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Search results 1401 to 1500 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0001458 | unigene_cluster
Description: A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene.
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SO Term
SO:0001459 | CRISPR
Description: Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences.
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SO Term
SO:0001460 | insulator_binding_site
Description: A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues.
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SO Term
SO:0001461 | enhancer_binding_site
Description: A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues.
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SO Term
SO:0001462 | contig_collection
Description: A collection of contigs.
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SO Term
SO:0001877 | lncRNA
Description: A non-coding RNA over 200nucleotides in length.
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SO Term
SO:0001463 | lincRNA
Description: Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand.
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SO Term
SO:0001464 | UST
Description: An EST spanning part or all of the untranslated regions of a protein-coding transcript.
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SO Term
SO:0001465 | three_prime_UST
Description: A UST located in the 3'UTR of a protein-coding transcript.
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SO Term
SO:0001466 | five_prime_UST
Description: An UST located in the 5'UTR of a protein-coding transcript.
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SO Term
SO:0001467 | RST
Description: A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long.
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SO Term
SO:0001468 | three_prime_RST
Description: A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long.
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SO Term
SO:0001469 | five_prime_RST
Description: A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long.
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SO Term
SO:0001470 | UST_match
Description: A match against an UST sequence.
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SO Term
SO:0001471 | RST_match
Description: A match against an RST sequence.
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SO Term
SO:0001472 | primer_match
Description: A nucleotide match to a primer sequence.
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SO Term
SO:0001473 | miRNA_antiguide
Description: A region of the pri miRNA that base pairs with the guide to form the hairpin.
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SO Term
SO:0001474 | trans_splice_junction
Description: The boundary between the spliced leader and the first exon of the mRNA.
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SO Term
SO:0001475 | outron
Description: A region of a primary transcript, that is removed via trans splicing.
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SO Term
SO:0001476 | natural_plasmid
Description: A plasmid that occurs naturally.
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SO Term
SO:0001477 | gene_trap_construct
Description: A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker.
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SO Term
SO:0001478 | promoter_trap_construct
Description: A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic.
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SO Term
SO:0001479 | enhancer_trap_construct
Description: An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic.
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SO Term
SO:0001480 | PAC_end
Description: A region of sequence from the end of a PAC clone that may provide a highly specific marker.
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SO Term
SO:0001481 | RAPD
Description: RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers.
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SO Term
SO:0001482 | shadow_enhancer
Description: An enhancer that drives the pattern of transcription and binds to the same TF as the primary enhancer, but is located in the intron of or on the far side of a neighboring gene.
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SO Term
SO:0001484 | X_element_combinatorial_repeat
Description: An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element.
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SO Term
SO:0001485 | Y_prime_element
Description: A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies.
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SO Term
SO:0001499 | whole_genome_sequence_status
Description: The status of whole genome sequence.
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SO Term
SO:0001486 | standard_draft
Description: The status of a whole genome sequence, where the data is minimally filtered or un-filtered, from any number of sequencing platforms, and is assembled into contigs. Genome sequence of this quality may harbour regions of poor quality and can be relatively incomplete.
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SO Term
SO:0001487 | high_quality_draft
Description: The status of a whole genome sequence, where overall coverage represents at least 90 percent of the genome.
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SO Term
SO:0001488 | improved_high_quality_draft
Description: The status of a whole genome sequence, where additional work has been performed, using either manual or automated methods, such as gap resolution.
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SO Term
SO:0001489 | annotation_directed_improved_draft
Description: The status of a whole genome sequence,where annotation, and verification of coding regions has occurred.
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SO Term
SO:0001490 | noncontiguous_finished
Description: The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions.
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SO Term
SO:0001491 | finished_genome
Description: The status of a whole genome sequence, with less than 1 error per 100,000 base pairs.
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SO Term
SO:0001492 | intronic_regulatory_region
Description: A regulatory region that is part of an intron.
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SO Term
SO:0001794 | point_centromere
Description: A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae.
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SO Term
SO:0001493 | centromere_DNA_Element_I
Description: A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p).
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SO Term
SO:0001494 | centromere_DNA_Element_II
Description: A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length.
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SO Term
SO:0001495 | centromere_DNA_Element_III
Description: A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex.
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SO Term
SO:0001496 | telomeric_repeat
Description: The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n.
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SO Term
SO:0001497 | X_element
Description: The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site.
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SO Term
SO:0001498 | YAC_end
Description: A region of sequence from the end of a YAC clone that may provide a highly specific marker.
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SO Term
SO:0001500 | heritable_phenotypic_marker
Description: A biological_region characterized as a single heritable trait in a phenotype screen. The heritable phenotype may be mapped to a chromosome but generally has not been characterized to a specific gene locus.
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SO Term
SO:0001501 | peptide_collection
Description: A collection of peptide sequences.
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SO Term
SO:0001502 | high_identity_region
Description: An experimental feature with high sequence identity to another sequence.
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SO Term
SO:0001503 | processed_transcript
Description: A transcript for which no open reading frame has been identified and for which no other function has been determined.
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SO Term
SO:0001505 | reference_genome
Description: A collection of sequences (often chromosomes) taken as the standard for a given organism and genome assembly.
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SO Term
SO:0001512 | insertion_attribute
Description: A quality of a chromosomal insertion,.
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SO Term
SO:0001513 | tandem
Description: An insertion of extension of a tandem repeat.
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SO Term
SO:0001514 | direct
Description: A quality of an insertion where the insert is not in a cytologically inverted orientation.
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SO Term
SO:0001515 | inverted
Description: A quality of an insertion where the insert is in a cytologically inverted orientation.
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SO Term
SO:0001523 | duplication_attribute
Description: An attribute of a duplication, which is an insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome.
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SO Term
SO:0001516 | free
Description: The quality of a duplication where the new region exists independently of the original.
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SO Term
SO:0001517 | inversion_attribute
Description: When a region of a chromosome is changed to the reverse order without duplication or deletion.
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SO Term
SO:0001518 | pericentric
Description: An inversion event that includes the centromere.
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SO Term
SO:0001519 | paracentric
Description: An inversion event that does not include the centromere.
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SO Term
SO:0001520 | translocaton_attribute
Description: An attribute of a translocation, which is then a region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions.
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SO Term
SO:0001521 | reciprocal
Description: When translocation occurs between nonhomologous chromosomes and involved an equal exchange of genetic materials.
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SO Term
SO:0001522 | insertional
Description: When a translocation is simply moving genetic material from one chromosome to another.
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SO Term
SO:0001525 | assembly_error_correction
Description: A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake.
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SO Term
SO:0001526 | base_call_error_correction
Description: A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake.
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SO Term
SO:0001528 | nuclear_localization_signal
Description: A polypeptide region that targets a polypeptide to the nucleus.
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SO Term
SO:0001529 | endosomal_localization_signal
Description: A polypeptide region that targets a polypeptide to the endosome.
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SO Term
SO:0001530 | lysosomal_localization_signal
Description: A polypeptide region that targets a polypeptide to the lysosome.
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SO Term
SO:0001531 | nuclear_export_signal
Description: A polypeptide region that targets a polypeptide to he cytoplasm.
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SO Term
SO:0001532 | recombination_signal_sequence
Description: A region recognized by a recombinase.
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SO Term
SO:0001533 | cryptic_splice_site
Description: A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error.
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SO Term
SO:0001534 | nuclear_rim_localization_signal
Description: A polypeptide region that targets a polypeptide to the nuclear rim.
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SO Term
SO:0001535 | P_TIR_transposon
Description: A P-element is a DNA transposon responsible for hybrid dysgenesis. P elements in this terminal inverted repeat (TIR) transposon superfamily have 31 bp perfect TIR and upon insertion duplicate an 8 bp sequence. It contains transposase that may lack the DDE domain.
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SO Term
SO:0001536 | functional_effect_variant
Description: A variant whereby the effect is evaluated with respect to a reference.
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SO Term
SO:0002218 | functionally_abnormal
Description: A sequence variant in which the function of a gene product is altered with respect to a reference.
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SO Term
SO:0001538 | transcript_function_variant
Description: A sequence variant which alters the functioning of a transcript with respect to a reference sequence.
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SO Term
SO:0001539 | translational_product_function_variant
Description: A sequence variant that affects the functioning of a translational product with respect to a reference sequence.
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SO Term
SO:0001540 | level_of_transcript_variant
Description: A sequence variant which alters the level of a transcript.
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SO Term
SO:0001541 | decreased_transcript_level_variant
Description: A sequence variant that decreases the level of mature, spliced and processed RNA with respect to a reference sequence.
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SO Term
SO:0001542 | increased_transcript_level_variant
Description: A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence.
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SO Term
SO:0001543 | transcript_processing_variant
Description: A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence.
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SO Term
SO:0001544 | editing_variant
Description: A transcript processing variant whereby the process of editing is disrupted with respect to the reference.
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SO Term
SO:0001545 | polyadenylation_variant
Description: A sequence variant that changes polyadenylation with respect to a reference sequence.
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SO Term
SO:0001546 | transcript_stability_variant
Description: A variant that changes the stability of a transcript with respect to a reference sequence.
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SO Term
SO:0001547 | decreased_transcript_stability_variant
Description: A sequence variant that decreases transcript stability with respect to a reference sequence.
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SO Term
SO:0001548 | increased_transcript_stability_variant
Description: A sequence variant that increases transcript stability with respect to a reference sequence.
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SO Term
SO:0001549 | transcription_variant
Description: A variant that changes alters the transcription of a transcript with respect to a reference sequence.
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SO Term
SO:0001550 | rate_of_transcription_variant
Description: A sequence variant that changes the rate of transcription with respect to a reference sequence.
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SO Term
SO:0001551 | increased_transcription_rate_variant
Description: A sequence variant that increases the rate of transcription with respect to a reference sequence.
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SO Term
SO:0001552 | decreased_transcription_rate_variant
Description: A sequence variant that decreases the rate of transcription with respect to a reference sequence.
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SO Term
SO:0001553 | translational_product_level_variant
Description: A functional variant that changes the translational product level with respect to a reference sequence.
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SO Term
SO:0001554 | polypeptide_function_variant
Description: A sequence variant which changes polypeptide functioning with respect to a reference sequence.
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SO Term
SO:0001555 | decreased_translational_product_level
Description: A sequence variant which decreases the translational product level with respect to a reference sequence.
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SO Term
SO:0001556 | increased_translational_product_level
Description: A sequence variant which increases the translational product level with respect to a reference sequence.
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SO Term
SO:0001557 | polypeptide_gain_of_function_variant
Description: A sequence variant which causes gain of polypeptide function with respect to a reference sequence.
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SO Term
SO:0001558 | polypeptide_localization_variant
Description: A sequence variant which changes the localization of a polypeptide with respect to a reference sequence.
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SO Term
SO:0001559 | polypeptide_loss_of_function_variant
Description: A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence.
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SO Term
SO:0001560 | inactive_ligand_binding_site
Description: A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence.
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SO Term
SO:0001561 | polypeptide_partial_loss_of_function
Description: A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence.
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SO Term
SO:0001562 | polypeptide_post_translational_processing_variant
Description: A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence.
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SO Term
SO:0002160 | sequence_length_variant
Description: A sequence variant that changes the length of one or more sequence features.
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SO Term
SO:0001563 | copy_number_change
Description: A sequence variant where copies of a feature (CNV) are either increased or decreased.
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SO Term
SO:0001564 | gene_variant
Description: A sequence variant where the structure of the gene is changed.
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