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Search results 601 to 700 out of 2386 for *

Category restricted to SOTerm (x)

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Categories

Category: SOTerm
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Type Details Score
SO Term
SO:0000463 | encodes_alternately_spliced_transcripts
Description: A gene that encodes more than one transcript.
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SO Term
SO:0000464 | decayed_exon
Description: A non-functional descendant of an exon.
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SO Term
SO:0000465 | inversion_derived_deficiency_plus_duplication
Description: A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion.
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SO Term
SO:0000466 | V_gene_segment
Description: Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR.
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SO Term
SO:0000467 | post_translationally_regulated_by_protein_stability
Description: An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein.
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SO Term
SO:0000468 | golden_path_fragment
Description: One of the pieces of sequence that make up a golden path.
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SO Term
SO:0000688 | golden_path
Description: A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence.
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SO Term
SO:0000469 | post_translationally_regulated_by_protein_modification
Description: An attribute describing a gene sequence where the resulting protein is modified to regulate it.
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SO Term
SO:0000470 | J_gene_segment
Description: Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment.
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SO Term
SO:0000471 | autoregulated
Description: The gene product is involved in its own transcriptional regulation.
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SO Term
SO:0000472 | tiling_path
Description: A set of regions which overlap with minimal polymorphism to form a linear sequence.
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SO Term
SO:0000473 | negatively_autoregulated
Description: The gene product is involved in its own transcriptional regulation where it decreases transcription.
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SO Term
SO:0000474 | tiling_path_fragment
Description: A piece of sequence that makes up a tiling_path (SO:0000472).
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SO Term
SO:0000475 | positively_autoregulated
Description: The gene product is involved in its own transcriptional regulation, where it increases transcription.
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SO Term
SO:0000476 | contig_read
Description: A DNA sequencer read which is part of a contig.
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SO Term
SO:0000478 | C_gene_segment
Description: Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205).
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SO Term
SO:0000870 | trans_spliced
Description: An attribute describing transcript sequence that is created by splicing exons from diferent genes.
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SO Term
SO:0000480 | tiling_path_clone
Description: A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly.
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SO Term
SO:0000482 | vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration.
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SO Term
SO:0001214 | noncoding_region_of_exon
Description: The maximal intersection of exon and UTR.
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SO Term
SO:0000484 | three_prime_coding_exon_noncoding_region
Description: The sequence of the 3' exon that is not coding.
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SO Term
SO:0000485 | DJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene.
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SO Term
SO:0000938 | vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration.
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SO Term
SO:0000572 | DJ_gene_segment
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment.
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SO Term
SO:0000936 | vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA.
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SO Term
SO:0000486 | five_prime_coding_exon_noncoding_region
Description: The sequence of the 5' exon preceding the start codon.
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SO Term
SO:0000574 | VDJ_gene_segment
Description: Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205).
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SO Term
SO:0000487 | VDJ_J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene.
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SO Term
SO:0000488 | VDJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene.
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SO Term
SO:0000576 | VJ_gene_segment
Description: Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205).
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SO Term
SO:0000489 | VJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene.
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SO Term
SO:0000490 | VJ_J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene.
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SO Term
SO:0000491 | VJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene.
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SO Term
SO:0000492 | D_gene_recombination_feature
Description: Recombination signal including D-heptamer, D-spacer and D-nonamer in 5' of D-region of a D-gene or D-sequence.
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SO Term
SO:0000561 | heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
Description: Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene.
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SO Term
SO:0000493 | three_prime_D_heptamer
Description: 7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000570 | three_prime_D_recombination_signal_sequence
Description: Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene.
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SO Term
SO:0000562 | nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
Description: Nine nucleotide recombination site, part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene.
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SO Term
SO:0000494 | three_prime_D_nonamer
Description: A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000563 | vertebrate_immune_system_gene_recombination_spacer
Description: A 12 or 23 nucleotide spacer between two regions of an immunoglobulin/T-cell receptor gene that may be rearranged by recombinase.
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SO Term
SO:0000495 | three_prime_D_spacer
Description: A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS.
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SO Term
SO:0000496 | five_prime_D_heptamer
Description: 7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000556 | five_prime_D_recombination_signal_sequence
Description: Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene.
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SO Term
SO:0000497 | five_prime_D_nonamer
Description: 9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000498 | five_prime_D_spacer
Description: 12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000499 | virtual_sequence
Description: A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database.
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SO Term
SO:0000500 | Hoogsteen_base_pair
Description: A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds.
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SO Term
SO:0000501 | reverse_Hoogsteen_base_pair
Description: A type of non-canonical base-pairing.
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SO Term
SO:0000504 | D_DJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene.
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SO Term
SO:0000505 | D_DJ_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene.
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SO Term
SO:0000506 | D_DJ_J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene.
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SO Term
SO:0000507 | pseudogenic_exon
Description: A non functional descendant of an exon, part of a pseudogene.
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SO Term
SO:0000516 | pseudogenic_transcript
Description: A non functional descendant of a transcript, part of a pseudogene.
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SO Term
SO:0000508 | D_DJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene.
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SO Term
SO:0000509 | D_J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene.
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SO Term
SO:0000510 | VD_gene_segment
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205).
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SO Term
SO:0000511 | J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene.
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SO Term
SO:0000512 | inversion_derived_deficiency_plus_aneuploid
Description: A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion.
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SO Term
SO:0000513 | J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene.
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SO Term
SO:0000514 | J_nonamer
Description: 9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000515 | J_heptamer
Description: 7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000517 | J_spacer
Description: 12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000518 | V_DJ_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene.
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SO Term
SO:0000519 | V_DJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene.
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SO Term
SO:0000520 | V_VDJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene.
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SO Term
SO:0000521 | V_VDJ_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene.
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SO Term
SO:0000522 | V_VDJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene.
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SO Term
SO:0000523 | V_VJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene.
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SO Term
SO:0000524 | V_VJ_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene.
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SO Term
SO:0000525 | V_VJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene.
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SO Term
SO:0000526 | V_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene.
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SO Term
SO:0000527 | V_D_DJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene.
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SO Term
SO:0000528 | V_D_DJ_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene.
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SO Term
SO:0000529 | V_D_DJ_J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene.
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SO Term
SO:0000530 | V_D_DJ_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene.
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SO Term
SO:0000531 | V_D_J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene.
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SO Term
SO:0000532 | V_D_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene.
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SO Term
SO:0000533 | V_heptamer
Description: 7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000538 | V_gene_recombination_feature
Description: Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000534 | V_J_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene.
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SO Term
SO:0000535 | V_J_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene.
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SO Term
SO:0000536 | V_nonamer
Description: 9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000537 | V_spacer
Description: 12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene.
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SO Term
SO:0000539 | DJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene.
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SO Term
SO:0000540 | DJ_J_C_cluster
Description: Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE.
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SO Term
SO:0000541 | VDJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene.
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SO Term
SO:0000542 | V_DJ_C_cluster
Description: Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene.
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SO Term
SO:0000544 | helitron
Description: A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons.
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SO Term
SO:0000591 | pseudoknot
Description: A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop.
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SO Term
SO:0000545 | recoding_pseudoknot
Description: The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding.
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SO Term
SO:1001268 | recoding_stimulatory_region
Description: A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA.
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SO Term
SO:0000546 | designed_sequence
Description: An oligonucleotide sequence that was designed by an experimenter that may or may not correspond with any natural sequence.
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SO Term
SO:0000547 | inversion_derived_bipartite_duplication
Description: A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion.
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SO Term
SO:0000548 | gene_with_edited_transcript
Description: A gene that encodes a transcript that is edited.
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SO Term
SO:0000873 | edited_transcript
Description: A transcript that is edited.
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SO Term
SO:0000549 | inversion_derived_duplication_plus_aneuploid
Description: A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion.
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SO Term
SO:0000550 | aneuploid_chromosome
Description: A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking.
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SO Term
SO:0000551 | polyA_signal_sequence
Description: The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA.
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SO Term
SO:0000552 | Shine_Dalgarno_sequence
Description: A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex.
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SO Term
SO:0000553 | polyA_site
Description: The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence.
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