LIS Datastore: species descriptions
Aeschynomene/evenia/about_this_collection
Aeschynomene evenia organism and strain information.
Arachis/duranensis/about_this_collection
Arachis duranensis organism and strain information.
Arachis/hypogaea/about_this_collection
Arachis hypogaea organism and strain information.
Arachis/ipaensis/about_this_collection
Arachis ipaensis organism and strain information.
Cajanus/cajan/about_this_collection
Cajanus cajan organism and strain information.
Chamaecrista/fasciculata/about_this_collection
Chamaecrista fasciculata organism and strain information.
Cicer/arietinum/about_this_collection
Cicer arietinum organism and strain information.
Glycine/D3-tomentella/about_this_collection
Glycine D3-tomentella organism and strain information.
Glycine/cyrtoloba/about_this_collection
Glycine cyrtoloba organism and strain information.
Glycine/dolichocarpa/about_this_collection
Glycine dolichocarpa organism and strain information.
Glycine/falcata/about_this_collection
Glycine falcata organism and strain information.
Glycine/max/about_this_collection
Glycine max organism and strain information.
Glycine/soja/about_this_collection
Glycine soja organism and strain information.
Glycine/stenophita/about_this_collection
Glycine stenophita organism and strain information.
Glycine/syndetika/about_this_collection
Glycine syndetika organism and strain information.
Lotus/japonicus/about_this_collection
Lotus japonicus organism and strain information.
Lupinus/albus/about_this_collection
Lupinus albus organism and strain information.
Lupinus/angustifolius/about_this_collection
Lupinus angustifolius organism and strain information.
Medicago/sativa/about_this_collection
Medicago sativa organism and strain information.
Medicago/truncatula/about_this_collection
Medicago truncatula organism and strain information.
Phaseolus/acutifolius/about_this_collection
Phaseolus acutifolius organism and strain information.
Phaseolus/lunatus/about_this_collection
Phaseolus lunatus organism and strain information.
Phaseolus/vulgaris/about_this_collection
Phaseolus vulgaris organism and strain information.
Pisum/sativum/about_this_collection
Pisum sativum organism and strain information.
Trifolium/pratense/about_this_collection
Trifolium pratense organism and strain information.
Vigna/angularis/about_this_collection
Vigna angularis organism and strain information.
Vigna/radiata/about_this_collection
Vigna radiata organism and strain information.
Vigna/unguiculata/about_this_collection
Vigna unguiculata organism and strain information.
LIS Datastore: genome assemblies
5-593.gnm1.1P7P
Phaseolus vulgaris accession 5-593 (Middle American race), genome assembly v1.
A17.gnm5.MVZ2
Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17
A17_HM341.gnm4.2GZ9
Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17 (HM341)
Amiga.gnm1.F4NR
genome assembly, including both nuclear pseudomolecules, unplaced contigs and organelle sequences
CB5-2.gnm1.WDTB
Vigna unguiculata genome assembly for CB5-2
CDCFrontier.gnm1.GkHc
Genome assembly of Cicer arietinum CDCFrontier (kabuli variety).
CDCFrontier.gnm2.S2FF
Cicer arietinum genotype CDCFrontier genome assembly v2.0
CIAT22838.gnm1.XF73
Aeschynomene evenia isolate CIAT22838, whole genome shotgun sequencing project.
Cameor.gnm1.P4FG
Pisum sativum accession Cameor genome assembly version 1a
Daliak.gnm2.VJZB
Cicer arietinum genotype Daliak genome assembly v2.0
F_IGA1003.gnm1.V9RB
Genome assembly files for Glycine soja F (F_IGA1003 in publication; WHFS_GsojaF_1.0 in the GenBank assembly record), Chu et al. (2021)
FiskebyIII.gnm1.F177
Glycine max genotype Fiskeby III genome assembly v1.0
Frijol_Bayo.gnm1.QH8L
Phaseolus acutifolius accession Frijol Bayo, genome assembly v1.
G1134.gnm1.PP7B
Genome assemblies for Glycine dolichocarpa, accession G1134, from Zhuang, Wang et al. (2021)
G1267.gnm1.YWW6
Genome assemblies for Glycine cyrtoloba, accession G1267, from Zhuang, Wang et al. (2021)
G1300.gnm1.C11H
Genome assemblies for Glycine syndetika, accession G1300, from Zhuang, Wang et al. (2021)
G1403.gnm1.CL6K
Genome assemblies for Glycine D3 tomentella, accession G1403, from Zhuang, Wang et al. (2021)
G1718.gnm1.B1PY
Genome assemblies for Glycine falcata, accession G1718, from Zhuang, Wang et al. (2021)
G1974.gnm1.7MZB
Genome assemblies for Glycine stenophita, accession G1974, from Zhuang, Wang et al. (2021)
G19833.gnm1.zBnF
Phaseolus vulgaris accession G19833 genome assembly v1.0
G19833.gnm2.fC0g
Phaseolus vulgaris accession G19833 genome assembly v2.1
G27455.gnm1.7NXX.yml
Phaseolus lunatus accession G27455 genome assembly V1
Gyeongwon.gnm3.JyYC
genome assembly
Hefeng25_IGA1002.gnm1.L69T
Genome assembly files for cultivar Hefeng 25 (Hefeng25_IGA1002 in publication; WHFS_GmHF25_1.0 in the GenBank assembly record), Chu et al. (2021)
Huaxia3_IGA1007.gnm1.RGGN
Genome assembly files for cultivar Huaxia3 (Huaxia3_IGA1007 in publication; WHFS_GmHX3_1.0 in the GenBank assembly record), Chu et al. (2021)
ICC4958.gnm2.bg5m
Genome assembly of Cicer arietinum ICC4958 (desi variety).
ICPL87119.gnm1.SBGP
Cajanus cajon accession ICPL87119 genome assembly, v1.0
ICPL87119.gnm2.KL9M
Cajanus cajan genotype ICPL87119 genome assembly v2.0
IT97K-499-35.gnm1.QnBW
Vigna unguiculata accession IT97K-499-35 genome assembly 1.0
Jinyuan_IGA1006.gnm1.LXM0
Genome assembly files for cultivar Jinyuan (Jinyuan_IGA100 in the publication; 6HFS_GmJY_1.0 in the GenBank assembly record), Chu et al. (2021)
K30076.gnm1.bXJ8
Genome assembly 1 for Arachis ipaensis, accession K30076.
LaborOvalle.gnm1.VZZS
Phaseolus vulgaris accession Labor Ovalle (race Guatemala) genome assembly v1.
Lee.gnm1.BXNC
Genome assembly
Lee.gnm2.K7BV
Glycine max genotype Lee genome assembly v2.0
MG20.gnm3.QPGB
Genome assembly of Lotus japonicus (MG20 variety)
MilvusB.gnm2.gNmT
Genome assembly for Trifolium pratense (Milvus B)
PI483463.gnm1.YJWS
Glycine soja accession PI 483463 genome assembly, v1.0
R108.gnmHiC_1.7RWS
An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.
Sanzi.gnm1.YNCM
Vigna unguiculata genome assembly for Sanzi
Shumari.gnm1.V0CS
Vigna angularis accession Shumari genome
Suvita2.gnm1.5QLL
Vigna unguiculata genome assembly for Suvita2
TZ30.gnm1.TX9W
Vigna unguiculata genome assembly for TZ30
Tanjil.gnm1.Qq0N
Genome assembly, including scaffold assemblies, pseudomolecule assemblies, and information for anchoring scaffolds into pseudomolecules for Lupinus angustifolius (Tanjil).
Tifrunner.gnm1.KYV3
Genome assembly 1 for Arachis hypogaea, cultivar Tifrunner
Tifrunner.gnm2.J5K5
Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.
UCR779.gnm1.M7KZ
Vigna unguiculata genome assembly for UCR779
UI111.gnm1.3VTM
Phaseolus vulgaris accession UI111 genome assembly v1
V14167.gnm1.SWBf
Genome assembly 1 for Arachis duranensis, accession V14167
VC1973A.gnm6.3nL8
Directory of scaffold assemblies and pseudomolecule assemblies.
W05.gnm1.SVL1
Genome assembly files for cultivar W05 from Xie, Lam et al. (2019): A reference-grade wild soybean genome
W6_15578.gnm2.L2V4
Phaseolus acutifolius accession W6_15578, genome assembly v2.
Wenfeng7_IGA1001.gnm1.L0QH
Genome assembly files for cultivar Wenfeng 7 (Wenfeng7_IGA1001 in publication; WHFS_GmWF7_1.0 in the GenBank assembly record); Chu et al. (2021)
Wm82.gnm1.FCtY
Glycine max accession Williams genome assembly v1.0
Wm82.gnm2.DTC4
Glycine max accession Williams 82 genome assembly v2.0
Wm82.gnm4.4PTR
Glycine max accession Williams 82 genome assembly v4.0
Wm82_IGA1008.gnm1.5CQQ
Genome assembly files for cultivar Williams 82 (Wm82_IGA1008 in publication; WHFS_GmW82_1.0 in the GenBank assembly record), Chu et al. (2021)
Xiabao_II.gnm1.WDBP
Vigna unguiculata genome assembly for Xiabao_II
XinJiangDaYe.gnm1.12MR
Pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe
ZN016.gnm1.997F
Vigna unguiculata genome assembly for ZN016
Zh13.gnm1.N6C8
Genome assembly files for cultivar Zhonghuang 13, Shen et al. (2018)
Zh13.gnm2.LV9P
Genome assembly version 2 files for cultivar Zhonghuang 13, Shen et al. (2019)
Zh13_IGA1005.gnm1.FRXQ
Genome assembly files for cultivar Zhonghuang 13 (Zh13_IGA1005 in publication; WHFS_GmZH13_1.0 in the GenBank assembly record), Chu et al. (2021)
Zh35_IGA1004.gnm1.DBYJ
Genome assembly files for cultivar Zhonghuang 35 (Zh35_IGA1004 in publication; WHFS_GmZH35_1.0 in the GenBank assembly record), Chu et al. (2021)
LIS Datastore: genome annotation
5-593.gnm1.ann1.3FBJ
Phaseolus vulgaris accession 5-593 (Middle American race), annotation 1, genome assembly v1.
A17.gnm5.ann1_6.L2RX
Genome annotation for Medicago truncatula (A17)
A17_HM341.gnm4.ann2.G3ZY
Genome annotation for Medicago truncatula (A17 HM341)
Amiga.gnm1.ann1.3GKS
Lupinus albus accession Amiga annotation files on genome assembly version 1
CB5-2.gnm1.ann1.0GKC
Genome annotation for Vigna unguiculata CB5-2
CDCFrontier.gnm1.ann1.nRhs
genome annotation of Cicer arietium (kabuli variety)
CDCFrontier.gnm2.ann1.9M1L
genome annotation of Cicer arietium (kabuli variety)
CIAT22838.gnm1.ann1.ZM3R
Aeschynomene evenia isolate CIAT22838, whole genome shotgun sequencing project.
Cameor.gnm1.ann1.7SZR
Pisum sativum accession Cameor annotation files on genome assembly version 1a
Daliak.gnm2.ann1.MFKF
genome annotation of Trifolium subterraneu (Daliak)
F_IGA1003.gnm1.ann1.G61B
Genome annotation files for cultivar F, Chu et al. (2021)
FiskebyIII.gnm1.ann1.SS25
Genome annotation files for Glycine max genotype Fiskeby III, Stupar et al. (2020)
Frijol_Bayo.gnm1.ann1.ML22
Genome annotation files for Phaseolus acutifolius accession Frijol Bayo; JGI annotation version 1 on assembly 1
G1134.gnm1.ann1.4BJM
Genome annotation files for Glycine tolichocarpa, accession G1134, from Zhuang, Wang et al. (2021)
G1267.gnm1.ann1.HRFD
Genome annotation files for Glycine cyrtoloba, accession G1267, from Zhuang, Wang et al. (2021)
G1300.gnm1.ann1.RRK6
Genome annotation files for Glycine syndetika, accession G1300, from Zhuang, Wang et al. (2021)
G1403.gnm1.ann1.XNZQ
Genome annotation files for Glycine D3 tomentella, accession G1403, from Zhuang, Wang et al. (2021)
G1718.gnm1.ann1.2KSV
Genome annotation files for Glycine falcata, accession G1718, from Zhuang, Wang et al. (2021)
G1974.gnm1.ann1.F257
Genome annotation files for Glycine stenphyta, accession G1974, from Zhuang, Wang et al. (2021)
G19833.gnm1.ann1.pScz
Phaseolus vulgaris accession G19833 annotation files
G19833.gnm2.ann1.PB8d
Phaseolus vulgaris accession G19833 annotation files from genome assembly 2.0
G27455.gnm1.ann1.JD7C
Phaseolus lunatus accession G27455 annotation files from genome assembly V1
Gyeongwon.gnm3.ann1.3Nz5
Directory of gene annotations, called on an assembly of pseudomolecules and remaining scaffold sequences
Hefeng25_IGA1002.gnm1.ann1.320V
Genome annotation files for cultivar Hefeng 25, Chu et al (2021)
Huaxia3_IGA1007.gnm1.ann1.LKC7
Genome annotation files for cultivar Huaxia3, Chu et al. (2021)
ICC4958.gnm2.ann1.LCVX
genome annotation of Cicer arietium (desi variety)
ICPL87119.gnm1.ann1.Y27M
Cajanus cajan accession ICPL87119 genome annotation, v1.0
ICPL87119.gnm2.ann1.L3ZH
genome annotation of Cajanus cajan (ICPL87119 genoome assembly 2)
IT97K-499-35.gnm1.ann2.FD7K
Genome annotation version 2 for Vigna unguiculata IT97K-499-35
Jinyuan_IGA1006.gnm1.ann1.2NNX
Genome annotation files for cultivar Jinyuan, Chu et al. (2021)
K30076.gnm1.ann1.J37m
genome annotations for Arachis ipaensis K30076.gnm1.ann1
LaborOvalle.gnm1.ann1.L1DY
Phaseolus vulgaris accession Labor Ovalle (race Guatemala), annotation 1, genome assembly v1.
Lee.gnm1.ann1.6NZV
Glycine max accession Lee genome annotation files; JGI annotation version 1 on assembly version 1
Lee.gnm2.ann1.1FNT
genome annotation of Glycine max Lee
MG20.gnm3.ann1.WF9B
Genome annotation of Lotus japonicus (MG20 variety)
MilvusB.gnm2.ann1.DFgp
Genome assembly for Trifolium pratense (Milvus B)
PI483463.gnm1.ann1.3Q3Q
Glycine soja accession PI483463 genome annotation files; JGI annotation version 1 on assembly 1
R108.gnmHiC_1.ann1.Y8NH
An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.
Sanzi.gnm1.ann1.HFH8
Genome annotation for Vigna unguiculata Sanzi
Shumari.gnm1.ann1.8BRS
Vigna angularis accession Shumari genome annotation files
Suvita2.gnm1.ann1.1PF6
Genome annotation for Vigna unguiculata Suvita2
TZ30.gnm1.ann2.59NL
Genome annotation for Vigna unguiculata TZ30
Tanjil.gnm1.ann1.nnV9
genome annotation files
Tifrunner.gnm1.ann1.CCJH
Arachis hypogaea accession Tifrunner annotation files from genome assembly 1.0
Tifrunner.gnm2.ann1.4K0L
Gene models for genome assembly 2 for Arachis hypogaea, cultivar Tifrunner.
UCR779.gnm1.ann1.VF6G
Genome annotation for Vigna unguiculata UCR779
UI111.gnm1.ann1.8L4N
Phaseolus vulgaris accession UI111 annotation files from genome assembly 1.0
V14167.gnm1.ann1.cxSM
genome annotations
VC1973A.gnm6.ann1.M1Qs
Gene annotations
W05.gnm1.ann1.T47J
Glycine soja accession W05 genome annotation files
W6_15578.gnm2.ann1.LVZ1
Phaseolus acutifolius accession W6_15578, annotations on genome assembly v2.
Wenfeng7_IGA1001.gnm1.ann1.ZK5W
Genome annotation files for cultivar Wenfeng 7, Chu et al. (2021)
Wm82.gnm1.ann1.DvBy
Glycine max accession Williams genome annotation files
Wm82.gnm2.ann1.RVB6
Glycine max accession Williams genome annotation files; JGI annotation version 1 on assembly 2
Wm82.gnm4.ann1.T8TQ
Glycine max accession Williams genome annotation files; JGI annotation version 1 on assembly 4
Wm82_IGA1008.gnm1.ann1.FGN6
Genome annotation files for cultivar William 82, Chu et al. (2021)
Xiabao_II.gnm1.ann1.4JFL
Genome annotation for Vigna unguiculata Xiabao_II
XinJiangDaYe.gnm1.ann1.RKB9
Gene annotations for pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe
ZN016.gnm1.ann2.C7YV
Genome annotation for Vigna unguiculata ZN016
Zh13.gnm1.ann1.8VV3
Genome annotation files for cultivar Zhonghuang 13, Shen et al. (2018)
Zh13.gnm2.ann1.FJ3G
Genome annotation files for cultivar Zhonghuang 13, Shen et al. (2019)
Zh13_IGA1005.gnm1.ann1.87Z5
Genome annotation files for cultivar Zhonghuang 13, Chu et al. (2021)
Zh35_IGA1004.gnm1.ann1.RGN6
Genome annotation files for cultivar Zhonghuang 35, Chu et al. (2021)
LIS Datastore: gene expression
A17_HM341.gnm4.ann2.expr.RLZY
Affymetrix GeneChip expression data from the Noble Medicago truncatula Gene Expression Atlas
G19833.gnm1.ann1.expr.4ZDQ
LIS expression dataset phavu1 (An RNA-Seq based gene expression atlas of the common bean cv. Negro jamapa).
ICC4958.gnm2.ann1.expr.4Y7B
Chickpea Transcriptome Atlas - I
ICPL87119.gnm1.ann1.expr.4H6Z
Cajanus cajan accession ICPL87119 gene expression atlas
IT97K-499-35.gnm1.ann1.expr.BWH5
Black-eyed pea gene expression atlas (IT97K-499-35)
Wm82.gnm2.ann1.expr.G7ZY
Soybean gene expression atlas from 14 conditions (Libault et al., 2010).
LIS Datastore: genetic studies
LIS Datastore: genetic maps
LIS Datastore: genetic markers
LIS Datastore: synteny
CDCFrontier.gnm1.syn.7Bqh
Synteny calculations between Cicer arietinum CDCFrontier (kabuli variety) and other species and accessions.
G19833.gnm1.syn.xQ7F
Synteny mappings among the genomes relative to Phaseolus vulgaris G19833 gnm1.ann1 genome annotation.
G19833.gnm2.syn.DVDW
Synteny mappings among the genomes relative to the Phaseolus vulgaris G19833 gnm2.ann1 genome annotation.
Gyeongwon.gnm3.syn.wCFF
Synteny between Vigna angularis Gyeongwon and other species accessions calculated by LIS.
ICC4958.gnm2.syn.PdvJ
Synteny calculations between Cicer arietinum ICC4958 (desi variety) and other species and accessions.
ICPL87119.gnm1.syn.Nkx0
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.
IT97K-499-35.gnm1.syn.W3NY
Synteny between Vigna unguiculata IT97K-499-35 and other species accessions calculated by LIS.
K30076.gnm1.syn.S8s4
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.
MG20.gnm3.syn.0ZB0
Synteny mappings among the genomes relative to Lotus japonicus accession MG20 assembly gnm3
MilvusB.gnm2.syn.dXVX
Synteny mappings among the genomes relative to Trifolium pratense accession MilvusB
Tanjil.gnm1.syn.TwnC
Synteny mappings between Lupinus angustifolius (Tanjil) and other genomes.
V14167.gnm1.syn.qmkW
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.
VC1973A.gnm6.syn.mcwy
Synteny between Vigna radiata VC1973A and other species accessions calculated by LIS.
Wm82.gnm2.syn.HXNY
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.
LIS Datastore: other
legume.genefam.fam1.M65K
null
legume.genefam.fam1.M65K.trees_ML_rooted
null
Gene Ontology
Gene Ontology
null
InterMine post-processor
InterMine gene-flanking regions
null
InterMine intergenic regions
null
InterPro
InterPro data set
null
InterPro domain GO annotations
null
Plant Ontology
Plant Ontology
null
Sequence Ontology
Sequence Ontology
null
USDA
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