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Search results 2301 to 2386 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:1000014 | purine_transition
Description: A substitution of a purine, A or G, for another purine.
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SO Term
SO:1000015 | A_to_G_transition
Description: A transition of an adenine to a guanine.
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SO Term
SO:1000016 | G_to_A_transition
Description: A transition of a guanine to an adenine.
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SO Term
SO:1000017 | transversion
Description: Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa.
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SO Term
SO:1000018 | pyrimidine_to_purine_transversion
Description: Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G.
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SO Term
SO:1000019 | C_to_A_transversion
Description: A transversion from cytidine to adenine.
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SO Term
SO:1000020 | C_to_G_transversion
Description: A transversion of a cytidine to a guanine.
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SO Term
SO:1000021 | T_to_A_transversion
Description: A transversion from T to A.
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SO Term
SO:1000022 | T_to_G_transversion
Description: A transversion from T to G.
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SO Term
SO:1000023 | purine_to_pyrimidine_transversion
Description: Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T.
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SO Term
SO:1000024 | A_to_C_transversion
Description: A transversion from adenine to cytidine.
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SO Term
SO:1000025 | A_to_T_transversion
Description: A transversion from adenine to thymine.
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SO Term
SO:1000026 | G_to_C_transversion
Description: A transversion from guanine to cytidine.
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SO Term
SO:1000027 | G_to_T_transversion
Description: A transversion from guanine to thymine.
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SO Term
SO:1000032 | delins
Description: A sequence alteration which included an insertion and a deletion, affecting 2 or more bases.
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SO Term
SO:1000173 | tandem_duplication
Description: A duplication consisting of 2 identical adjacent regions.
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SO Term
SO:1000039 | direct_tandem_duplication
Description: A tandem duplication where the individual regions are in the same orientation.
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SO Term
SO:1000040 | inverted_tandem_duplication
Description: A tandem duplication where the individual regions are not in the same orientation.
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SO Term
SO:1000043 | Robertsonian_fusion
Description: A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere.
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SO Term
SO:1000046 | pericentric_inversion
Description: A chromosomal inversion that includes the centromere.
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SO Term
SO:1000047 | paracentric_inversion
Description: A chromosomal inversion that does not include the centromere.
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SO Term
SO:1000048 | reciprocal_chromosomal_translocation
Description: A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged.
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SO Term
SO:1000136 | autosynaptic_chromosome
Description: An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome.
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SO Term
SO:1000138 | homo_compound_chromosome
Description: A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved.
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SO Term
SO:1000140 | hetero_compound_chromosome
Description: A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them.
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SO Term
SO:1000141 | chromosome_fission
Description: A chromosome that occurred by the division of a larger chromosome.
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SO Term
SO:1000142 | dextrosynaptic_chromosome
Description: An autosynaptic chromosome carrying the two right (D = dextro) telomeres.
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SO Term
SO:1000143 | laevosynaptic_chromosome
Description: LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres.
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SO Term
SO:1000144 | free_duplication
Description: A chromosome structure variation whereby the duplicated sequences are carried as a free centric element.
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SO Term
SO:1000145 | free_ring_duplication
Description: A ring chromosome which is a copy of another chromosome.
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SO Term
SO:1000147 | deficient_translocation
Description: A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining.
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SO Term
SO:1000148 | inversion_cum_translocation
Description: A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break.
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SO Term
SO:1000149 | bipartite_duplication
Description: An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break.
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SO Term
SO:1000150 | cyclic_translocation
Description: A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third.
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SO Term
SO:1000151 | bipartite_inversion
Description: A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed).
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SO Term
SO:1000154 | insertional_duplication
Description: A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication).
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SO Term
SO:1000152 | uninverted_insertional_duplication
Description: An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments.
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SO Term
SO:1000153 | inverted_insertional_duplication
Description: An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments.
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SO Term
SO:1000156 | inverted_interchromosomal_transposition
Description: An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment.
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SO Term
SO:1000157 | uninverted_interchromosomal_transposition
Description: An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments.
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SO Term
SO:1000158 | inverted_intrachromosomal_transposition
Description: An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments.
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SO Term
SO:1000159 | uninverted_intrachromosomal_transposition
Description: An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments.
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SO Term
SO:1000160 | unoriented_insertional_duplication
Description: An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded.
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SO Term
SO:1000161 | unoriented_interchromosomal_transposition
Description: An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded.
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SO Term
SO:1000162 | unoriented_intrachromosomal_transposition
Description: An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded.
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SO Term
SO:1000170 | uncharacterized_chromosomal_mutation
Description: A chromosome structure variant that has not been characterized.
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SO Term
SO:1000171 | deficient_inversion
Description: A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted.
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SO Term
SO:1000175 | partially_characterized_chromosomal_mutation
Description: A chromosome structure variant that has not been characterized fully.
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SO Term
SO:1001187 | alternatively_spliced_transcript
Description: A transcript that is alternatively spliced.
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SO Term
SO:1001188 | encodes_1_polypeptide
Description: A gene that is alternately spliced, but encodes only one polypeptide.
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SO Term
SO:1001189 | encodes_greater_than_1_polypeptide
Description: A gene that is alternately spliced, and encodes more than one polypeptide.
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SO Term
SO:1001195 | encodes_overlapping_peptides
Description: A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences.
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SO Term
SO:1001190 | encodes_different_polypeptides_different_stop
Description: A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons.
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SO Term
SO:1001191 | encodes_overlapping_peptides_different_start
Description: A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons.
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SO Term
SO:1001192 | encodes_disjoint_polypeptides
Description: A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences.
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SO Term
SO:1001193 | encodes_overlapping_polypeptides_different_start_and_stop
Description: A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons.
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SO Term
SO:1001196 | cryptogene
Description: A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence.
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SO Term
SO:1001217 | member_of_regulon
Description: A gene that is a member of a group of genes that are either regulated or transcribed together.
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SO Term
SO:1001246 | CDS_independently_known
Description: A CDS with the evidence status of being independently known.
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SO Term
SO:1001247 | orphan_CDS
Description: A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence.
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SO Term
SO:1001249 | CDS_supported_by_domain_match_data
Description: A CDS that is supported by domain similarity.
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SO Term
SO:1001259 | CDS_supported_by_EST_or_cDNA_data
Description: A CDS that is supported by similarity to EST or cDNA data.
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SO Term
SO:1001260 | internal_Shine_Dalgarno_sequence
Description: A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria.
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SO Term
SO:1001261 | recoded_mRNA
Description: The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals.
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SO Term
SO:1001262 | minus_1_translationally_frameshifted
Description: An attribute describing a translational frameshift of -1.
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SO Term
SO:1001263 | plus_1_translationally_frameshifted
Description: An attribute describing a translational frameshift of +1.
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SO Term
SO:1001264 | mRNA_recoded_by_translational_bypass
Description: A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon.
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SO Term
SO:1001265 | mRNA_recoded_by_codon_redefinition
Description: A recoded_mRNA that was modified by an alteration of codon meaning.
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SO Term
SO:1001269 | four_bp_start_codon
Description: A non-canonical start codon with 4 base pairs.
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SO Term
SO:1001271 | archaeal_intron
Description: An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease.
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SO Term
SO:1001272 | tRNA_intron
Description: An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification.
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SO Term
SO:1001273 | CTG_start_codon
Description: A non-canonical start codon of sequence CTG.
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SO Term
SO:1001274 | SECIS_element
Description: The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes.
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SO Term
SO:1001275 | retron
Description: Sequence coding for a short, single-stranded, DNA sequence via a retrotransposed RNA intermediate; characteristic of some microbial genomes.
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SO Term
SO:1001277 | three_prime_recoding_site
Description: The recoding stimulatory signal located downstream of the recoding site.
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SO Term
SO:1001279 | three_prime_stem_loop_structure
Description: A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region.
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SO Term
SO:1001280 | five_prime_recoding_site
Description: The recoding stimulatory signal located upstream of the recoding site.
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SO Term
SO:1001281 | flanking_three_prime_quadruplet_recoding_signal
Description: Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons.
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SO Term
SO:1001288 | stop_codon_signal
Description: A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding.
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SO Term
SO:1001282 | UAG_stop_codon_signal
Description: A stop codon signal for a UAG stop codon redefinition.
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SO Term
SO:1001283 | UAA_stop_codon_signal
Description: A stop codon signal for a UAA stop codon redefinition.
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SO Term
SO:1001285 | UGA_stop_codon_signal
Description: A stop codon signal for a UGA stop codon redefinition.
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SO Term
SO:1001286 | three_prime_repeat_recoding_signal
Description: A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements.
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SO Term
SO:1001287 | distant_three_prime_recoding_signal
Description: A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon.
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SO Term
SO:2000061 | databank_entry
Description: The sequence referred to by an entry in a databank such as GenBank or SwissProt.
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SO Term
SO:0001645 | genetic_marker
Description: A measurable sequence feature that varies within a population.
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