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Search results 2801 to 2900 out of 202262 for *

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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR12753 | AD-003 - RELATED
 
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Ontology Term
Pfam:PF05891 | AdoMet dependent proline di-methyltransferase
Description: This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyses the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified [1]. As with other methyltransferases, this family carries the characteristic GxGxG motif.
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Ontology Term
PANTHER:PTHR14303 | DNA POLYMERASE DELTA SUBUNIT 4
 
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Ontology Term
PANTHER:PTHR14303:SF0 | DNA POLYMERASE DELTA SUBUNIT 4
 
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Ontology Term
Pfam:PF04081 | DNA polymerase delta, subunit 4
Description: NULL
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Ontology Term
PANTHER:PTHR12863 | FATTY ACID HYDROXYLASE
 
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Ontology Term
PANTHER:PTHR12863:SF0 | FATTY ACID 2-HYDROXYLASE
 
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Ontology Term
Pfam:PF04116 | Fatty acid hydroxylase
Description: This entry includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways [1]. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase [2,3,6]. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax [4]. These enzymes contain two copies of a HXHH motif which coordinate two irons at the catalytic centre. Members of this family are ER integral membrane proteins that share a novel mushroom-shaped fold consisting of four transmembrane (TM1-TM4) helices that anchor them to the membrane capped by a cytosolic domain containing the unique histidine- coordinating di metal centre [5].
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Ontology Term
PANTHER:PTHR31238 | GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3
 
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Ontology Term
PANTHER:PTHR12993 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
 
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Ontology Term
Pfam:PF02585 | GlcNAc-PI de-N-acetylase
Description: Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyses the second step in GPI biosynthesis [1,2].
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Ontology Term
PANTHER:PTHR21404 | HEN1
 
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Ontology Term
Pfam:PF13489 | Methyltransferase domain
Description: This family appears to be a methyltransferase domain.
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Ontology Term
Pfam:PF07712 | Stress up-regulated Nod 19
Description: NULL
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Ontology Term
PANTHER:PTHR12387 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8
 
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Ontology Term
PANTHER:PTHR12387:SF0 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8
 
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Ontology Term
Pfam:PF03399 | SAC3/GANP family
Description: This family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 Swiss:P46674, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle.
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Ontology Term
PANTHER:PTHR10840 | PROGRAMMED CELL DEATH PROTEIN 5
 
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Ontology Term
Pfam:PF01984 | Double-stranded DNA-binding domain
Description: This domain is believed to bind double-stranded DNA [1] of 20 bases length.
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Ontology Term
PANTHER:PTHR11003 | POTASSIUM CHANNEL, SUBFAMILY K
 
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Ontology Term
Pfam:PF07885 | Ion channel
Description: This family includes the two membrane helix type ion channels found in bacteria.
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Ontology Term
PANTHER:PTHR13533 | N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE
 
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Ontology Term
Pfam:PF07779 | 10 TM Acyl Transferase domain found in Cas1p
Description: Cas1p protein of Cryptococcus neoformans is required for the synthesis of O-acetylated glucuronoxylomannans, a consitutent of the capsule, and is critical for its virulence [1]. The multi TM domain of the Cas1p was unified with the 10 TM Sugar Acyltransferase superfamily [2]. This superfamily is comprised of members from the OatA, MdoC, OpgC, NolL and GumG families in addition to the Cas1p family [2]. The Cas1p protein has a N terminal PC-Esterase domain with the opposing Acyl esterase activity [2].
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Ontology Term
Pfam:PF08323 | Starch synthase catalytic domain
Description: NULL
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Ontology Term
PANTHER:PTHR20971 | U6 SNRNA-ASSOCIATED PROTEIN
 
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Ontology Term
Pfam:PF01423 | LSM domain
Description: The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
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Ontology Term
Pfam:PF04481 | Protein of unknown function (DUF561)
Description: Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
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Ontology Term
PANTHER:PTHR11712 | POLYKETIDE SYNTHASE-RELATED
 
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Ontology Term
Pfam:PF00109 | Beta-ketoacyl synthase, N-terminal domain
Description: The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine [1].
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Ontology Term
PANTHER:PTHR11630:SF46 | DNA REPLICATION LICENSING FACTOR MCM3
 
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Ontology Term
Pfam:PF13460 | NAD(P)H-binding
Description: NULL
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Ontology Term
PANTHER:PTHR15020 | FLAVIN REDUCTASE-RELATED
 
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Ontology Term
PANTHER:PTHR12709 | DNA-DIRECTED RNA POLYMERASE II, III
 
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Ontology Term
Pfam:PF03876 | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Description: Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at least one of the subunits contacted by the transcription factor TIF-IA [2]. The N terminus of Rpb7p/Rpc25p/MJ0397 has a SHS2 domain that is involved in protein-protein interaction [3].
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Ontology Term
PANTHER:PTHR12956 | ALKALINE CERAMIDASE-RELATED
 
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Ontology Term
PANTHER:PTHR12956:SF13 | OS01G0210400 PROTEIN
 
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Ontology Term
Pfam:PF04765 | Protein of unknown function (DUF616)
Description: Family of uncharacterised proteins.
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Ontology Term
Pfam:PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex
Description: The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six [1].
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Ontology Term
Pfam:PF00185 | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Description: NULL
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Ontology Term
Pfam:PF02729 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
Description: NULL
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Ontology Term
PANTHER:PTHR10799:SF131 | CHROMATIN REMODELING 4 PROTEIN
 
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Ontology Term
PANTHER:PTHR24015:SF50 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR11952 | UDP- GLUCOSE PYROPHOSPHORYLASE
 
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Ontology Term
PANTHER:PTHR11952:SF2 | LD24639P
 
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Ontology Term
Pfam:PF01704 | UTP--glucose-1-phosphate uridylyltransferase
Description: This family consists of UTP--glucose-1-phosphate uridylyltransferases, EC:2.7.7.9. Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi [1]. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type [1]. In Dictyostelium (slime mold) mutants in this enzyme abort the development cycle [2]. Also within the family is UDP-N-acetylglucosamine Swiss:Q16222 or AGX1 [3] and two hypothetical proteins from Borrelia burgdorferi the lyme disease spirochaete Swiss:O51893 and Swiss:O51036.
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Ontology Term
PANTHER:PTHR20854 | INOSITOL MONOPHOSPHATASE
 
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Ontology Term
Pfam:PF00459 | Inositol monophosphatase family
Description: NULL
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Ontology Term
PANTHER:PTHR10902 | 60S RIBOSOMAL PROTEIN L35A
 
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Ontology Term
Pfam:PF01247 | Ribosomal protein L35Ae
Description: NULL
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Ontology Term
PANTHER:PTHR21058 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE
 
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Ontology Term
Pfam:PF00885 | 6,7-dimethyl-8-ribityllumazine synthase
Description: This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example Swiss:O28856. The family contains a number of different subsets including a family of proteins comprising archaeal lumazine and riboflavin synthases, type I lumazine synthases, and the eubacterial type II lumazine synthases [1]. It has been established that lumazine synthase catalyses the penultimate step in the biosynthesis of riboflavin in plants and microorganisms. The type I lumazine synthases area active in pentameric or icosahedral quaternary assemblies, whereas the type II are decameric [2]. Brucella, a bacterial genus that causes brucellosis, and other Rhizobiales have an atypical riboflavin metabolic pathway. Brucella spp code for both a type-I and a type-II lumazine synthase, and it has been shown that at least one of these two has to be present in order for Brucella to be viable, showing that in the case of Brucella flavin metabolism is implicated in bacterial virulence [3].
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Ontology Term
PANTHER:PTHR11254 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
 
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Ontology Term
Pfam:PF00632 | HECT-domain (ubiquitin-transferase)
Description: The name HECT comes from Homologous to the E6-AP Carboxyl Terminus.
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Ontology Term
Pfam:PF06012 | Domain of Unknown Function (DUF908)
Description: NULL
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Ontology Term
Pfam:PF06025 | Domain of Unknown Function (DUF913)
Description: Members of this family are found in various ubiquitin protein ligases.
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Ontology Term
Pfam:PF14377 | Ubiquitin binding region
Description: This family contains repetitive element (RE) from a subgroup of HECT E3 ubiquitin ligases and the Y-family translesion polymerases, including human HUWE1 and Arabidopsis UPL1. Each of these repetitive elements are approximately 20 amino acids in length and contain two predicted helical segments separated by a Leu-Pro motif. The REs from the Y-family polymerases were shown to bind ubiquitin and were the basis for a novel ubiquitin-binding domain called the ubiquitin-binding motif (UBM) [1].
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Ontology Term
Pfam:PF05971 | RNA methyltransferase
Description: This family includes ribosomal RNA large subunit methyltransferase F, and related proteins, including methyltransferase-like protein 16 (METTL16). METTL16 is a conserved RNA methyltransferase which interacts specifically with the MALAT1 triple helix. METTL16 shows nuclear localisation [1]. Another functional study indicates that METTL16 regulates expression of human MAT2A, which encodes the SAM synthetase expressed in most cells. Furthermore, results indicate that METTL16 is the long-unknown methyltransferase for the U6 spliceosomal small nuclear RNA (snRNA) and it has evolved an additional function in vertebrates to control SAM homeostasis by post-transcriptionally regulating SAM synthetase gene expression [2].
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Ontology Term
PANTHER:PTHR10681 | THIOREDOXIN PEROXIDASE
 
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Ontology Term
PANTHER:PTHR10681:SF17 | PEROXIREDOXIN-6
 
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Ontology Term
Pfam:PF00578 | AhpC/TSA family
Description: This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA).
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Ontology Term
Pfam:PF10417 | C-terminal domain of 1-Cys peroxiredoxin
Description: This is the C-terminal domain of 1-Cys peroxiredoxin (1-cysPrx), a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols [1]. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine, upstream of this domain; and glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulfide to the sulfhydryl and consequent activation of the enzyme [2]. The domain is associated with family AhpC-TSA, Pfam:PF00578, which carries the catalytic cysteine.
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Ontology Term
PANTHER:PTHR32133 | OS07G0120400 PROTEIN
 
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Ontology Term
PANTHER:PTHR12772 | DNA REPLICATION COMPLEX GINS PROTEIN PSF2
 
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Ontology Term
Pfam:PF05916 | GINS complex protein
Description: The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase [4].
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Ontology Term
Pfam:PF00580 | UvrD/REP helicase N-terminal domain
Description: The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Swiss:P23478, Swiss:P08394 have large insertions near to the carboxy-terminus relative to other members of the family.
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Ontology Term
Pfam:PF13361 | UvrD-like helicase C-terminal domain
Description: This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.
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Ontology Term
PANTHER:PTHR26312:SF52 | PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3
 
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Ontology Term
Pfam:PF13371 | Tetratricopeptide repeat
Description: NULL
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Ontology Term
PANTHER:PTHR13861 | VACUOLAR ATP SYNTHASE SUBUNIT F
 
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Ontology Term
Pfam:PF01990 | ATP synthase (F/14-kDa) subunit
Description: This family includes 14-kDa subunit from vATPases [1], which is in the peripheral catalytic part of the complex [2]. The family also includes archaebacterial ATP synthase subunit F [3].
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Ontology Term
Pfam:PF13248 | zinc-ribbon domain
Description: This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. Pfam:PF12773.
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Ontology Term
PANTHER:PTHR23102 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED
 
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Ontology Term
PANTHER:PTHR13275 | YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1
 
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Ontology Term
Pfam:PF05764 | YL1 nuclear protein
Description: The proteins in this family are designated YL1 [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1].
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Ontology Term
Pfam:PF08265 | YL1 nuclear protein C-terminal domain
Description: This domain is found in proteins of the YL1 family [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1]. This domain is found in proteins that are not YL1 proteins.
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Ontology Term
PANTHER:PTHR11999 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
 
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Ontology Term
PANTHER:PTHR11999:SF1 | GLUTAMATE DECARBOXYLASE
 
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Ontology Term
Pfam:PF00282 | Pyridoxal-dependent decarboxylase conserved domain
Description: NULL
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Ontology Term
PANTHER:PTHR11742 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED
 
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Ontology Term
PANTHER:PTHR11742:SF7 | ENDOPLASMIC RETICULUM MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE
 
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Ontology Term
Pfam:PF01532 | Glycosyl hydrolase family 47
Description: Members of this family are alpha-mannosidases that catalyse the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
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Ontology Term
PANTHER:PTHR10766 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
 
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Ontology Term
PANTHER:PTHR10766:SF14 | TRANSMEMBRANE 9 SUPERFAMILY MEMBER 1
 
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Ontology Term
Pfam:PF02990 | Endomembrane protein 70
Description: NULL
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Ontology Term
Pfam:PF06217 | GAGA binding protein-like family
Description: This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA [1]. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
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Ontology Term
PANTHER:PTHR16950 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4
 
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Ontology Term
PANTHER:PTHR11200:SF63 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
 
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Ontology Term
PANTHER:PTHR10161 | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5
 
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Ontology Term
PANTHER:PTHR14049 | LEPRECAN 1
 
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Ontology Term
Pfam:PF13661 | 2OG-Fe(II) oxygenase superfamily
Description: This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [1].
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Ontology Term
PANTHER:PTHR10106 | CYTOCHROME B561-RELATED
 
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Ontology Term
PANTHER:PTHR10106:SF0 | LD36721P
 
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Ontology Term
PANTHER:PTHR21736 | VERNALIZATION-INSENSITIVE PROTEIN 3
 
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Ontology Term
PANTHER:PTHR21736:SF15 | PROTEIN OBERON 3-RELATED
 
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Ontology Term
PANTHER:PTHR13794 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE
 
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Ontology Term
PANTHER:PTHR13794:SF13 | SUBFAMILY NOT NAMED
 
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Ontology Term
Pfam:PF02746 | Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
Description: SCOP reports fold similarity with enolase N-terminal domain.
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Ontology Term
Pfam:PF10716 | NADH dehydrogenase transmembrane subunit
Description: The NdhL family is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits [1].
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Ontology Term
PANTHER:PTHR13448 | TRANSMEMBRANE PROTEIN 214
 
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Ontology Term
Pfam:PF10151 | TMEM214, C-terminal, caspase 4 activator
Description: This is the N-terminal domain of transmembrane family 214, from eukaryotes. The family is localised on the endoplasmic reticulum where it recruits procaspase 4 to the ER and subsequently allows this to be cleaved to caspase 4 so leading to apoptosis [1].
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