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Category: OntologyTerm
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Type Details Score
Ontology Term
PANTHER:PTHR11695:SF294 | RETICULON-4-INTERACTING PROTEIN 1, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF13602 | Zinc-binding dehydrogenase
Description: NULL
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Ontology Term
PANTHER:PTHR31458 | POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2
 
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Ontology Term
Pfam:PF03181 | BURP domain
Description: The BURP domain is found at the C-terminus of several different plant proteins. It was named after the proteins in which it was first identified: the BNM2 clone-derived protein from Brassica napus Swiss:O65009; USPs and USP-like proteins Swiss:P21746 Swiss:P21747 Swiss:Q06765 Swiss:O24482; RD22 from Arabidopsis thaliana Swiss:Q08298; and PG1beta from Lycopersicon esculentum Swiss:Q40161. This domain is around 230 amino acid residues long. It possesses the following conserved features: two phenylalanine residues at its N-terminus; two cysteine residues; and four repeated cysteine-histidine motifs, arranged as: CH-X(10)-CH-X(25-27)-CH-X(25-26)-CH, where X can be any amino acid [1]. The function of this domain is unknown.
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Ontology Term
Pfam:PF06955 | Xyloglucan endo-transglycosylase (XET) C-terminus
Description: This family represents the C-terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall [1]. Note that all family members contain the Pfam:PF00722 domain.
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Ontology Term
PANTHER:PTHR11558 | SPERMIDINE/SPERMINE SYNTHASE
 
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Ontology Term
Pfam:PF01564 | Spermine/spermidine synthase domain
Description: Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
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Ontology Term
PANTHER:PTHR10548 | SPLICING FACTOR, ARGININE/SERINE-RICH
 
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Ontology Term
PANTHER:PTHR13833 | FAMILY NOT NAMED
 
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Ontology Term
Pfam:PF01436 | NHL repeat
Description: The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat Pfam:PF00400. The repeats have a catalytic activity in Swiss:P10731, proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats [2]. Swiss:Q13049 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats [3].
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Ontology Term
PANTHER:PTHR24015:SF77 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR11603 | AAA FAMILY ATPASE
 
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Ontology Term
PANTHER:PTHR11603:SF49 | GLUCONOKINASE-RELATED
 
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Ontology Term
Pfam:PF01202 | Shikimate kinase
Description: NULL
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Ontology Term
Pfam:PF00128 | Alpha amylase, catalytic domain
Description: Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
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Ontology Term
PANTHER:PTHR24078 | DNAJ HOMOLOG SUBFAMILY C MEMBER
 
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Ontology Term
Pfam:PF14244 | gag-polypeptide of LTR copia-type
Description: This family is found in Plants and fungi, and contains pol polyprotein-like retroelements or retrotransposons of the copia-type. It is a short domain at the very start of these polypeptides.
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Ontology Term
PANTHER:PTHR24015:SF169 | SUBFAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR13542 | LSM12 HOMOLOG
 
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Ontology Term
Pfam:PF09793 | Anticodon-binding domain
Description: This domain of approximately 100 residues is conserved from plants to humans. It is frequently found in association with Lsm domain-containing proteins. It is an anticodon-binding domain of a prolyl-tRNA synthetase, whose PDB structure is available under the identifier 1h4q.
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Ontology Term
PANTHER:PTHR12534 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR
 
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Ontology Term
PANTHER:PTHR12534:SF0 | 28S RIBOSOMAL PROTEIN S2, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF00318 | Ribosomal protein S2
Description: NULL
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Ontology Term
Pfam:PF04998 | RNA polymerase Rpb1, domain 5
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound [1,2].
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Ontology Term
Pfam:PF00696 | Amino acid kinase family
Description: This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Swiss:P00561. Acetylglutamate kinase EC:2.7.2.8, Swiss:Q07905. Glutamate 5-kinase EC:2.7.2.11, Swiss:P07005. Uridylate kinase EC:2.7.4.-, Swiss:P29464. Carbamate kinase EC:2.7.2.2, Swiss:O96432.
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Ontology Term
Pfam:PF12554 | Mitotic-spindle organizing gamma-tubulin ring associated
Description: The name MOZART is derived from letters of 'mitotic-spindle organizing proteins associated with a ring of gamma-tubulin'. This family operates as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, this family does not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBCGP nomenclature cannot be used for it. MOZART1 is required for gamma-TuRC recruitment to centrosomes [1].
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Ontology Term
PANTHER:PTHR14534 | VACUOLAR IMPORT AND DEGRADATION PROTEIN 24
 
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Ontology Term
Pfam:PF09783 | Vacuolar import and degradation protein
Description: Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [1][2].
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Ontology Term
PANTHER:PTHR24209 | PROTEIN DA1-RELATED 2
 
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Ontology Term
Pfam:PF07103 | Protein of unknown function (DUF1365)
Description: This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.
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Ontology Term
PANTHER:PTHR11215 | METAL DEPENDENT HYDROLASE - RELATED
 
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Ontology Term
PANTHER:PTHR11215:SF0 | UPF0160 PROTEIN MYG1, MITOCHONDRIAL
 
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Ontology Term
Pfam:PF03690 | Uncharacterised protein family (UPF0160)
Description: This family of proteins contains a large number of metal binding residues. The patterns are suggestive of a phosphoesterase function. The conserved DHH motif may mean this family is related to Pfam:PF01368.
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Ontology Term
PANTHER:PTHR32429 | FAMILY NOT NAMED
 
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Ontology Term
PANTHER:PTHR14145 | 26S PROTESOME SUBUNIT 6
 
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Ontology Term
PANTHER:PTHR14145:SF1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6
 
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Ontology Term
PANTHER:PTHR10825 | RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
 
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Ontology Term
PANTHER:PTHR10825:SF5 | E3 UBIQUITIN-PROTEIN LIGASE RING2
 
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Ontology Term
Pfam:PF13923 | Zinc finger, C3HC4 type (RING finger)
Description: NULL
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Ontology Term
PANTHER:PTHR24067 | UBIQUITIN-CONJUGATING ENZYME E2
 
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Ontology Term
PANTHER:PTHR24067:SF54 | UBIQUITIN-CONJUGATING ENZYME E2 J1
 
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Ontology Term
PANTHER:PTHR24298 | FLAVONOID 3'-MONOOXYGENASE-RELATED
 
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Ontology Term
PANTHER:PTHR12183 | MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1
 
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Ontology Term
PANTHER:PTHR22953 | ACID PHOSPHATASE RELATED
 
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Ontology Term
PANTHER:PTHR22953:SF0 | PURPLE ACID PHOSPHATASE 23
 
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Ontology Term
PANTHER:PTHR10585 | ER LUMEN PROTEIN RETAINING RECEPTOR
 
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Ontology Term
Pfam:PF00810 | ER lumen protein retaining receptor
Description: NULL
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Ontology Term
PANTHER:PTHR13596 | SMALL EDRK-RICH FACTOR 1
 
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Ontology Term
Pfam:PF04419 | 4F5 protein related disordered region
Description: Members of this family are short proteins that are rich in aspartate, glutamate, lysine and arginine. Although the function of these proteins is unknown, they are found to be ubiquitously expressed [1]. This entry is named after the H4F5 protein UniProt:O75920. This region appears to be found at the N-terminus of some longer proteins. Many proteins contain a C-terminal zinc finger domain Pfam:PF12907.
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Ontology Term
Pfam:PF08387 | FBD
Description: This region is found in F-box (Pfam:PF00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes [1]. In fact, several family members are annotated as being similar to transcription factors.
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Ontology Term
Pfam:PF00954 | S-locus glycoprotein domain
Description: In Brassicaceae, self-incompatible plants have a self/non-self recognition system. This is sporophytically controlled by multiple alleles at a single locus (S). S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles [1]. This region is inferred to be a domain due to it having other domains adjacent to it.
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Ontology Term
Pfam:PF01453 | D-mannose binding lectin
Description: These proteins include mannose-specific lectins from plants[1] as well as bacteriocins from bacteria [2].
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Ontology Term
Pfam:PF08276 | PAN-like domain
Description: NULL
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Ontology Term
Pfam:PF07529 | HSA domain
Description: This domain is predicted to bind DNA [1] and is often found associated with helicases. This region does not form a compact domain in the known structures.
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Ontology Term
Pfam:PF02234 | Cyclin-dependent kinase inhibitor
Description: Cell cycle progression is negatively controlled by cyclin-dependent kinases inhibitors (CDIs). CDIs are involved in cell cycle arrest at the G1 phase.
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Ontology Term
Pfam:PF00108 | Thiolase, N-terminal domain
Description: Thiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase.
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Ontology Term
Pfam:PF02803 | Thiolase, C-terminal domain
Description: Thiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase.
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Ontology Term
PANTHER:PTHR12378 | DESUMOYLATING ISOPEPTIDASE
 
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Ontology Term
Pfam:PF05903 | PPPDE putative peptidase domain
Description: The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p) [1].
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Ontology Term
PANTHER:PTHR10383 | SERINE INCORPORATOR
 
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Ontology Term
Pfam:PF03348 | Serine incorporator (Serinc)
Description: This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid [3]. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis [3].
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Ontology Term
Pfam:PF14622 | Ribonuclease-III-like
Description: Members of this family are involved in rDNA transcription and rRNA processing. They probably also cleave a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end; they are involved in polyadenylation-independent transcription termination. Some members may be mitochondrial ribosomal protein subunit L15, others may be 60S ribosomal protein L3.
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Ontology Term
PANTHER:PTHR23324 | SEC14 RELATED PROTEIN
 
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Ontology Term
Pfam:PF00650 | CRAL/TRIO domain
Description: NULL
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Ontology Term
Pfam:PF03765 | CRAL/TRIO, N-terminal domain
Description: This all-alpha domain is found to the N-terminus of Pfam:PF00650.
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Ontology Term
PANTHER:PTHR12610 | SINGLE STRANDED DNA BINDING PROTEIN
 
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Ontology Term
PANTHER:PTHR12610:SF12 | SEQUENCE-SPECIFIC SINGLE-STRANDED DNA-BINDING PROTEIN, ISOFORM D
 
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Ontology Term
Pfam:PF08513 | LisH
Description: The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex [1].
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Ontology Term
PANTHER:PTHR12665 | ORMDL PROTEINS
 
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Ontology Term
Pfam:PF04061 | ORMDL family
Description: Evidence form [1] suggests that ORMDLs are involved in protein folding in the ER. Orm proteins have been identified as negative regulators of sphingolipid synthesis that form a conserved complex with serine palmitoyltransferase, the first and rate-limiting enzyme in sphingolipid production. This novel and conserved protein complex, has been termed the SPOTS complex (serine palmitoyltransferase, Orm1/2, Tsc3, and Sac1).
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Ontology Term
Pfam:PF12452 | Protein of unknown function (DUF3685)
Description: This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. There are two completely conserved residues (L and D) that may be functionally important.
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Ontology Term
PANTHER:PTHR21136 | SNARE PROTEINS
 
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Ontology Term
Pfam:PF13774 | Regulated-SNARE-like domain
Description: Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex [1]. Longins are the only R-SNAREs that are common to all eukaryotes, and they are characterised by a conserved N-terminal domain with a profilin-like fold called a longin domain [2].
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Ontology Term
PANTHER:PTHR21299 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE
 
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Ontology Term
PANTHER:PTHR21299:SF1 | PANTOATE--BETA-ALANINE LIGASE
 
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Ontology Term
Pfam:PF02569 | Pantoate-beta-alanine ligase
Description: Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyses the formation of pantothenate from pantoate and alanine [1].
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Ontology Term
PANTHER:PTHR23083 | TETRATRICOPEPTIDE REPEAT PROTEIN, TPR
 
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Ontology Term
Pfam:PF00515 | Tetratricopeptide repeat
Description: NULL
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Ontology Term
PANTHER:PTHR13516 | RIBONUCLEASE P SUBUNIT P25
 
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Ontology Term
PANTHER:PTHR12380 | SYNTAXIN
 
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Ontology Term
PANTHER:PTHR31197 | OS01G0612600 PROTEIN
 
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Ontology Term
Pfam:PF07800 | Protein of unknown function (DUF1644)
Description: This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, and is probably a zinc-binding domain.
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Ontology Term
PANTHER:PTHR31775 | OS02G0117200 PROTEIN
 
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Ontology Term
Pfam:PF03763 | Remorin, C-terminal region
Description: Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich N-half and a more conserved C-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible.
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Ontology Term
PANTHER:PTHR23257 | SERINE-THREONINE PROTEIN KINASE
 
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Ontology Term
Pfam:PF00564 | PB1 domain
Description: NULL
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Ontology Term
PANTHER:PTHR19297 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
 
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Ontology Term
Pfam:PF02485 | Core-2/I-Branching enzyme
Description: This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (eg Swiss:Q06430) and core-2 branching enzyme (eg Swiss:Q02742). I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development [1]. Core-2 branching enzyme forms crucial side-chain branches in O-glycans [2]. This is a fmmily of glycosyl-transferases that are Type II membrane proteins that are found in the endoplasmic reticulum (ER) and Golgi apparatus [2].
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Ontology Term
PANTHER:PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
 
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Ontology Term
Pfam:PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Description: The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
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Ontology Term
PANTHER:PTHR10492 | UNCHARACTERIZED
 
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Ontology Term
Pfam:PF14214 | Helitron helicase-like domain at N-terminus
Description: This family is found in Helitrons, recently recognised eukaryotic transposons that are predicted to amplify by a rolling-circle mechanism. In many instances a protein-coding gene is disrupted by their insertion.
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Ontology Term
Pfam:PF02151 | UvrB/uvrC motif
Description: NULL
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Ontology Term
Pfam:PF13474 | SnoaL-like domain
Description: This family contains a large number of proteins that share the SnoaL fold.
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Ontology Term
PANTHER:PTHR31390:SF0 | DOMAIN PROTEIN, PUTATIVE (DUF3527)-RELATED
 
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Ontology Term
PANTHER:PTHR20856 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
 
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Ontology Term
Pfam:PF00562 | RNA polymerase Rpb2, domain 6
Description: RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain [1]. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion[1]. This domain is also involved in binding to Rpb1 and Rpb3 [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
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Ontology Term
PANTHER:PTHR10516 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
 
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Ontology Term
PANTHER:PTHR10638 | COPPER AMINE OXIDASE
 
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Ontology Term
Pfam:PF01179 | Copper amine oxidase, enzyme domain
Description: Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). This family corresponds to the catalytic domain of the enzyme.
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