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Search results 101 to 200 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0000834 | mature_transcript_region
Description: A region of a mature transcript.
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SO Term
SO:0000626 | chromosomal_regulatory_element
Description: Regions of the chromosome that are important for regulating binding of chromosomes to the nuclear matrix.
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SO Term
SO:0000036 | matrix_attachment_site
Description: A DNA region that is required for the binding of chromatin to the nuclear matrix.
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SO Term
SO:0001235 | replicon
Description: A region containing at least one unique origin of replication and a unique termination site.
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SO Term
SO:0000830 | chromosome_part
Description: A region of a chromosome.
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SO Term
SO:0000727 | cis_regulatory_module
Description: A regulatory region where transcription factor binding sites are clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundreds of kb upstream of the core promoter, in the coding sequence, within introns, or in the untranslated regions (UTR) sequences, and even on a different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network. CRM DNA accessibility is subject to regulation by dbTFs and transcription co-TFs.
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SO Term
SO:0000037 | locus_control_region
Description: A DNA region that includes DNAse hypersensitive sites located near a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene.
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SO Term
SO:0000343 | match
Description: A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4.
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SO Term
SO:0000039 | match_part
Description: A part of a match, for example an hsp from blast is a match_part.
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SO Term
SO:0000991 | genomic_DNA
Description: DNA located in the genome and able to be transmitted to the offspring.
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SO Term
SO:0000040 | genomic_clone
Description: A clone of a DNA region of a genome.
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SO Term
SO:0000151 | clone
Description: A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism.
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SO Term
SO:0000352 | DNA
Description: An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone.
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SO Term
SO:0000043 | processed_pseudogene
Description: A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail.
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SO Term
SO:0001760 | non_processed_pseudogene
Description: A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations.
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SO Term
SO:0000044 | pseudogene_by_unequal_crossing_over
Description: A pseudogene caused by unequal crossing over at recombination.
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SO Term
SO:0000051 | probe
Description: A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid.
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SO Term
SO:1000182 | chromosome_number_variation
Description: A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number.
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SO Term
SO:0000054 | aneuploid
Description: A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number.
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SO Term
SO:0002072 | sequence_comparison
Description: A position or feature where two sequences have been compared.
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SO Term
SO:0001524 | chromosomally_aberrant_genome
Description: When a genome contains an abnormal amount of chromosomes.
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SO Term
SO:0001507 | variant_collection
Description: A collection of one or more sequences of an individual.
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SO Term
SO:0001260 | sequence_collection
Description: A collection of discontinuous sequences.
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SO Term
SO:0001026 | genome
Description: A genome is the sum of genetic material within a cell or virion.
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SO Term
SO:0000240 | chromosome_variation
Description: A deviation in chromosome structure or number.
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SO Term
SO:0001059 | sequence_alteration
Description: A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence.
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SO Term
SO:0001506 | variant_genome
Description: A collection of sequences (often chromosomes) of an individual.
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SO Term
SO:0000055 | hyperploid
Description: A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present.
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SO Term
SO:0000056 | hypoploid
Description: A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing.
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SO Term
SO:0000057 | operator
Description: A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon.
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SO Term
SO:0000059 | nuclease_binding_site
Description: A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease.
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SO Term
SO:1000042 | compound_chromosome
Description: A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms.
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SO Term
SO:0000060 | compound_chromosome_arm
Description: One arm of a compound chromosome.
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SO Term
SO:1000183 | chromosome_structure_variation
Description: An alteration of the genome that leads to a change in the structure or number of one or more chromosomes.
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SO Term
SO:0000061 | restriction_enzyme_binding_site
Description: A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme.
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SO Term
SO:1000041 | intrachromosomal_transposition
Description: A chromosome structure variation whereby a transposition occurred within a chromosome.
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SO Term
SO:0000062 | deficient_intrachromosomal_transposition
Description: An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining.
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SO Term
SO:1000029 | chromosomal_deletion
Description: An incomplete chromosome.
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SO Term
SO:0000159 | deletion
Description: The point at which one or more contiguous nucleotides were excised.
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SO Term
SO:1000028 | intrachromosomal_mutation
Description: A chromosomal structure variation within a single chromosome.
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SO Term
SO:0000199 | translocation
Description: A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions.
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SO Term
SO:0001785 | structural_alteration
Description: An alteration of the genome that leads to a change in the structure of one or more chromosomes.
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SO Term
SO:0001510 | intrachromosomal
Description: A change in chromosomes that occurs between two separate chromosomes.
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SO Term
SO:0000453 | chromosomal_transposition
Description: A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type.
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SO Term
SO:1000035 | duplication
Description: An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome.
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SO Term
SO:1000037 | chromosomal_duplication
Description: An extra chromosome.
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SO Term
SO:1000038 | intrachromosomal_duplication
Description: A duplication that occurred within a chromosome.
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SO Term
SO:0001508 | alteration_attribute
Description: An attribute of alteration of one or more chromosomes.
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SO Term
SO:0000667 | insertion
Description: The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence.
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SO Term
SO:0001509 | chromosomal_variation_attribute
Description: An attribute of a change in the structure or number of a chromosomes.
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SO Term
SO:1000155 | interchromosomal_transposition
Description: A chromosome structure variation whereby a transposition occurred between chromosomes.
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SO Term
SO:0000063 | deficient_interchromosomal_transposition
Description: An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining.
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SO Term
SO:0001511 | interchromosomal
Description: A change in chromosomes that occurs between two sections of the same chromosome or between homologous chromosomes.
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SO Term
SO:1000031 | interchromosomal_mutation
Description: A chromosomal structure variation whereby more than one chromosome is involved.
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SO Term
SO:0000065 | free_chromosome_arm
Description: A chromosome structure variation whereby an arm exists as an individual chromosome element.
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SO Term
SO:0000067 | gene_to_gene_feature
 
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SO Term
SO:0000068 | overlapping
Description: An attribute describing a gene that has a sequence that overlaps the sequence of another gene.
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SO Term
SO:0000069 | inside_intron
Description: An attribute to describe a gene when it is located within the intron of another gene.
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SO Term
SO:0000070 | inside_intron_antiparallel
Description: An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand.
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SO Term
SO:0000071 | inside_intron_parallel
Description: An attribute to describe a gene when it is located within the intron of another gene and on the same strand.
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SO Term
SO:0000073 | five_prime_three_prime_overlap
Description: An attribute to describe a gene when the five prime region overlaps with another gene's 3' region.
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SO Term
SO:0000074 | five_prime_five_prime_overlap
Description: An attribute to describe a gene when the five prime region overlaps with another gene's five prime region.
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SO Term
SO:0000075 | three_prime_three_prime_overlap
Description: An attribute to describe a gene when the 3' region overlaps with another gene's 3' region.
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SO Term
SO:0000076 | three_prime_five_prime_overlap
Description: An attribute to describe a gene when the 3' region overlaps with another gene's 5' region.
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SO Term
SO:0000077 | antisense
Description: A region sequence that is complementary to a sequence of messenger RNA.
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SO Term
SO:0000078 | polycistronic_transcript
Description: A transcript that is polycistronic.
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SO Term
SO:0000880 | polycistronic
Description: An attribute describing a sequence that contains the code for more than one gene product.
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SO Term
SO:0000237 | transcript_attribute
Description: An attribute describing a transcript.
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SO Term
SO:0000079 | dicistronic_transcript
Description: A transcript that is dicistronic.
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SO Term
SO:0000879 | dicistronic
Description: An attribute describing a sequence that contains the code for two gene products.
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SO Term
SO:0000081 | gene_array_member
 
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SO Term
SO:0000080 | operon_member
Description: A gene that is a member of an operon, which is a set of genes transcribed together as a unit.
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SO Term
SO:0000736 | organelle_sequence
Description: A sequence of DNA that originates from a an organelle.
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SO Term
SO:0000083 | macronuclear_sequence
Description: DNA belonging to the macronuclei of ciliates.
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SO Term
SO:0000735 | sequence_location
Description: The location of a sequence.
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SO Term
SO:0000084 | micronuclear_sequence
Description: DNA belonging to the micronuclei of a cell.
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SO Term
SO:0000738 | nuclear_sequence
Description: DNA belonging to the nuclear genome of cell.
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SO Term
SO:0000087 | nuclear_gene
Description: A gene from nuclear sequence.
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SO Term
SO:0000737 | mitochondrial_sequence
Description: DNA belonging to the genome of a mitochondria.
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SO Term
SO:0000088 | mt_gene
Description: A gene located in mitochondrial sequence.
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SO Term
SO:0000741 | kinetoplast
Description: A kinetoplast is an interlocked network of thousands of minicircles and tens of maxicircles, located near the base of the flagellum of some protozoan species.
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SO Term
SO:0000089 | kinetoplast_gene
Description: A gene located in kinetoplast sequence.
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SO Term
SO:0000740 | plastid_sequence
Description: DNA belonging to the genome of a plastid such as a chloroplast.
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SO Term
SO:0000090 | plastid_gene
Description: A gene from plastid sequence.
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SO Term
SO:0000091 | apicoplast_gene
Description: A gene from apicoplast sequence.
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SO Term
SO:0000743 | apicoplast_sequence
Description: DNA belonging to the genome of an apicoplast, a non-photosynthetic plastid.
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SO Term
SO:0000745 | chloroplast_sequence
Description: DNA belonging to the genome of a chloroplast, a green plastid for photosynthesis.
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SO Term
SO:0000092 | ct_gene
Description: A gene from chloroplast sequence.
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SO Term
SO:0000744 | chromoplast_sequence
Description: DNA belonging to the genome of a chromoplast, a colored plastid for synthesis and storage of pigments.
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SO Term
SO:0000093 | chromoplast_gene
Description: A gene from chromoplast_sequence.
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SO Term
SO:0000746 | cyanelle_sequence
Description: DNA belonging to the genome of a cyanelle, a photosynthetic plastid found in algae.
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SO Term
SO:0000094 | cyanelle_gene
Description: A gene from cyanelle sequence.
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SO Term
SO:0000747 | leucoplast_sequence
Description: DNA belonging to the genome of a leucoplast, a colorless plastid generally containing starch or oil.
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SO Term
SO:0000095 | leucoplast_gene
Description: A plastid gene from leucoplast sequence.
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SO Term
SO:0000096 | proplastid_gene
Description: A gene from proplastid sequence.
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SO Term
SO:0000748 | proplastid_sequence
Description: DNA belonging to the genome of a proplastid such as an immature chloroplast.
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SO Term
SO:0000739 | nucleomorphic_sequence
Description: DNA belonging to the genome of a plastid such as a chloroplast. The nucleomorph is the nuclei of the plastic.
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SO Term
SO:0000097 | nucleomorph_gene
Description: A gene from nucleomorph sequence.
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SO Term
SO:0000749 | plasmid_location
Description: The location of DNA that has come from a plasmid sequence.
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SO Term
SO:0000098 | plasmid_gene
Description: A gene from plasmid sequence.
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