Approximately 5 million SNP markers reported by Wu, Wang et al. 2020, identified from whole genome resequencing (WGRS) of 683 common bean genotypes, relative to the Phaseolus vulgaris assembly G19833.gnm1.
A common bean genomic library was constructed using the ‘IAC-UNA’ variety enriched for (CT) and (GT) for microsatellite motifs. From 1,209 sequenced clones, 714 showed microsatellites distributed over 471 simple and 243 compound motifs.
A 768-marker Illumina GoldenGate array of SNP markers based on Trans-legume Orthologous Group (TOG) genes; marker physical coordinates relative to G19833.gnm1
A total of 150 microsatellite markers developed for common bean (Phaseolus vulgaris L.) were tested for parental polymorphism and used to determine the positions of 100 genetic loci on an integrated genetic map of the species.
Three cDNA libraries generated by the Bean EST project were analyzed for the presence of SSRs. A total of 219 expressed sequence tags (ESTs) were found to carry 240 SSRs (named EST-SSR), whereas 714 genomic sequences contained 471 SSRs (named genomic-SSR).
Around 15,000 common bean sequences (primarily EST contigs and EST singletons) were electronically positioned onto the common bean map using the shared syntentic blocks as references points.
A set of 79 previously mapped bean (Phaseolus vulgaris) genomic (Bng) clones were partially sequenced. Sequence tagged site (STSs) were produced for 16 of the clones, 2 of which contain simple sequence repeats (SSRs).
GWAS assessing soybean cyst nematode (SCN) (Heterodera glycines) resistance, seed coat color, and seed weight in 363 diverse accessions of common bean, P. vulgaris relative to the G19833 assembly 1.0
Marker SNPs developed via Genotyping by Sequencing (GBS) of the Andean Diversity Panel; reads were mapped to the Phaseolus vulgaris G19833 v2.1 reference assembly.
A 768-marker Illumina GoldenGate array of SNP markers based on Trans-legume Orthologous Group (TOG) genes; marker physical coordinates relative to G19833.gnm2
A set of 52,201 SNPs reported by Escobar, Oladzad et al. (2022) based on genotyping-by-sequencing (GBS) of a multiparent advanced generation inter-cross (MAGIC) dry bean population of 1,050 F5:7 RILs. Reads were mapped and sorted against the G19833.gnm2 reference assembly for common bean.
Genetic variability and GWAS of flavor, texture, and cooking quality attributes for Common beans of 20 Andean seed types, relative to the G19833 assembly v2.1.
GWAS assessing soybean cyst nematode (SCN) (Heterodera glycines) resistance, seed coat color, and seed weight in 363 diverse accessions of common bean, P. vulgaris relative to the G19833 assembly 1.0
Gene-based markers were used for mapping a RIL population of P. vulgaris. Over 1,800 SNPs and indels were found, 300 of which were screened in the RIL population. The resulting LOD 2.0 map is 1,545 cM in length and consists of 275 gene-based and previously mapped core markers.
Agronomic performance traits were studied in a population of BC2F(3:5) introgression lines created from the cross of a Colombian large red-seeded commercial cultivar, ICA Cerinza, and a wild common bean accession, G24404.
A mapping population of 267 F2 plants from the cross of common bean varieties Stampede and Red Hawk developed by Dr. Phil McClean at North Dakota State University.
This common bean consensus map was created using the DB (DOR364_x_BAT477, Mesoamerican intra-gene pool cross), DG (DOR364_x_G19833, inter-gene pool cross), and BJ (BAT93_x_JALOEEP558, inter-gene pool cross) mapping populations.
Agronomic performance traits were studied in a population of BC2F(3:5) introgression lines created from the cross of a Colombian large red-seeded commercial cultivar, ICA Cerinza, and a wild common bean accession, G24404.
Pangene set for Phaseolus species, based primarily on P. vulgaris but also including P. acutifolius and P. lunatus. This pangene set includes 8 annotation sets.
