Data Set : Wm82.gnm2.syn.HXNY

URL  https://data.legumeinfo.org/Glycine/max/synteny/Wm82.gnm2.syn.HXNY/
Description  Synteny calculations involves identification of orthologous genes by selecting reciprocal top hits between chromosome pairs from an all-against-all blastp search of genes between two species (evalue threshold of 1e-10), followed by DAGchainer to predict chains of syntenic genes in complete genomes. Proportions of synonymous-site changes (Ks) between orthologs are calculated, and synteny blocks are filtered for block-wise median Ks values. Synteny blocks have also been calculated to show these paralogous WGD-derived duplications.
Licence  ODC Public Domain Dedication and Licence (PDDL)
DataSource  LIS Datastore
Synopsis  Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.
Version  gnm2
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