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Search results 1 to 100 out of 354 for "seed oil"

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Type Details Score
Ontology Term Synonym
seed oil body organization
Type: synonym
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Protein Domain
IPR043367
Name: Phospholipase A1 PLIP1/2/3, chloroplastic
Type: Family
Description: This entry includes a group of plant glycerolipid A1 lipases, including PLIP1/2/3 from Arabidopsis. PLIP1 is a plastid phospholipase A1 that releases polyunsaturated fatty acids from chloroplast phosphatidylglycerol, leading to the export of the fatty acids to the ER for seed oil biosynthesis [ ]. PLIP2/3 are also present in the chloroplasts. They respond to ABA and are involved in jasmonic acid biosynthesis [].
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Ontology Term
SOY:0001668 | Seed oil content
Description: Oil content of a seed.
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Ontology Term
CO_336:0000048 | Seed oil content
Description: Oil content of soybean seed
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GO Term
GO:0010344 | seed oilbody biogenesis
Description: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a seed oilbody. Seed oilbodies are simple organelles comprising a matrix of triglyceride surrounded by a phospholipid monolayer embedded and covered with unique proteins called oleosins. Seed oilbodies supply the energy requirements for the growth of the seedling after germination.
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Ontology Term
CO_336:0000120 | Seed stearic acid content
Description: Stearic acid content of the seed oil i.e., stearic acid weight per total oil weight of the seed
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Ontology Term
CO_336:0000114 | Seed oleic acid content
Description: Oleic acid content of the seed oil i.e., palmitic acid weight per total oil weight of the seed
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Ontology Term
CO_336:0000111 | Seed palmitic acid content
Description: Palmitic acid content of the seed oil i.e., palmitic acid weight per total oil weight of the seed
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Ontology Term
CO_336:0000108 | Seed linolenic acid content
Description: Linolenic acid content of the seed oil i.e., linolenic acid weight per total oil weight of the seed
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Ontology Term
CO_336:0000105 | Seed linoleic acid content
Description: Linoleic acid content of the seed oil i.e., linoleic acid weight per total oil weight of the seed
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Ontology Term
SOY:0001790 | Seed oil plus protein content
Description: The amount of total seed weight of a seed that is composed of oils and protein.
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Ontology Term
CO_336:0000049 | Seed oil content measurement in the lab
Description: Weigh the amount of extracted oil from seed after harvest and divide by the seed dry weight
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Data Set
mixed.gwas.Cao_Li_2017
URL: https://data.legumeinfo.org/Glycine/max/gwas/mixed.gwas.Cao_Li_2017/
Description: We used both a linkage and association mapping methodology to dissect the genetic basis of seed oil content of Chinese soybean cultivars in various environments in the Jiang-Huai River Valley. One recombinant inbred line (RIL) population (NJMN-RIL), with 104 lines developed from a cross between M8108 and NN1138-2, was planted in five environments to investigate phenotypic data, and a new genetic map with 2,062 specific-locus amplified fragment markers was constructed to map oil content QTLs. A derived F2 population between MN-5 (a line of NJMN-RIL) and NN1138-2 was also developed to confirm one major QTL. A soybean breeding germplasm population (279 lines) was established to perform a genome-wide association study (GWAS) using 59,845 high-quality single nucleotide polymorphism markers. In the NJMN-RIL population, 8 QTLs were found that explained a range of phenotypic variance from 6.3 to 26.3% in certain planting environments. Among them, qOil-5-1, qOil-10-1, and qOil-14-1 were detected in different environments, and qOil-5-1 was further confirmed using the secondary F2 population. Three loci located on chromosomes 5 and 20 were detected in a 2-year long GWAS, and one locus that overlapped with qOil-5-1 was found repeatedly and treated as the same locus. qOil-5-1 was further localized to a linkage disequilibrium block region of approximately 440 kb. These results will not only increase our understanding of the genetic control of seed oil content in soybean, but will also be helpful in marker-assisted selection for breeding high seed oil content soybean and gene cloning to elucidate the mechanisms of seed oil content.
Licence: ODC Public Domain Dedication and Licence (PDDL)
DataSource: LIS Datastore
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Trait
Trait
   
Name: Seed oil
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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Trait
Trait
   
Name: Seed oil
QTL Study: BSR101_x_LG82-8379.qtl.Kabelka_Diers_2004
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Trait
Trait
   
Name: Seed oil
QTL Study: Charleston_x_Dongnong.qtl.Qi_Wu_2011
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Trait
Trait
   
Name: Seed oil
QTL Study: DongNong46_x_KenJian23.qtl.Mao_Jiang_2013
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Trait
Trait
   
Name: Seed oil
QTL Study: Essex_x_Williams.qtl.Hyten_Pantalone_2004b
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Trait
Trait
   
Name: Seed oil
QTL Study: Hefeng25_x_MapleArrow.qtl.Li_Sun_2010
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Trait
Trait
   
Name: Seed oil
QTL Study: Jindou23_x_Huibuzhi.qtl.LIANG_YU_2010
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Trait
Trait
   
Name: Seed oil
QTL Study: KefengNo1_x_1138-2.qtl.Gai_Wang_2007
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Trait
Trait
   
Name: Seed oil
QTL Study: KefengNo1_x_Nannong1138-2.qtl.Zhang_Wang_2004
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Trait
Trait
   
Name: Seed oil
QTL Study: Keunolkong_x_Iksan10.qtl.Kim_Kim_2010
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Trait
Trait
   
Name: Seed oil
QTL Study: KF1_x_NN1138-2.qtl.Li_Zhao_2011
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Trait
Trait
   
Name: Seed oil
QTL Study: Lineage69_x_Tucunare.qtl.Leite_Pinheiro_2016
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Trait
Trait
   
Name: Seed oil
QTL Study: M82806_x_HHP.qtl.Brummer_Graef_1997
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Trait
Trait
   
Name: Seed oil
QTL Study: MaBelle_x_Proto.qtl.Csanádi_Vollmann_2001
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Trait
Trait
   
Name: Seed oil
QTL Study: MD96-5722_x_Spencer.qtl.Akond_Liu_2014
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Trait
Trait
   
Name: Seed oil
QTL Study: Minsoy_x_Archer.qtl.Orf_Chase_1999a
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Trait
Trait
   
Name: Seed oil
QTL Study: Minsoy_x_Noir1.qtl.Specht_Chase_2001
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Trait
Trait
   
Name: Seed oil
QTL Study: Misuzudaizu_x_MoshidouGong503.qtl.Tajuddin_Watanabe_2003
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Trait
Trait
   
Name: Seed oil
QTL Study: mixed.qtl.Pathan_Vuong_2013
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Trait
Trait
   
Name: Seed oil
QTL Study: mixed.qtl.Qi_Wu_2011
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Trait
Trait
   
Name: Seed oil
QTL Study: N87-984-16_x_TN93-99.qtl.Panthee_Pantalone_2005
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Trait
Trait
   
Name: Seed oil
QTL Study: Noir1_x_Minsoy.qtl.Mansur_Orf_1996
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Trait
Trait
   
Name: Seed oil
QTL Study: OACMillennium_x_Heinong38.qtl.Palomeque_Li-Jun_2009b
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Trait
Trait
   
Name: Seed oil
QTL Study: OACWallace_x_OACGlencoe.qtl.Eskandari_Cober_2013a
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Trait
Trait
   
Name: Seed oil
QTL Study: Parker_x_Gsoja.qtl.Sebolt_Shoemaker_2000
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Trait
Trait
   
Name: Seed oil
QTL Study: Peking_x_Essex.qtl.Qiu_Arelli_1999
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Trait
Trait
   
Name: Seed oil
QTL Study: PI468916_x_A81-356022.qtl.Nichols_Glover_2006
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Trait
Trait
   
Name: Seed oil
QTL Study: Pioneer9071_x_8902.qtl.Rossi_Orf_2013
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Trait
Trait
   
Name: Seed oil
QTL Study: RG10_x_OX948.qtl.Reinprecht_Poysa_2006
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Trait
Trait
   
Name: Seed oil
QTL Study: SD02-4-59_x_A02-381100.qtl.Wang_Jiang_2012
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Trait
Trait
   
Name: Seed oil
QTL Study: SD02-4-59_x_A02-381100.qtl.Wang_Jiang_2014
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Trait
Trait
   
Name: Seed oil
QTL Study: TK780_x_Hidaka4.qtl.Shibata_Takayama_2008
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Trait
Trait
   
Name: Seed oil
QTL Study: Young_x_PI416937.qtl.Fasoula_Harris_2004
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Trait
Trait
   
Name: Seed oil
QTL Study: Young_x_PI416937.qtl.Lee_Bailey_1996a
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Trait
Trait
   
Name: Seed oil
QTL Study: Zhongdou27_x_Jiunong20.qtl.Han_Teng_2015
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GWAS Result
GWAS Result
Marker: ss715637318
p-value: 3.72E-12
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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Trait
Trait
   
Name: Seed oil
GWAS: mixed.gwas.Bandillo_Jarquin_2015
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GWAS Result
GWAS Result
Marker: ss715637316
p-value: 1.02E-14
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715637321
p-value: 2.95E-13
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715621801
p-value: 3.02E-17
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715621799
p-value: 1.45E-14
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715637329
p-value: 6.03E-14
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715621816
p-value: 1.35E-11
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715591641
p-value: 3.16E-9
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715591644
p-value: 6.92E-7
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715591642
p-value: 3.16E-8
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715591647
p-value: 3.24E-8
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715591649
p-value: 1.12E-9
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715637283
p-value: 3.09E-6
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715637294
p-value: 4.07E-15
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715637299
p-value: 1.23E-16
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715621777
p-value: 1.48E-27
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715621779
p-value: 3.24E-7
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: ss715637315
p-value: 3.55E-12
GWAS: mixed.gwas.Bandillo_Jarquin_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: Gm05_38506373
p-value: 1.58489E-6
GWAS: mixed.gwas.Cao_Li_2017
Trait: Seed oil
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Trait
Trait
   
Name: Seed oil
GWAS: mixed.gwas.Cao_Li_2017
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GWAS Result
GWAS Result
Marker: Gm05_38473956
p-value: 1.58489E-7
GWAS: mixed.gwas.Cao_Li_2017
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: Gm20_31164168
p-value: 1.0E-8
GWAS: mixed.gwas.Cao_Li_2017
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: Gm20_606529
p-value: 2.51189E-6
GWAS: mixed.gwas.Cao_Li_2017
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs204699
p-value: 7.59E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs14297133
p-value: 7.24E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs32697665
p-value: 6.17E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs12023370
p-value: 7.94E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs35315668
p-value: 7.76E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs15774585
p-value: 3.31E-5
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs15783346
p-value: 5.37E-5
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs40944487
p-value: 7.08E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs35333667
p-value: 5.37E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs1452418
p-value: 9.12E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs55473106
p-value: 7.59E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: rs49097495
p-value: 6.17E-4
GWAS: mixed.gwas.Li_Zhao_2019
Trait: Seed oil
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Trait
Trait
   
Name: Seed oil
GWAS: mixed.gwas.Li_Zhao_2019
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GWAS Result
GWAS Result
Marker: FB1811225
p-value: 3.86E-7
GWAS: mixed.gwas.Sonah_ODonoughue_2015
Trait: Seed oil
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Trait
Trait
   
Name: Seed oil
GWAS: mixed.gwas.Sonah_ODonoughue_2015
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GWAS Result
GWAS Result
Marker: FB58684
p-value: 1.95E-6
GWAS: mixed.gwas.Sonah_ODonoughue_2015
Trait: Seed oil
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GWAS Result
GWAS Result
Marker: FB30728503
p-value: 1.18E-5
GWAS: mixed.gwas.Sonah_ODonoughue_2015
Trait: Seed oil
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Trait
Trait
   
Name: Seed oil
QTL Study: PI27890_x_PI290136.qtl.Mansur_Lark_1993
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GWAS
mixed.gwas.Cao_Li_2017
Synopsis: GWAS and QTL study of soybean seed oil, conducted on 279 lines from a Chinese breeding population, genotyped with 59,845 SNPs.
Genotyping Platform: Li_Guo_2016
Genotypes: 279 lines from a Chinese breeding population
Description: We used both a linkage and association mapping methodology to dissect the genetic basis of seed oil content of Chinese soybean cultivars in various environments in the Jiang-Huai River Valley. One recombinant inbred line (RIL) population (NJMN-RIL), with 104 lines developed from a cross between M8108 and NN1138-2, was planted in five environments to investigate phenotypic data, and a new genetic map with 2,062 specific-locus amplified fragment markers was constructed to map oil content QTLs. A derived F2 population between MN-5 (a line of NJMN-RIL) and NN1138-2 was also developed to confirm one major QTL. A soybean breeding germplasm population (279 lines) was established to perform a genome-wide association study (GWAS) using 59,845 high-quality single nucleotide polymorphism markers. In the NJMN-RIL population, 8 QTLs were found that explained a range of phenotypic variance from 6.3 to 26.3% in certain planting environments. Among them, qOil-5-1, qOil-10-1, and qOil-14-1 were detected in different environments, and qOil-5-1 was further confirmed using the secondary F2 population. Three loci located on chromosomes 5 and 20 were detected in a 2-year long GWAS, and one locus that overlapped with qOil-5-1 was found repeatedly and treated as the same locus. qOil-5-1 was further localized to a linkage disequilibrium block region of approximately 440 kb. These results will not only increase our understanding of the genetic control of seed oil content in soybean, but will also be helpful in marker-assisted selection for breeding high seed oil content soybean and gene cloning to elucidate the mechanisms of seed oil content.
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Data Set
OACWallace_x_OACGlencoe.qtl.Eskandari_Cober_2013a
URL: https://data.legumeinfo.org/Glycine/max/qtl/OACWallace_x_OACGlencoe.qtl.Eskandari_Cober_2013a/
Description: Further information provided in 10.1007/s00122-012-1995-3
Licence: ODC Public Domain Dedication and Licence (PDDL)
DataSource: LIS Datastore
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Publication
10.3389/fpls.2017.01222i
           
Title: Identification of Major Quantitative Trait Loci for Seed Oil Content in Soybeans by Combining Linkage and Genome-Wide Association Mapping
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QTL
A81356022_x_PI468916.qtl.Diers_Keim_1992:Seed_oil_2-1
Name: Seed oil 2-1
Trait: Seed oil
Genetic Map: GmRFLP-USDAARS-RCS
Linkage Group: GmRFLP-USDAARS-RCS:I
Start: 28.0
End: 30.4
Markers: K011_1
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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QTL
A81356022_x_PI468916.qtl.Diers_Keim_1992:Seed_oil_2-4
Name: Seed oil 2-4
Trait: Seed oil
Genetic Map: GmComposite1999
Linkage Group: GmComposite1999:E
Start: 38.1
End: 40.1
Markers: A454_1
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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QTL
A81356022_x_PI468916.qtl.Diers_Keim_1992:Seed_oil_2-5
Name: Seed oil 2-5
Trait: Seed oil
Genetic Map: GmComposite1999
Linkage Group: GmComposite1999:E
Start: 19.4
End: 21.4
Markers: SAC7_1
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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QTL
A81356022_x_PI468916.qtl.Diers_Keim_1992:Seed_oil_2-2
Name: Seed oil 2-2
Trait: Seed oil
Genetic Map: GmRFLP-USDAARS-RCS
Linkage Group: GmRFLP-USDAARS-RCS:I
Start: 30.4
End: 38.95
Markers: A407_1
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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QTL
A81356022_x_PI468916.qtl.Diers_Keim_1992:Seed_oil_2-3
Name: Seed oil 2-3
Trait: Seed oil
Genetic Map: GmComposite1999
Linkage Group: GmComposite1999:E
Start: 21.9
End: 23.9
Markers: Pb
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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QTL
A81356022_x_PI468916.qtl.Diers_Keim_1992:Seed_oil_2-8
Name: Seed oil 2-8
Trait: Seed oil
Genetic Map: GmComposite1999
Linkage Group: GmComposite1999:E
Start: 35.4
End: 37.4
Markers: K229_1
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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QTL
A81356022_x_PI468916.qtl.Diers_Keim_1992:Seed_oil_2-9
Name: Seed oil 2-9
Trait: Seed oil
Genetic Map: GmComposite1999
Linkage Group: GmComposite1999:E
Start: 40.9
End: 42.9
Markers: A203_1
QTL Study: A81356022_x_PI468916.qtl.Diers_Keim_1992
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USDA
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The Legume Information System (LIS) is a research project of the USDA-ARS:Corn Insects and Crop Genetics Research in Ames, IA.
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