox associated leucine zipper
Description: NULL
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Ontology Term
Pfam:PF04618 | HD-ZIP protein N terminus
Description: This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.
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Ontology Term
PANTHER:PTHR10044 | INHIBITOR OF APOPTOSIS
 
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Ontology Term
Pfam:PF13934 | Nuclear pore complex assembly
Description: ELYS (embryonic large molecule derived from yolk sac) is conserved from fungi such Aspergillus nidulans and Schizosaccharomyces pombe to human [1]. It is important for the assembly of the nuclear pore complex [2].
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Ontology Term
Pfam:PF14749 | Acyl-coenzyme A oxidase N-terminal
Description: Acyl-coenzyme A oxidase consists of three domains. An N-terminal alpha-helical domain, a beta sheet domain (Pfam:PF02770) and a C-terminal catalytic domain (Pfam:PF01756). This entry represents the N-terminal alpha-helical domain [1].
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Ontology Term
PANTHER:PTHR10909:SF11 | PEROXISOMAL ACYL-COENZYME A OXIDASE 3
 
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Ontology Term
Pfam:PF01756 | Acyl-CoA oxidase
Description: This is a family of Acyl-CoA oxidases EC:1.3.3.6. Acyl-coA oxidase converts acyl-CoA into trans-2- enoyl-CoA [1].
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Ontology Term
PANTHER:PTHR11847 | RIBOSOMAL PROTEIN L15
 
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Ontology Term
Pfam:PF00827 | Ribosomal L15
Description: NULL
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Ontology Term
PANTHER:PTHR11361:SF21 | MUTS PROTEIN HOMOLOG 4
 
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