GlycineMine: Keyword Search

SO Term

Description:

The DNA region of a group of adjacent genes whose transcription is coordinated on one or several mutually overlapping transcription units transcribed in the same direction and sharing at least one gene.

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SO Term

SO:0000179 | clone_insert_start

Description:

The start of the clone insert.

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SO Term

SO:0000180 | retrotransposon

Description:

A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase.

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SO Term

SO:0000181 | translated_nucleotide_match

Description:

A match against a translated sequence.

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SO Term

SO:0000182 | DNA_transposon

Description:

A transposon where the mechanism of transposition is via a DNA intermediate.

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SO Term

SO:0000183 | non_transcribed_region

Description:

A region of the gene which is not transcribed.

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SO Term

SO:0000662 | spliceosomal_intron

Description:

An intron which is spliced by the spliceosome.

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SO Term

SO:0000184 | U2_intron

Description:

A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs.

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SO Term

SO:0000188 | intron

Description:

A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it.

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SO Term

SO:0000186 | LTR_retrotransposon

Description:

A retrotransposon flanked by long terminal repeat sequences.

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SO Term

SO:0000189 | non_LTR_retrotransposon

Description:

A retrotransposon without long terminal repeat sequences.

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SO Term

SO:0000190 | five_prime_intron

Description:

An intron that is the most 5-prime in a given transcript.

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SO Term

SO:0000191 | interior_intron

Description:

An intron that is not the most 3-prime or the most 5-prime in a given transcript.

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SO Term

SO:0000192 | three_prime_intron

Description:

An intron that is the most 3-prime in a given transcript.

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SO Term

SO:0000412 | restriction_fragment

Description:

A region of polynucleotide sequence produced by digestion with a restriction endonuclease.

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SO Term

SO:0000193 | RFLP_fragment

Description:

A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme.

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SO Term

SO:0000194 | LINE_element

Description:

A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats.

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SO Term

SO:0000200 | five_prime_coding_exon

Description:

The 5' most coding exon.

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SO Term

SO:0000196 | five_prime_coding_exon_coding_region

Description:

The sequence of the five_prime_coding_exon that codes for protein.

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SO Term

SO:0001215 | coding_region_of_exon

Description:

The region of an exon that encodes for protein sequence.

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SO Term

SO:0000852 | exon_region

Description:

A region of an exon.

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SO Term

SO:0000202 | three_prime_coding_exon

Description:

The coding exon that is most 3-prime on a given transcript.

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SO Term

SO:0000197 | three_prime_coding_exon_coding_region

Description:

The sequence of the three_prime_coding_exon that codes for protein.

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SO Term

SO:0000198 | noncoding_exon

Description:

An exon that does not contain any codons.

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SO Term

SO:0000201 | interior_exon

Description:

An exon that is bounded by 5' and 3' splice sites.

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SO Term

SO:0000206 | SINE_element

Description:

A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element.

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SO Term

SO:0000248 | sequence_length_alteration

Description:

A kind of kind of sequence alteration where the copies of a region present varies across a population.

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SO Term

SO:0000207 | simple_sequence_length_variation

Description:

SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ.

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SO Term

SO:0000208 | terminal_inverted_repeat_element

Description:

A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long.

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SO Term

SO:0000209 | rRNA_primary_transcript

Description:

A primary transcript encoding a ribosomal RNA.

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SO Term

SO:0000210 | tRNA_primary_transcript

Description:

A primary transcript encoding a transfer RNA (SO:0000253).

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SO Term

SO:0000211 | alanine_tRNA_primary_transcript

Description:

A primary transcript encoding alanyl tRNA.

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SO Term

SO:0000212 | arginine_tRNA_primary_transcript

Description:

A primary transcript encoding arginyl tRNA (SO:0000255).

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SO Term

SO:0000213 | asparagine_tRNA_primary_transcript

Description:

A primary transcript encoding asparaginyl tRNA (SO:0000256).

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SO Term

SO:0000214 | aspartic_acid_tRNA_primary_transcript

Description:

A primary transcript encoding aspartyl tRNA (SO:0000257).

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SO Term

SO:0000215 | cysteine_tRNA_primary_transcript

Description:

A primary transcript encoding cysteinyl tRNA (SO:0000258).

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SO Term

SO:0000216 | glutamic_acid_tRNA_primary_transcript

Description:

A primary transcript encoding glutaminyl tRNA (SO:0000260).

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SO Term

SO:0000217 | glutamine_tRNA_primary_transcript

Description:

A primary transcript encoding glutamyl tRNA (SO:0000260).

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SO Term

SO:0000218 | glycine_tRNA_primary_transcript

Description:

A primary transcript encoding glycyl tRNA (SO:0000263).

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SO Term

SO:0000219 | histidine_tRNA_primary_transcript

Description:

A primary transcript encoding histidyl tRNA (SO:0000262).

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SO Term

SO:0000220 | isoleucine_tRNA_primary_transcript

Description:

A primary transcript encoding isoleucyl tRNA (SO:0000263).

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SO Term

SO:0000221 | leucine_tRNA_primary_transcript

Description:

A primary transcript encoding leucyl tRNA (SO:0000264).

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SO Term

SO:0000222 | lysine_tRNA_primary_transcript

Description:

A primary transcript encoding lysyl tRNA (SO:0000265).

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SO Term

SO:0000223 | methionine_tRNA_primary_transcript

Description:

A primary transcript encoding methionyl tRNA (SO:0000266).

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SO Term

SO:0000224 | phenylalanine_tRNA_primary_transcript

Description:

A primary transcript encoding phenylalanyl tRNA (SO:0000267).

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SO Term

SO:0000225 | proline_tRNA_primary_transcript

Description:

A primary transcript encoding prolyl tRNA (SO:0000268).

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SO Term

SO:0000226 | serine_tRNA_primary_transcript

Description:

A primary transcript encoding seryl tRNA (SO:000269).

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SO Term

SO:0000227 | threonine_tRNA_primary_transcript

Description:

A primary transcript encoding threonyl tRNA (SO:000270).

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SO Term

SO:0000228 | tryptophan_tRNA_primary_transcript

Description:

A primary transcript encoding tryptophanyl tRNA (SO:000271).

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SO Term

SO:0000229 | tyrosine_tRNA_primary_transcript

Description:

A primary transcript encoding tyrosyl tRNA (SO:000272).

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SO Term

SO:0000230 | valine_tRNA_primary_transcript

Description:

A primary transcript encoding valyl tRNA (SO:000273).

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SO Term

SO:0000231 | snRNA_primary_transcript

Description:

A primary transcript encoding a small nuclear RNA (SO:0000274).

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SO Term

SO:0000232 | snoRNA_primary_transcript

Description:

A primary transcript encoding one or more small nucleolar RNAs (SO:0000275).

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SO Term

SO:0000717 | reading_frame

Description:

A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon.

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SO Term

SO:0000236 | ORF

Description:

The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER.

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SO Term

SO:0000238 | foldback_element

Description:

A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats.

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SO Term

SO:0001412 | topologically_defined_region

Description:

A DNA region within which self-interaction occurs more often than expected by chance because of DNA-looping.

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SO Term

SO:0000239 | flanking_region

Description:

The sequences extending on either side of a specific region.

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SO Term

SO:0000241 | internal_UTR

Description:

A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal.

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SO Term

SO:0000242 | untranslated_region_polycistronic_mRNA

Description:

The untranslated sequence separating the 'cistrons' of multicistronic mRNA.

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SO Term

SO:0000243 | internal_ribosome_entry_site

Description:

Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation.

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SO Term

SO:0000246 | polyadenylated

Description:

A attribute describing the addition of a poly A tail to the 3' end of a mRNA molecule.

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SO Term

SO:0000250 | modified_RNA_base_feature

Description:

A post_transcriptionally modified base.

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SO Term

SO:0002247 | sncRNA

Description:

A non-coding RNA less than 200 nucleotides in length.

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SO Term

SO:0000254 | alanyl_tRNA

Description:

A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region.

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SO Term

SO:0000255 | rRNA_small_subunit_primary_transcript

Description:

A primary transcript encoding a small ribosomal subunit RNA.

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SO Term

SO:0000256 | asparaginyl_tRNA

Description:

A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region.

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SO Term

SO:0000257 | aspartyl_tRNA

Description:

A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region.

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SO Term

SO:0000258 | cysteinyl_tRNA

Description:

A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region.

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SO Term

SO:0000259 | glutaminyl_tRNA

Description:

A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region.

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SO Term

SO:0000260 | glutamyl_tRNA

Description:

A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region.

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SO Term

SO:0000261 | glycyl_tRNA

Description:

A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region.

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SO Term

SO:0000262 | histidyl_tRNA

Description:

A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region.

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SO Term

SO:0000263 | isoleucyl_tRNA

Description:

A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region.

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SO Term

SO:0000264 | leucyl_tRNA

Description:

A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region.

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SO Term

SO:0000265 | lysyl_tRNA

Description:

A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region.

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SO Term

SO:0000266 | methionyl_tRNA

Description:

A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region.

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SO Term

SO:0000267 | phenylalanyl_tRNA

Description:

A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region.

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SO Term

SO:0000268 | prolyl_tRNA

Description:

A tRNA sequence that has a proline anticodon, and a 3' proline binding region.

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SO Term

SO:0000269 | seryl_tRNA

Description:

A tRNA sequence that has a serine anticodon, and a 3' serine binding region.

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SO Term

SO:0000270 | threonyl_tRNA

Description:

A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region.

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SO Term

SO:0000271 | tryptophanyl_tRNA

Description:

A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region.

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SO Term

SO:0000272 | tyrosyl_tRNA

Description:

A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region.

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SO Term

SO:0000273 | valyl_tRNA

Description:

A tRNA sequence that has a valine anticodon, and a 3' valine binding region.

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SO Term

SO:0000370 | small_regulatory_ncRNA

Description:

A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others).

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SO Term

SO:0001244 | pre_miRNA

Description:

The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure.

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SO Term

SO:0001243 | miRNA_primary_transcript_region

Description:

A part of an miRNA primary_transcript.

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SO Term

SO:0000278 | transcript_bound_by_nucleic_acid

Description:

A transcript that is bound by a nucleic acid.

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SO Term

SO:0000876 | bound_by_nucleic_acid

Description:

An attribute describing a sequence that is bound by a nucleic acid.

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SO Term

SO:0000875 | bound_by_protein

Description:

An attribute describing a sequence that is bound by a protein.

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SO Term

SO:0000279 | transcript_bound_by_protein

Description:

A transcript that is bound by a protein.

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SO Term

SO:0000804 | engineered_region

Description:

A region that is engineered.

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SO Term

SO:0000280 | engineered_gene

Description:

A gene that is engineered.

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SO Term

SO:0000783 | engineered

Description:

An attribute to describe a region that was modified in vitro.

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SO Term

SO:0000281 | engineered_foreign_gene

Description:

A gene that is engineered and foreign.

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SO Term

SO:0000805 | engineered_foreign_region

Description:

A region that is engineered and foreign.

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SO Term

SO:0000285 | foreign_gene

Description:

A gene that is foreign.

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SO Term

SO:0000784 | foreign

Description:

An attribute to describe a region from another species.

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SO Term

SO:0000282 | mRNA_with_minus_1_frameshift

Description:

An mRNA with a minus 1 frameshift.

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SO Term

SO:0000866 | minus_1_frameshift

Description:

A frameshift caused by deleting one base.

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