LIS - Legume Information System
Information about legume traits for crop improvement
GlycineMine
v5.1.0.3
Glycine data from LIS
v5.1.0.3
Glycine data from LIS
| URL | https://data.legumeinfo.org/Glycine/max/markers/Wm82.gnm2.mrk.Han_Zhao_2015/ |
| Description | The Genomic DNA of the 440 accessions were partially sequenced using specific-locus amplified fragment sequen- cing (SLAF-seq) approach by Illumina Genome Analyzer II. The 347 million paired-end reads with 45 bp read length were mapped to the reference soybean genome (Wm82.a2.v1) and a mean of 57,418 high quality tags were identified from paired-end reads for each accession. A data set of 36,976 SNPs at Minor Allele Fre- quency (MAF)≥4 % was generated from 57,418 high quality tags. The rate of missing data was controlled at less than 10 % for each accession. The set of SNPs covered 20 chromosomes of soybean. The resulting SNP density of one SNP per 27 Kbp was available in the present study. |
| Licence | ODC Public Domain Dedication and Licence (PDDL) |
| DataSource | LIS Datastore |
| Synopsis | SNP markers generated Specific Locus Amplified Fragment Sequencing (SLAF-seq) approach, and showing association with resistance against two soybean cyst nematode types. |
| Version | gnm2 |
